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ORCIDBibTeX records: Burkhard Rost
@article{DBLP:journals/bioinformatics/NallapareddyBSHLWSRO23,
author = {Vamsi Nallapareddy and
Nicola Bordin and
Ian Sillitoe and
Michael Heinzinger and
Maria Littmann and
Vaishali P. Waman and
Neeladri Sen and
Burkhard Rost and
Christine A. Orengo},
title = {CATHe: detection of remote homologues for {CATH} superfamilies using
embeddings from protein language models},
journal = {Bioinform.},
volume = {39},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad029},
doi = {10.1093/BIOINFORMATICS/BTAD029},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NallapareddyBSHLWSRO23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ConteBMCMHGEPSTSTLMWRILHKBMCFLCGXWM23,
author = {Alessio Del Conte and
Adel Bouhraoua and
Mahta Mehdiabadi and
Damiano Clementel and
Alexander Miguel Monzon and
Alex S. Holehouse and
Daniel A. Griffith and
Ryan J. Emenecker and
Ashwini Patil and
Ronesh Sharma and
Tatsuhiko Tsunoda and
Alok Sharma and
Yi Jun Tang and
Bin Liu and
Claudio Mirabello and
Bj{\"{o}}rn Wallner and
Burkhard Rost and
Dagmar Ilzh{\"{o}}fer and
Maria Littmann and
Michael Heinzinger and
Lea I M. Krautheimer and
Michael Bernhofer and
Liam J. McGuffin and
Isabelle Callebaut and
Tristan Bitard Feildel and
Jian Liu and
Jianlin Cheng and
Zhiye Guo and
Jinbo Xu and
Sheng Wang and
Nawar Malhis and
J{\"{o}}rg Gsponer and
Chol{-}Song Kim and
Kun{-}Sop Han and
Myong{-}Chol Ma and
Lukasz A. Kurgan and
Sina Ghadermarzi and
Akila Katuwawala and
Bi Zhao and
Zhenling Peng and
Zhonghua Wu and
Gang Hu and
Kui Wang and
Md. Tamjidul Hoque and
Md Wasi Ul Kabir and
Michele Vendruscolo and
Pietro Sormanni and
Min Li and
Fuhao Zhang and
Pengzhen Jia and
Yida Wang and
Michail Yu. Lobanov and
Oxana V. Galzitskaya and
Wim F. Vranken and
Adri{\'{a}}n D{\'{\i}}az and
Thomas Litfin and
Yaoqi Zhou and
Jack Hanson and
Kuldip K. Paliwal and
Zsuzsanna Doszt{\'{a}}nyi and
G{\'{a}}bor Erd{\"{o}}s and
Silvio C. E. Tosatto and
Damiano Piovesan},
title = {{CAID} prediction portal: a comprehensive service for predicting intrinsic
disorder and binding regions in proteins},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{W1}},
pages = {62--69},
year = {2023},
url = {https://doi.org/10.1093/nar/gkad430},
doi = {10.1093/NAR/GKAD430},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ConteBMCMHGEPSTSTLMWRILHKBMCFLCGXWM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2301-06568,
author = {Ahmed Elnaggar and
Hazem Essam and
Wafaa Salah{-}Eldin and
Walid Moustafa and
Mohamed Elkerdawy and
Charlotte Rochereau and
Burkhard Rost},
title = {Ankh: Optimized Protein Language Model Unlocks General-Purpose Modelling},
journal = {CoRR},
volume = {abs/2301.06568},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2301.06568},
doi = {10.48550/ARXIV.2301.06568},
eprinttype = {arXiv},
eprint = {2301.06568},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2301-06568.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BernhoferR22,
author = {Michael Bernhofer and
Burkhard Rost},
title = {TMbed: transmembrane proteins predicted through language model embeddings},
journal = {{BMC} Bioinform.},
volume = {23},
number = {1},
pages = {326},
year = {2022},
url = {https://doi.org/10.1186/s12859-022-04873-x},
doi = {10.1186/S12859-022-04873-X},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BernhoferR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/IlzhoferHR22,
author = {Dagmar Ilzh{\"{o}}fer and
Michael Heinzinger and
Burkhard Rost},
title = {{SETH} predicts nuances of residue disorder from protein embeddings},
journal = {Frontiers Bioinform.},
volume = {2},
year = {2022},
url = {https://doi.org/10.3389/fbinf.2022.1019597},
doi = {10.3389/FBINF.2022.1019597},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fbinf/IlzhoferHR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/SchutzeHSR22,
author = {Konstantin Sch{\"{u}}tze and
Michael Heinzinger and
Martin Steinegger and
Burkhard Rost},
title = {Nearest neighbor search on embeddings rapidly identifies distant protein
relations},
journal = {Frontiers Bioinform.},
volume = {2},
year = {2022},
url = {https://doi.org/10.3389/fbinf.2022.1033775},
doi = {10.3389/FBINF.2022.1033775},
timestamp = {Fri, 28 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fbinf/SchutzeHSR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LautenbacherSMG22,
author = {Ludwig Lautenbacher and
Patroklos Samaras and
Julian Muller and
Andreas Grafberger and
Marwin Shraideh and
Johannes Rank and
Simon T. Fuchs and
Tobias K. Schmidt and
Matthew The and
Christian Dallago and
Holger Wittges and
Burkhard Rost and
Helmut Krcmar and
Bernhard K{\"{u}}ster and
Mathias Wilhelm},
title = {ProteomicsDB: toward a {FAIR} open-source resource for life-science
research},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {1541},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1026},
doi = {10.1093/NAR/GKAB1026},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LautenbacherSMG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pami/ElnaggarHDRWJGF22,
author = {Ahmed Elnaggar and
Michael Heinzinger and
Christian Dallago and
Ghalia Rehawi and
Yu Wang and
Llion Jones and
Tom Gibbs and
Tamas Feher and
Christoph Angerer and
Martin Steinegger and
Debsindhu Bhowmik and
Burkhard Rost},
title = {ProtTrans: Toward Understanding the Language of Life Through Self-Supervised
Learning},
journal = {{IEEE} Trans. Pattern Anal. Mach. Intell.},
volume = {44},
number = {10},
pages = {7112--7127},
year = {2022},
url = {https://doi.org/10.1109/TPAMI.2021.3095381},
doi = {10.1109/TPAMI.2021.3095381},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pami/ElnaggarHDRWJGF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/FoleyMRBSLZEBNTKBGSCGRHSGB22,
author = {Gabriel Foley and
Ariane Mora and
Connie M. Ross and
Scott Bottoms and
Leander S{\"{u}}tzl and
Marnie L. Lamprecht and
Julian Zaugg and
Alexandra Essebier and
Brad Balderson and
Rhys Newell and
Raine E. S. Thomson and
Bostjan Kobe and
Ross T. Barnard and
Luke Guddat and
Gerhard Schenk and
J{\"{o}}rg Carsten and
Yosephine Gumulya and
Burkhard Rost and
Dietmar Haltrich and
Volker Sieber and
Elizabeth M. J. Gillam and
Mikael Bod{\'{e}}n},
title = {Engineering indel and substitution variants of diverse and ancient
enzymes using Graphical Representation of Ancestral Sequence Predictions
{(GRASP)}},
journal = {PLoS Comput. Biol.},
volume = {18},
number = {10},
pages = {1010633},
year = {2022},
url = {https://doi.org/10.1371/journal.pcbi.1010633},
doi = {10.1371/JOURNAL.PCBI.1010633},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/FoleyMRBSLZEBNTKBGSCGRHSGB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZauchaHKKSPRGZF21,
author = {Jan Zaucha and
Michael Heinzinger and
A. Kulandaisamy and
Evans Kataka and
{\'{O}}scar Llorian Salv{\'{a}}dor and
Petr Popov and
Burkhard Rost and
M. Michael Gromiha and
Boris S. Zhorov and
Dmitrij Frishman},
title = {Mutations in transmembrane proteins: diseases, evolutionary insights,
prediction and comparison with globular proteins},
journal = {Briefings Bioinform.},
volume = {22},
number = {3},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa132},
doi = {10.1093/BIB/BBAA132},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZauchaHKKSPRGZF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LittmannBHSDOR21,
