BibTeX records: Nicole Radde

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@article{DBLP:journals/bioinformatics/WagnerR23,
  author       = {Vincent Wagner and
                  Nicole Radde},
  title        = {The impossible challenge of estimating non-existent moments of the
                  Chemical Master Equation},
  journal      = {Bioinform.},
  volume       = {39},
  number       = {Supplement-1},
  pages        = {440--447},
  year         = {2023},
  url          = {https://doi.org/10.1093/bioinformatics/btad205},
  doi          = {10.1093/BIOINFORMATICS/BTAD205},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WagnerR23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WagnerCOR22,
  author       = {Vincent Wagner and
                  Benjamin Castellaz and
                  Marco Oesting and
                  Nicole Radde},
  title        = {Quasi-Entropy Closure: a fast and reliable approach to close the moment
                  equations of the Chemical Master Equation},
  journal      = {Bioinform.},
  volume       = {38},
  number       = {18},
  pages        = {4352--4359},
  year         = {2022},
  url          = {https://doi.org/10.1093/bioinformatics/btac501},
  doi          = {10.1093/BIOINFORMATICS/BTAC501},
  timestamp    = {Tue, 18 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WagnerCOR22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/JenschTR17,
  author       = {Antje Jensch and
                  Caterina Thomaseth and
                  Nicole Radde},
  title        = {Sampling-based Bayesian approaches reveal the importance of quasi-bistable
                  behavior in cellular decision processes on the example of the {MAPK}
                  signaling pathway in {PC-12} cell lines},
  journal      = {{BMC} Syst. Biol.},
  volume       = {11},
  number       = {1},
  pages        = {11:1--11:15},
  year         = {2017},
  url          = {https://doi.org/10.1186/s12918-017-0392-6},
  doi          = {10.1186/S12918-017-0392-6},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/JenschTR17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GeissenHHHTR16,
  author       = {Eva{-}Maria Geissen and
                  Jan Hasenauer and
                  Stephanie Heinrich and
                  Silke Hauf and
                  Fabian J. Theis and
                  Nicole Radde},
  title        = {{MEMO:} multi-experiment mixture model analysis of censored data},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {16},
  pages        = {2464--2472},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btw190},
  doi          = {10.1093/BIOINFORMATICS/BTW190},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GeissenHHHTR16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/WeberHOHR15,
  author       = {Patrick Weber and
                  Mariana Hornjik and
                  Monilola A. Olayioye and
                  Angelika Hausser and
                  Nicole Radde},
  title        = {A computational model of {PKD} and {CERT} interactions at the trans-Golgi
                  network of mammalian cells},
  journal      = {{BMC} Syst. Biol.},
  volume       = {9},
  pages        = {9},
  year         = {2015},
  url          = {https://doi.org/10.1186/s12918-015-0147-1},
  doi          = {10.1186/S12918-015-0147-1},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/WeberHOHR15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KramerSGR14,
  author       = {Andrei Kramer and
                  Vassilios Stathopoulos and
                  Mark A. Girolami and
                  Nicole Radde},
  title        = {mcmc{\_}clib-an advanced {MCMC} sampling package for ode models},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {20},
  pages        = {2991--2992},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btu429},
  doi          = {10.1093/BIOINFORMATICS/BTU429},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KramerSGR14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KramerCR14,
  author       = {Andrei Kramer and
                  Ben Calderhead and
                  Nicole Radde},
  title        = {Hamiltonian Monte Carlo methods for efficient parameter estimation
                  in steady state dynamical systems},
  journal      = {{BMC} Bioinform.},
  volume       = {15},
  pages        = {253},
  year         = {2014},
  url          = {https://doi.org/10.1186/1471-2105-15-253},
  doi          = {10.1186/1471-2105-15-253},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/KramerCR14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VehlowHKRHTRTW13,
  author       = {Corinna Vehlow and
                  Jan Hasenauer and
                  Andrei Kramer and
                  Andreas Raue and
                  Sabine Hug and
                  Jens Timmer and
                  Nicole Radde and
                  Fabian J. Theis