author = {Maria Littmann and
Nicola Bordin and
Michael Heinzinger and
Konstantin Sch{\"{u}}tze and
Christian Dallago and
Christine A. Orengo and
Burkhard Rost},
title = {Clustering FunFams using sequence embeddings improves {EC} purity},
journal = {Bioinform.},
volume = {37},
number = {20},
pages = {3449--3455},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab371},
doi = {10.1093/BIOINFORMATICS/BTAB371},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LittmannBHSDOR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BernhoferDKSHLO21,
author = {Michael Bernhofer and
Christian Dallago and
Timothy Karl and
Venkata P. Satagopam and
Michael Heinzinger and
Maria Littmann and
Tobias Olenyi and
Jiajun Qiu and
Konstantin Sch{\"{u}}tze and
Guy Yachdav and
Haim Ashkenazy and
Nir Ben{-}Tal and
Yana Bromberg and
Tatyana Goldberg and
L{\'{a}}szl{\'{o}} Kaj{\'{a}}n and
Se{\'{a}}n I. O'Donoghue and
Chris Sander and
Andrea Schafferhans and
Avner Schlessinger and
Gerrit Vriend and
Milot Mirdita and
Piotr Gawron and
Wei Gu and
Yohan Jarosz and
Christophe Trefois and
Martin Steinegger and
Reinhard Schneider and
Burkhard Rost},
title = {PredictProtein - Predicting Protein Structure and Function for 29
Years},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Webserver-Issue},
pages = {535--540},
year = {2021},
url = {https://doi.org/10.1093/nar/gkab354},
doi = {10.1093/NAR/GKAB354},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BernhoferDKSHLO21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2104-02443,
author = {Ahmed Elnaggar and
Wei Ding and
Llion Jones and
Tom Gibbs and
Tamas Feher and
Christoph Angerer and
Silvia Severini and
Florian Matthes and
Burkhard Rost},
title = {CodeTrans: Towards Cracking the Language of Silicone's Code Through
Self-Supervised Deep Learning and High Performance Computing},
journal = {CoRR},
volume = {abs/2104.02443},
year = {2021},
url = {https://arxiv.org/abs/2104.02443},
eprinttype = {arXiv},
eprint = {2104.02443},
timestamp = {Tue, 13 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2104-02443.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ReebWR20,
author = {Jonas Reeb and
Theresa Wirth and
Burkhard Rost},
title = {Variant effect predictions capture some aspects of deep mutational
scanning experiments},
journal = {{BMC} Bioinform.},
volume = {21},
number = {1},
pages = {107},
year = {2020},
url = {https://doi.org/10.1186/s12859-020-3439-4},
doi = {10.1186/S12859-020-3439-4},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ReebWR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/QiuNR20,
author = {Jiajun Qiu and
Dmitrii Nechaev and
Burkhard Rost},
title = {Protein-protein and protein-nucleic acid binding residues important
for common and rare sequence variants in human},
journal = {{BMC} Bioinform.},
volume = {21},
number = {1},
pages = {452},
year = {2020},
url = {https://doi.org/10.1186/s12859-020-03759-0},
doi = {10.1186/S12859-020-03759-0},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/QiuNR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/natmi/LittmannSCFHKMQ20,
author = {Maria Littmann and
Katharina Selig and
Liel Cohen{-}Lavi and
Yotam Frank and
Peter H{\"{o}}nigschmid and
Evans Kataka and
Anja M{\"{o}}sch and
Kun Qian and
Avihai Ron and
Sebastian Schmid and
Adam Sorbie and
Liran Szlak and
Ayana Dagan{-}Wiener and
Nir Ben{-}Tal and
Masha Y. Niv and
Daniel Razansky and
Bj{\"{o}}rn W. Schuller and
Donna P. Ankerst and
Tomer Hertz and
Burkhard Rost},
title = {Validity of machine learning in biology and medicine increased through
collaborations across fields of expertise},
journal = {Nat. Mach. Intell.},
volume = {2},
number = {1},
pages = {18--24},
year = {2020},
url = {https://doi.org/10.1038/s42256-019-0139-8},
doi = {10.1038/S42256-019-0139-8},
timestamp = {Mon, 04 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/natmi/LittmannSCFHKMQ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2007-06225,
author = {Ahmed Elnaggar and
Michael Heinzinger and
Christian Dallago and
Ghalia Rehawi and
Yu Wang and
Llion Jones and
Tom Gibbs and
Tamas Feher and
Christoph Angerer and
Martin Steinegger and
Debsindhu Bhowmik and
Burkhard Rost},
title = {ProtTrans: Towards Cracking the Language of Life's Code Through Self-Supervised
Deep Learning and High Performance Computing},
journal = {CoRR},
volume = {abs/2007.06225},
year = {2020},
url = {https://arxiv.org/abs/2007.06225},
eprinttype = {arXiv},
eprint = {2007.06225},
timestamp = {Wed, 28 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2007-06225.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LittmannGSBR19,
author = {Maria Littmann and
Tatyana Goldberg and
Sebastian Seitz and
Mikael Bod{\'{e}}n and
Burkhard Rost},
title = {Detailed prediction of protein sub-nuclear localization},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {205:1--205:15},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2790-9},
doi = {10.1186/S12859-019-2790-9},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LittmannGSBR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ScheibenreifLOR19,
author = {Linus Scheibenreif and
Maria Littmann and
Christine A. Orengo and
Burkhard Rost},
title = {FunFam protein families improve residue level molecular function prediction},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {400:1--400:9},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2988-x},
doi = {10.1186/S12859-019-2988-X},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ScheibenreifLOR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeinzingerEWDNM19,
author = {Michael Heinzinger and
Ahmed Elnaggar and
Yu Wang and
Christian Dallago and
Dmitrii Nechaev and
Florian Matthes and
Burkhard Rost},
title = {Modeling aspects of the language of life through transfer-learning
protein sequences},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {723},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-3220-8},
doi = {10.1186/S12859-019-3220-8},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeinzingerEWDNM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LittmannGSBR19a,
author = {Maria Littmann and
Tatyana Goldberg and
Sebastian Seitz and
Mikael Bod{\'{e}}n and
Burkhard Rost},
title = {Correction to: Detailed prediction of protein sub-nuclear localization},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {727},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-3305-4},
doi = {10.1186/S12859-019-3305-4},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LittmannGSBR19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/ReebR19,
author = {Jonas Reeb and
Burkhard Rost},
editor = {Shoba Ranganathan and
Michael Gribskov and
Kenta Nakai and
Christian Sch{\"{o}}nbach},
title = {Secondary Structure Prediction},
booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume
2},
pages = {488--496},
publisher = {Elsevier},
year = {2019},
url = {https://doi.org/10.1016/b978-0-12-809633-8.20267-7},
doi = {10.1016/B978-0-12-809633-8.20267-7},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/bioinf/ReebR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MahlichSRB18,
author = {Yannick Mahlich and
Martin Steinegger and
Burkhard Rost and
Yana Bromberg},
title = {{HFSP:} high speed homology-driven function annotation of proteins},
journal = {Bioinform.},
volume = {34},
number = {13},
pages = {i304--i312},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty262},
doi = {10.1093/BIOINFORMATICS/BTY262},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MahlichSRB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Marot-Lassauzaie18,
author = {Val{\'{e}}rie Marot{-}Lassauzaie and
Michael Bernhofer and
Burkhard Rost},
title = {Correcting mistakes in predicting distributions},
journal = {Bioinform.},
volume = {34},
number = {19},
pages = {3385--3386},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty346},
doi = {10.1093/BIOINFORMATICS/BTY346},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Marot-Lassauzaie18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CejuelaVGSBBUOR18,
author = {Juan Miguel Cejuela and
Shrikant Vinchurkar and
Tatyana Goldberg and
Madhukar Sollepura Prabhu Shankar and
Ashish Baghudana and
Aleksandar Bojchevski and
Carsten Uhlig and
Andr{\'{e}} Ofner and
Pandu Raharja{-}Liu and
Lars Juhl Jensen and
Burkhard Rost},
title = {LocText: relation extraction of protein localizations to assist database
curation},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {15:1--15:11},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2021-9},
doi = {10.1186/S12859-018-2021-9},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CejuelaVGSBBUOR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BernhoferGWAZBR18,
author = {Michael Bernhofer and
Tatyana Goldberg and
Silvana Wolf and
Mohamed Ahmed and
Julian Zaugg and
Mikael Bod{\'{e}}n and
Burkhard Rost},
title = {NLSdb - major update for database of nuclear localization signals
and nuclear export signals},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D503--D508},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx1021},
doi = {10.1093/NAR/GKX1021},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BernhoferGWAZBR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CejuelaBUBKMBDS17,
author = {Juan Miguel Cejuela and
Aleksandar Bojchevski and
Carsten Uhlig and
Rustem Bekmukhametov and
Sanjeev Kumar Karn and
Shpend Mahmuti and
Ashish Baghudana and
Ankit Dubey and
Venkata P. Satagopam and
Burkhard Rost},
title = {nala: text mining natural language mutation mentions},
journal = {Bioinform.},
volume = {33},
number = {12},
pages = {1852--1858},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx083},
doi = {10.1093/BIOINFORMATICS/BTX083},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/CejuelaBUBKMBDS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/insk/GagneurFHZR17,
author = {Julien Gagneur and
Caroline C. Friedel and
Volker Heun and
Ralf Zimmer and
Burkhard Rost},
title = {Bioinformatics advances biology and medicine by turning big data troves
into knowledge},
journal = {Inform. Spektrum},
volume = {40},
number = {2},
pages = {153--160},
year = {2017},
url = {https://doi.org/10.1007/s00287-017-1032-7},
doi = {10.1007/S00287-017-1032-7},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/insk/GagneurFHZR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/17/GagneurFHZR17,
author = {Julien Gagneur and
Caroline C. Friedel and
Volker Heun and
Ralf Zimmer and
Burkhard Rost},
editor = {Arndt Bode and
Manfred Broy and
Hans{-}Joachim Bungartz and
Florian Matthes},
title = {Bioinformatics Advances Biology and Medicine by Turning Big Data Troves
into Knowledge},
booktitle = {50 Jahre Universit{\"{a}}ts-Informatik in M{\"{u}}nchen},
pages = {33--45},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-662-54712-0\_3},
doi = {10.1007/978-3-662-54712-0\_3},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/books/sp/17/GagneurFHZR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YachdavWRSSPLRG16,
author = {Guy Yachdav and
Sebastian Wilzbach and
Benedikt Rauscher and
Robert Sheridan and
Ian Sillitoe and
James B. Procter and
Suzanna E. Lewis and
Burkhard Rost and
Tatyana Goldberg},
title = {MSAViewer: interactive JavaScript visualization of multiple sequence
alignments},
journal = {Bioinform.},
volume = {32},
number = {22},
pages = {3501--3503},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw474},
doi = {10.1093/BIOINFORMATICS/BTW474},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YachdavWRSSPLRG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/IsonRMKRCABBBBB16,
author = {Jon C. Ison and
Kristoffer Rapacki and
Herv{\'{e}} M{\'{e}}nager and
Mat{\'{u}}s Kalas and
Emil Rydza and
Piotr Chmura and
Christian Anthon and
Niall Beard and
Karel Berka and
Dan M. Bolser and
Tim Booth and
Anthony Bretaudeau and
Jan Brezovsky and
Rita Casadio and
Gianni Cesareni and
Frederik Coppens and
Michael Cornell and
Gianmauro Cuccuru and
Kristian Davidsen and
Gianluca Della Vedova and
Tunca Dogan and
Olivia Doppelt{-}Azeroual and
Laura Emery and
Elisabeth Gasteiger and
Thomas Gatter and
Tatyana Goldberg and
Marie Grosjean and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Manuela Helmer{-}Citterich and
Hans Ienasescu and
Vassilios Ioannidis and
Martin Closter Jespersen and
Rafael C. Jim{\'{e}}nez and
Nick S. Juty and
Peter Juvan and
Maximilian Koch and
Camille Laibe and
Jing{-}Woei Li and
Luana Licata and
Fabien Mareuil and
Ivan Micetic and
Rune M{\o}llegaard Friborg and
S{\'{e}}bastien Moretti and
Chris Morris and
Steffen M{\"{o}}ller and
Aleksandra Nenadic and
Hedi Peterson and
Giuseppe Profiti and
Peter M. Rice and
Paolo Romano and
Paola Roncaglia and
Rabie Saidi and
Andrea Schafferhans and
Veit Schw{\"{a}}mmle and
Callum Smith and
Maria Maddalena Sperotto and
Heinz Stockinger and
Radka Svobodov{\'{a}} Varekov{\'{a}} and
Silvio C. E. Tosatto and
Victor de la Torre and
Paolo Uva and
Allegra Via and
Guy Yachdav and
Federico Zambelli and
Gert Vriend and
Burkhard Rost and
Helen E. Parkinson and
Peter L{\o}ngreen and
S{\o}ren Brunak},
title = {Tools and data services registry: a community effort to document bioinformatics
resources},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {38--47},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1116},
doi = {10.1093/NAR/GKV1116},
timestamp = {Thu, 25 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/IsonRMKRCABBBBB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ReebHMBR16,
author = {Jonas Reeb and
Maximilian Hecht and
Yannick Mahlich and
Yana Bromberg and
Burkhard Rost},
title = {Predicted Molecular Effects of Sequence Variants Link to System Level
of Disease},
journal = {PLoS Comput. Biol.},
volume = {12},
number = {8},
year = {2016},
url = {https://doi.org/10.1371/journal.pcbi.1005047},
doi = {10.1371/JOURNAL.PCBI.1005047},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/ReebHMBR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KarpBKLLSHR15,
author = {Peter D. Karp and
Bonnie Berger and
Diane E. Kovats and
Thomas Lengauer and
Michal Linial and
Pardis Sabeti and
Winston Hide and
Burkhard Rost},
title = {Message from the {ISCB:} {ISCB} Ebola award for important future research
on the computational biology of Ebola virus},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {616--617},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv019},
doi = {10.1093/BIOINFORMATICS/BTV019},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KarpBKLLSHR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HampR15,
author = {Tobias Hamp and
Burkhard Rost},
title = {More challenges for machine-learning protein interactions},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1521--1525},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu857},
doi = {10.1093/BIOINFORMATICS/BTU857},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HampR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HampR15a,
author = {Tobias Hamp and
Burkhard Rost},
title = {Evolutionary profiles improve protein-protein interaction prediction
from sequence},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {1945--1950},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv077},
doi = {10.1093/BIOINFORMATICS/BTV077},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HampR15a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KarpBKLLSHR15,
author = {Peter D. Karp and
Bonnie Berger and
Diane E. Kovats and
Thomas Lengauer and
Michal Linial and
Pardis Sabeti and
Winston Hide and
Burkhard Rost},
title = {{ISCB} Ebola Award for Important Future Research on the Computational
Biology of Ebola Virus},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {1},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1004087},
doi = {10.1371/JOURNAL.PCBI.1004087},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/KarpBKLLSHR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/CejuelaMPMSMRC14,
author = {Juan Miguel Cejuela and
Peter McQuilton and
Laura Ponting and
Steven J. Marygold and
Raymund Stefancsik and
Gillian H. Millburn and
Burkhard Rost},
title = {tagtog: interactive and text-mining-assisted annotation of gene mentions
in {PLOS} full-text articles},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau033},
doi = {10.1093/DATABASE/BAU033},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/CejuelaMPMSMRC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rost14,
author = {Burkhard Rost},
title = {{ISCB:} past-present perspective for the International Society for
Computational Biology},
journal = {Bioinform.},
volume = {30},
number = {1},
pages = {143--145},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btt669},
doi = {10.1093/BIOINFORMATICS/BTT669},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rost14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KajanHKMR14,
author = {L{\'{a}}szl{\'{o}} Kaj{\'{a}}n and
Thomas A. Hopf and
Mat{\'{u}} Kala and
Debora S. Marks and
Burkhard Rost},
title = {FreeContact: fast and free software for protein contact prediction
from residue co-evolution},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {85},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-85},
doi = {10.1186/1471-2105-15-85},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KajanHKMR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YachdavKKHGHHSRBRAPSB0VSBR14,
author = {Guy Yachdav and
Edda Kloppmann and
L{\'{a}}szl{\'{o}} Kaj{\'{a}}n and
Maximilian Hecht and
Tatyana Goldberg and
Tobias Hamp and
Peter H{\"{o}}nigschmid and
Andrea Schafferhans and
Manfred Roos and
Michael Bernhofer and
Lothar Richter and
Haim Ashkenazy and
Marco Punta and
Avner Schlessinger and
Yana Bromberg and
Reinhard Schneider and
Gerrit Vriend and
Chris Sander and
Nir Ben{-}Tal and
Burkhard Rost},
title = {PredictProtein - an open resource for online prediction of protein
structural and functional features},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Webserver-Issue},
pages = {337--343},
year = {2014},
url = {https://doi.org/10.1093/nar/gku366},
doi = {10.1093/NAR/GKU366},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/YachdavKKHGHHSRBRAPSB0VSBR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GoldbergHHKYAAAABBBCDGGJHHHKKMNNPRSTVWZNR14,
author = {Tatyana Goldberg and
Maximilian Hecht and
Tobias Hamp and
Timothy Karl and
Guy Yachdav and
Nadeem Ahmed and
Uwe Altermann and
Philipp Angerer and
Sonja Ansorge and
Kinga Balasz and
Michael Bernhofer and
Alexander Betz and
Laura Cizmadija and
Kieu Trinh Do and
Julia Gerke and
Robert Greil and
Vadim Joerdens and
Maximilian Hastreiter and
Katharina Hembach and
Max Herzog and
Maria Kalemanov and
Michael Kluge and
Alice Meier and
Hassan Nasir and
Ulrich Neumaier and
Verena Prade and
Jonas Reeb and
Aleksandr Sorokoumov and
Ilira Troshani and
Susann Vorberg and
Sonja Waldraff and
Jonas Zierer and
Henrik Nielsen and
Burkhard Rost},
title = {LocTree3 prediction of localization},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Webserver-Issue},
pages = {350--355},
year = {2014},
url = {https://doi.org/10.1093/nar/gku396},
doi = {10.1093/NAR/GKU396},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GoldbergHHKYAAAABBBCDGGJHHHKKMNNPRSTVWZNR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/YachdavHPYR14,
author = {Guy Yachdav and
Maximilian Hecht and
Metsada Pasmanik{-}Chor and
Adva Yeheskel and
Burkhard Rost},
title = {\emph{HeatMapViewer}: interactive display of 2D data in biology},
journal = {F1000Research},
volume = {3},
pages = {48},
year = {2014},
url = {https://doi.org/10.12688/f1000research.3-48.v1},
doi = {10.12688/F1000RESEARCH.3-48.V1},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/YachdavHPYR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Rost13,
author = {Burkhard Rost},
title = {{ISCB:} past-present perspective for the International Society for
Computational Biology},
journal = {Bioinform.},
volume = {29},
number = {24},
pages = {3243--3245},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt629},
doi = {10.1093/BIOINFORMATICS/BTT629},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/Rost13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HampKSVSAABBHHHHKKKLMRR13,
author = {Tobias Hamp and
Rebecca Kassner and
Stefan Seemayer and
Esmeralda Vicedo and
Christian Schaefer and
Dominik Achten and
Florian Auer and
Ariane Boehm and
Tatjana Braun and
Maximilian Hecht and
Mark Heron and
Peter H{\"{o}}nigschmid and
Thomas A. Hopf and
Stefanie Kaufmann and
Michael Kiening and
Denis Krompass and
Cedric Landerer and
Yannick Mahlich and
Manfred Roos and
Burkhard Rost},
title = {Homology-based inference sets the bar high for protein function prediction},
journal = {{BMC} Bioinform.},
volume = {14},
number = {{S-3}},
pages = {S7},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-S3-S7},
doi = {10.1186/1471-2105-14-S3-S7},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HampKSVSAABBHHHHKKKLMRR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BatemanKMMDALRR13,
author = {Alex Bateman and
Janet Kelso and
Daniel Mietchen and
Geoff MacIntyre and
Tom{\'{a}}s Di Domenico and
Thomas Abeel and
Darren W. Logan and
Predrag Radivojac and
Burkhard Rost},
title = {{ISCB} Computational Biology Wikipedia Competition},
journal = {PLoS Comput. Biol.},
volume = {9},
number = {9},
year = {2013},
url = {https://doi.org/10.1371/journal.pcbi.1003242},
doi = {10.1371/JOURNAL.PCBI.1003242},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/BatemanKMMDALRR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchaeferMRB12,
author = {Christian Schaefer and
Alice Meier and
Burkhard Rost and
Yana Bromberg},
title = {SNPdbe: constructing an nsSNP functional impacts database},
journal = {Bioinform.},
volume = {28},
number = {4},
pages = {601--602},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr705},
doi = {10.1093/BIOINFORMATICS/BTR705},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchaeferMRB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GoldbergHR12,
author = {Tatyana Goldberg and
Tobias Hamp and
Burkhard Rost},
title = {LocTree2 predicts localization for all domains of life},
journal = {Bioinform.},
volume = {28},
number = {18},
pages = {458--465},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts390},
doi = {10.1093/BIOINFORMATICS/BTS390},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoldbergHR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RostGLLMMSHK12,
author = {Burkhard Rost and
Terry Gaasterland and
Thomas Lengauer and
Michal Linial and
Scott Markel and
B. J. Morrison McKay and
Reinhard Schneider and
Paul Horton and
Janet Kelso},
title = {Paving the future: finding suitable {ISMB} venues},
journal = {Bioinform.},
volume = {28},
number = {19},
pages = {2556--2559},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts420},
doi = {10.1093/BIOINFORMATICS/BTS420},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RostGLLMMSHK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/HampR12,
author = {Tobias Hamp and
Burkhard Rost},
title = {Alternative Protein-Protein Interfaces Are Frequent Exceptions},
journal = {PLoS Comput. Biol.},
volume = {8},
number = {8},
year = {2012},
url = {https://doi.org/10.1371/journal.pcbi.1002623},
doi = {10.1371/JOURNAL.PCBI.1002623},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/HampR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RanganathanSKRNT11,
author = {Shoba Ranganathan and
Christian Sch{\"{o}}nbach and
Janet Kelso and
Burkhard Rost and
Sheila Nathan and
Tin Wee Tan},
title = {Towards big data science in the decade ahead from ten years of InCoB
and the 1st ISCB-Asia Joint Conference},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-13}},
pages = {S1},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S13-S1},
doi = {10.1186/1471-2105-12-S13-S1},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RanganathanSKRNT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RastogiR11,
author = {Shruti Rastogi and
Burkhard Rost},
title = {LocDB: experimental annotations of localization for \emph{Homo sapiens}
and \emph{Arabidopsis thaliana}},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {230--234},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq927},
doi = {10.1093/NAR/GKQ927},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/RastogiR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LathropR11,
author = {Richard H. Lathrop and
Burkhard Rost},
title = {{ISCB} Public Policy Statement on Open Access to Scientific and Technical
Research Literature},
journal = {PLoS Comput. Biol.},
volume = {7},
number = {2},
year = {2011},
url = {https://doi.org/10.1371/journal.pcbi.1002014},
doi = {10.1371/JOURNAL.PCBI.1002014},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/LathropR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchaeferSR10,
author = {Christian Schaefer and
Avner Schlessinger and
Burkhard Rost},
title = {Protein secondary structure appears to be robust under \emph{in silico}
evolution while protein disorder appears not to be},
journal = {Bioinform.},
volume = {26},
number = {5},
pages = {625--631},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq012},
doi = {10.1093/BIOINFORMATICS/BTQ012},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchaeferSR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WainrebABSHRARB10,
author = {Gilad Wainreb and
Haim Ashkenazy and
Yana Bromberg and
Alina Starovolsky{-}Shitrit and
Turkan Haliloglu and
Eytan Ruppin and
Karen B. Avraham and
Burkhard Rost and
Nir Ben{-}Tal},
title = {MuD: an interactive web server for the prediction of non-neutral substitutions
using protein structural data},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Web-Server-Issue},
pages = {523--528},
year = {2010},
url = {https://doi.org/10.1093/nar/gkq528},
doi = {10.1093/NAR/GKQ528},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WainrebABSHRARB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BrombergR09,
author = {Yana Bromberg and
Burkhard Rost},
title = {Correlating protein function and stability through the analysis of
single amino acid substitutions},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-8}},
pages = {8},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S8-S8},
doi = {10.1186/1471-2105-10-S8-S8},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BrombergR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/09/PuntaR09,
author = {Marco Punta and
Burkhard Rost},
editor = {David J. Livingstone},
title = {Neural Networks Predict Protein Structure and Function},
booktitle = {Artificial Neural Networks},
series = {Methods in Molecular Biology},
volume = {458},
pages = {198--225},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-1-60327-101-1\_11},
doi = {10.1007/978-1-60327-101-1\_11},
timestamp = {Wed, 16 Dec 2020 16:45:37 +0100},
biburl = {https://dblp.org/rec/books/sp/09/PuntaR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PrzybylskiR08,
author = {Dariusz Przybylski and
Burkhard Rost},
title = {Powerful fusion: {PSI-BLAST} and consensus sequences},
journal = {Bioinform.},
volume = {24},
number = {18},
pages = {1987--1993},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn384},
doi = {10.1093/BIOINFORMATICS/BTN384},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PrzybylskiR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LippiPPRF08,
author = {Marco Lippi and
Andrea Passerini and
Marco Punta and
Burkhard Rost and
Paolo Frasconi},
title = {MetalDetector: a web server for predicting metal-binding sites and
disulfide bridges in proteins from sequence},
journal = {Bioinform.},
volume = {24},
number = {18},
pages = {2094--2095},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn371},
doi = {10.1093/BIOINFORMATICS/BTN371},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LippiPPRF08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrombergYR08,
author = {Yana Bromberg and
Guy Yachdav and
Burkhard Rost},
title = {{SNAP} predicts effect of mutations on protein function},
journal = {Bioinform.},
volume = {24},
number = {20},
pages = {2397--2398},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn435},
doi = {10.1093/BIOINFORMATICS/BTN435},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrombergYR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SoongWR08,
author = {Ta{-}tsen Soong and
Kazimierz O. Wrzeszczynski and
Burkhard Rost},
title = {Physical protein-protein interactions predicted from microarrays},
journal = {Bioinform.},
volume = {24},
number = {22},
pages = {2608--2614},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn498},
doi = {10.1093/BIOINFORMATICS/BTN498},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SoongWR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LinialMMR08,
author = {Michal Linial and
Jill P. Mesirov and
B. J. Morrison McKay and
Burkhard Rost},
title = {{ISMB} 2008 Toronto},
journal = {PLoS Comput. Biol.},
volume = {4},
number = {6},
year = {2008},
url = {https://doi.org/10.1371/journal.pcbi.1000094},
doi = {10.1371/JOURNAL.PCBI.1000094},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/LinialMMR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/BrombergR08,
author = {Yana Bromberg and
Burkhard Rost},
title = {Comprehensive \emph{in silico} mutagenesis highlights functionally
important residues in proteins},
booktitle = {ECCB'08 Proceedings, Seventh European Conference on Computational
Biology, 22-26 September 2008, Cagliari, Italy},
pages = {207--212},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn268},
doi = {10.1093/BIOINFORMATICS/BTN268},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eccb/BrombergR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OfranR07,
author = {Yanay Ofran and
Burkhard Rost},
title = {{ISIS:} interaction sites identified from sequence},
journal = {Bioinform.},
volume = {23},
number = {2},
pages = {13--16},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btl303},
doi = {10.1093/BIOINFORMATICS/BTL303},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OfranR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchlessingerPR07,
author = {Avner Schlessinger and
Marco Punta and
Burkhard Rost},
title = {Natively unstructured regions in proteins identified from contact
predictions},
journal = {Bioinform.},
volume = {23},
number = {18},
pages = {2376--2384},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm349},
doi = {10.1093/BIOINFORMATICS/BTM349},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchlessingerPR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LengauerMR07,
author = {Thomas Lengauer and
B. J. Morrison McKay and
Burkhard Rost},
title = {{ISMB/ECCB} 2007: The Premier Conference on Computational Biology},
journal = {PLoS Comput. Biol.},
volume = {3},
number = {5},
year = {2007},
url = {https://doi.org/10.1371/journal.pcbi.0030096},
doi = {10.1371/JOURNAL.PCBI.0030096},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/LengauerMR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/OfranR07,
author = {Yanay Ofran and
Burkhard Rost},
title = {Protein-Protein Interaction Hotspots Carved into Sequences},
journal = {PLoS Comput. Biol.},
volume = {3},
number = {7},
year = {2007},
url = {https://doi.org/10.1371/journal.pcbi.0030119},
doi = {10.1371/JOURNAL.PCBI.0030119},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/OfranR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SchlessingerLR07,
author = {Avner Schlessinger and
Jinfeng Liu and
Burkhard Rost},
title = {Natively Unstructured Loops Differ from Other Loops},
journal = {PLoS Comput. Biol.},
volume = {3},
number = {7},
year = {2007},
url = {https://doi.org/10.1371/journal.pcbi.0030140},
doi = {10.1371/JOURNAL.PCBI.0030140},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/SchlessingerLR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/OfranMR07,
author = {Yanay Ofran and
Venkatesh Mysore and
Burkhard Rost},
title = {Prediction of DNA-binding residues from sequence},
booktitle = {Proceedings 15th International Conference on Intelligent Systems for
Molecular Biology {(ISMB)} {\&} 6th European Conference on Computational
Biology (ECCB), Vienna, Austria, July 21-25, 2007},
pages = {347--353},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm174},
doi = {10.1093/BIOINFORMATICS/BTM174},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/OfranMR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchlessingerYR06,
author = {Avner Schlessinger and
Guy Yachdav and
Burkhard Rost},
title = {PROFbval: predict flexible and rigid residues in proteins},
journal = {Bioinform.},
volume = {22},
number = {7},
pages = {891--893},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl032},
doi = {10.1093/BIOINFORMATICS/BTL032},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchlessingerYR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SchlessingerOYR06,
author = {Avner Schlessinger and
Yanay Ofran and
Guy Yachdav and
Burkhard Rost},
title = {Epitome: database of structure-inferred antigenic epitopes},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {777--780},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj053},
doi = {10.1093/NAR/GKJ053},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/SchlessingerOYR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BigelowR06,
author = {Henry R. Bigelow and
Burkhard Rost},
title = {PROFtmb: a web server for predicting bacterial transmembrane beta
barrel proteins},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Web-Server-Issue},
pages = {186--188},
year = {2006},
url = {https://doi.org/10.1093/nar/gkl262},
doi = {10.1093/NAR/GKL262},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/BigelowR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MikaR06,
author = {Sven Mika and
Burkhard Rost},
title = {Protein-Protein Interactions More Conserved within Species than across
Species},
journal = {PLoS Comput. Biol.},
volume = {2},
number = {7},
year = {2006},
url = {https://doi.org/10.1371/journal.pcbi.0020079},
doi = {10.1371/JOURNAL.PCBI.0020079},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/MikaR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/OfranYMSNR06,
author = {Yanay Ofran and
Guy Yachdav and
Eyal Mozes and
Ta{-}tsen Soong and
Rajesh Nair and
Burkhard Rost},
title = {Create and assess protein networks through molecular characteristics
of individual proteins},
booktitle = {Proceedings 14th International Conference on Intelligent Systems for
Molecular Biology 2006, Fortaleza, Brazil, August 6-10, 2006},
pages = {402--407},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl258},
doi = {10.1093/BIOINFORMATICS/BTL258},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/OfranYMSNR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PuntaR05,
author = {Marco Punta and
Burkhard Rost},
title = {PROFcon: novel prediction of long-range contacts},
journal = {Bioinform.},
volume = {21},
number = {13},
pages = {2960--2968},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti454},
doi = {10.1093/BIOINFORMATICS/BTI454},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PuntaR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MikaR05,
author = {Sven Mika and
Burkhard Rost},
title = {NMPdb: Database of Nuclear Matrix Proteins},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {160--163},
year = {2005},
url = {https://doi.org/10.1093/nar/gki132},
doi = {10.1093/NAR/GKI132},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MikaR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GranaEPRV05,
author = {Osvaldo Gra{\~{n}}a and
Volker A. Eyrich and
Florencio Pazos and
Burkhard Rost and
Alfonso Valencia},
title = {EVAcon: a protein contact prediction evaluation service},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Web-Server-Issue},
pages = {347--351},
year = {2005},
url = {https://doi.org/10.1093/nar/gki411},
doi = {10.1093/NAR/GKI411},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GranaEPRV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/JagadishSR05,
author = {H. V. Jagadish and
David J. States and
Burkhard Rost},
title = {{ISMB} 2005},
booktitle = {Proceedings Thirteenth International Conference on Intelligent Systems
for Molecular Biology 2005, Detroit, MI, USA, 25-29 June 2005},
pages = {1--2},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1057},
doi = {10.1093/BIOINFORMATICS/BTI1057},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/JagadishSR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/JagadishSR05a,
author = {H. V. Jagadish and
David J. States and
Burkhard Rost},
title = {{ISMB} 2005 Organization},
booktitle = {Proceedings Thirteenth International Conference on Intelligent Systems
for Molecular Biology 2005, Detroit, MI, USA, 25-29 June 2005},
pages = {3--6},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1056},
doi = {10.1093/BIOINFORMATICS/BTI1056},
timestamp = {Wed, 24 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/JagadishSR05a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aim/GlasgowJR04,
author = {Janice I. Glasgow and
Igor Jurisica and
Burkhard Rost},
title = {{AI} and Bioinformatics},
journal = {{AI} Mag.},
volume = {25},
number = {1},
pages = {7--8},
year = {2004},
url = {https://doi.org/10.1609/aimag.v25i1.1743},
doi = {10.1609/AIMAG.V25I1.1743},
timestamp = {Tue, 25 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/aim/GlasgowJR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aim/NairR04,
author = {Rajesh Nair and
Burkhard Rost},
title = {Annotating Protein Function through Lexical Analysis},
journal = {{AI} Mag.},
volume = {25},
number = {1},
pages = {45--56},
year = {2004},
url = {https://doi.org/10.1609/aimag.v25i1.1746},
doi = {10.1609/AIMAG.V25I1.1746},
timestamp = {Tue, 25 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/aim/NairR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RostYL04,
author = {Burkhard Rost and
Guy Yachdav and
Jinfeng Liu},
title = {The PredictProtein server},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Web-Server-Issue},
pages = {321--326},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh377},
doi = {10.1093/NAR/GKH377},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/RostYL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NairR04,
author = {Rajesh Nair and
Burkhard Rost},
title = {LOCnet and LOCtarget: sub-cellular localization for structural genomics
targets},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Web-Server-Issue},
pages = {517--521},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh441},
doi = {10.1093/NAR/GKH441},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/NairR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiuR04,
author = {Jinfeng Liu and
Burkhard Rost},
title = {{CHOP:} parsing proteins into structural domains},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Web-Server-Issue},
pages = {569--571},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh481},
doi = {10.1093/NAR/GKH481},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LiuR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MikaR04,
author = {Sven Mika and
Burkhard Rost},
title = {NLProt: extracting protein names and sequences from papers},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Web-Server-Issue},
pages = {634--637},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh427},
doi = {10.1093/NAR/GKH427},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MikaR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/MikaR04,
author = {Sven Mika and
Burkhard Rost},
title = {Protein names precisely peeled off free text},
booktitle = {Proceedings Twelfth International Conference on Intelligent Systems
for Molecular Biology/Third European Conference on Computational Biology
2004, Glasgow, UK, July 31-August 4, 2004},
pages = {241--247},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth904},
doi = {10.1093/BIOINFORMATICS/BTH904},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/MikaR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NairCR03,
author = {Rajesh Nair and
Phil Carter and
Burkhard Rost},
title = {NLSdb: database of nuclear localization signals},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {397--399},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg001},
doi = {10.1093/NAR/GKG001},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/NairCR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CarterLR03,
author = {Phil Carter and
Jinfeng Liu and
Burkhard Rost},
title = {{PEP:} Predictions for Entire Proteomes},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {410--413},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg102},
doi = {10.1093/NAR/GKG102},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/CarterLR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CarterAR03,
author = {Phil Carter and
Claus A. F. Andersen and
Burkhard Rost},
title = {DSSPcont: continuous secondary structure assignments for proteins},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3293--3295},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg626},
doi = {10.1093/NAR/GKG626},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/CarterAR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RostL03,
author = {Burkhard Rost and
Jinfeng Liu},
title = {The PredictProtein server},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3300--3304},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg508},
doi = {10.1093/NAR/GKG508},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/RostL03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/EyrichR03,
author = {Volker A. Eyrich and
Burkhard Rost},
title = {{META-PP:} single interface to crucial prediction servers},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3308--3310},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg572},
doi = {10.1093/NAR/GKG572},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/EyrichR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KohEMPMEGPVSR03,
author = {Ingrid Y. Y. Koh and
Volker A. Eyrich and
Marc A. Mart{\'{\i}}{-}Renom and
Dariusz Przybylski and
Mallur S. Madhusudhan and
Narayanan Eswar and
Osvaldo Gra{\~{n}}a and
Florencio Pazos and
Alfonso Valencia and
Andrej Sali and
Burkhard Rost},
title = {{EVA:} evaluation of protein structure prediction servers},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3311--3315},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg619},
doi = {10.1093/NAR/GKG619},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KohEMPMEGPVSR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NairR03,
author = {Rajesh Nair and
Burkhard Rost},
title = {{LOC3D:} annotate sub-cellular localization for protein structures},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3337--3340},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg514},
doi = {10.1093/NAR/GKG514},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/NairR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KernytskyR03,
author = {Andrew Kernytsky and
Burkhard Rost},
title = {Static benchmarking of membrane helix predictions},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3642--3644},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg532},
doi = {10.1093/NAR/GKG532},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KernytskyR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MikaR03,
author = {Sven Mika and
Burkhard Rost},
title = {UniqueProt: creating representative protein sequence sets},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3789--3791},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg620},
doi = {10.1093/NAR/GKG620},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MikaR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiuR03,
author = {Jinfeng Liu and
Burkhard Rost},
title = {NORSp: predictions of long regions without regular secondary structure},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3833--3835},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg515},
doi = {10.1093/NAR/GKG515},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LiuR03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RostHV02,
author = {Burkhard Rost and
Barry Honig and
Alfonso Valencia},
title = {Bioinformatics in structural genomics - Editorial},
journal = {Bioinform.},
volume = {18},
number = {7},
pages = {897},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.7.897},
doi = {10.1093/BIOINFORMATICS/18.7.897},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RostHV02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuR02,
author = {Jinfeng Liu and
Burkhard Rost},
title = {Target space for structural genomics revisited},
journal = {Bioinform.},
volume = {18},
number = {7},
pages = {922--933},
year = {2002},
url = {https://doi.org/10.1093/bioinformatics/18.7.922},
doi = {10.1093/BIOINFORMATICS/18.7.922},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuR02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/GlasgowR02,
author = {Janice I. Glasgow and
Burkhard Rost},
title = {{ISMB} 2002},
booktitle = {Proceedings of the Tenth International Conference on Intelligent Systems
for Molecular Biology, August 3-7, 2002, Edmonton, Alberta, Canada},
pages = {1--4},
year = {2002},
timestamp = {Wed, 29 Jun 2011 14:55:41 +0200},
biburl = {https://dblp.org/rec/conf/ismb/GlasgowR02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/NairR02,
author = {Rajesh Nair and
Burkhard Rost},
title = {Inferring sub-cellular localization through automated lexical analysis},
booktitle = {Proceedings of the Tenth International Conference on Intelligent Systems
for Molecular Biology, August 3-7, 2002, Edmonton, Alberta, Canada},
pages = {78--86},
year = {2002},
timestamp = {Thu, 14 Nov 2002 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/NairR02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EyrichMPMFPVSR01,
author = {Volker A. Eyrich and
Marc A. Mart{\'{\i}}{-}Renom and
Dariusz Przybylski and
Mallur S. Madhusudhan and
Andr{\'{a}}s Fiser and
Florencio Pazos and
Alfonso Valencia and
Andrej Sali and
Burkhard Rost},
title = {{EVA:} continuous automatic evaluation of protein structure prediction
servers},
journal = {Bioinform.},
volume = {17},
number = {12},
pages = {1242--1243},
year = {2001},
url = {https://doi.org/10.1093/bioinformatics/17.12.1242},
doi = {10.1093/BIOINFORMATICS/17.12.1242},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/EyrichMPMFPVSR01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PazosRV99,
author = {Florencio Pazos and
Burkhard Rost and
Alfonso Valencia},
title = {A platform for integrating threading results with protein family analyses},
journal = {Bioinform.},
volume = {15},
number = {12},
pages = {1062--1063},
year = {1999},
url = {https://doi.org/10.1093/bioinformatics/15.12.1062},
doi = {10.1093/BIOINFORMATICS/15.12.1062},
timestamp = {Sat, 19 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/PazosRV99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RostO97,
author = {Burkhard Rost and
Se{\'{a}}n I. O'Donoghue},
title = {Sisyphus and prediction of protein structure},
journal = {Comput. Appl. Biosci.},
volume = {13},
number = {4},
pages = {345--356},
year = {1997},
url = {https://doi.org/10.1093/bioinformatics/13.4.345},
doi = {10.1093/BIOINFORMATICS/13.4.345},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RostO97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcec/Rost97,
author = {Burkhard Rost},
editor = {Dan Lundh and
Bj{\"{o}}rn Olsson and
Ajit Narayanan},
title = {Learning from Evolution to Predict Protein Structure},
booktitle = {Biocomputing and emergent computation: Proceedings of {BCEC97}},
pages = {87--101},
publisher = {World Scientific},
year = {1997},
timestamp = {Wed, 17 Apr 2002 08:04:44 +0200},
biburl = {https://dblp.org/rec/conf/bcec/Rost97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/RostCF96,
author = {Burkhard Rost and
Rita Casadio and
Piero Fariselli},
editor = {David J. States and
Pankaj Agarwal and
Terry Gaasterland and
Lawrence Hunter and
Randall Smith},
title = {Refining Neural Network Predictions for Helical Transmembrane Proteins
by Dynamic Programming},
booktitle = {Proceedings of the Fourth International Conference on Intelligent
Systems for Molecular Biology, St. Louis, MO, USA, June 12-15 1996},
pages = {192--200},
publisher = {{AAAI}},
year = {1996},
url = {http://www.aaai.org/Library/ISMB/1996/ismb96-021.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/RostCF96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/Rost95,
author = {Burkhard Rost},
editor = {Christopher J. Rawlings and
Dominic A. Clark and
Russ B. Altman and
Lawrence Hunter and
Thomas Lengauer and
Shoshana J. Wodak},
title = {{TOPITS:} Threading One-Dimensional Predictions Into Three-Dimensional
Structures},
booktitle = {Proceedings of the Third International Conference on Intelligent Systems
for Molecular Biology, Cambridge, United Kingdom, July 16-19, 1995},
pages = {314--321},
publisher = {{AAAI}},
year = {1995},
url = {http://www.aaai.org/Library/ISMB/1995/ismb95-038.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/Rost95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/dnb/Rost94a,
author = {Burkhard Rost},
title = {Neuronale Netzwerke und evolution{\"{a}}re Information: verbesserte
Vorhersage der Sekund{\"{a}}rstruktur von Proteinen ; (abgefasst
in Englisch)},
school = {University of Heidelberg, Germany},
year = {1994},
url = {https://d-nb.info/94189519X},
timestamp = {Sat, 17 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/dnb/Rost94a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RostSS94,
author = {Burkhard Rost and
Chris Sander and
Reinhard Schneider},
title = {{PHD} - an automatic mail server for protein secondary structure prediction},
journal = {Comput. Appl. Biosci.},
volume = {10},
number = {1},
pages = {53--60},
year = {1994},
url = {https://doi.org/10.1093/bioinformatics/10.1.53},
doi = {10.1093/BIOINFORMATICS/10.1.53},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/RostSS94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hicss/RostSS94,
author = {Burkhard Rost and
Chris Sander and
Reinhard Schneider},
title = {Evolution and Neural Networks - Protein Secondary Structure Prediction
Above 71{\%} Accuracy},
booktitle = {27th Annual Hawaii International Conference on System Sciences (HICSS-27),
January 4-7, 1994, Maui, Hawaii, {USA}},
pages = {385--394},
publisher = {{IEEE} Computer Society},
year = {1994},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hicss/RostSS94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijns/RostS92,
author = {Burkhard Rost and
Chris Sander},
title = {Exercising Multi-Layered Networks on Protein Secondary Structure},
journal = {Int. J. Neural Syst.},
volume = {3},
number = {Supplement},
pages = {209--220},
year = {1992},
url = {https://doi.org/10.1142/S0129065792000541},
doi = {10.1142/S0129065792000541},
timestamp = {Sun, 28 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijns/RostS92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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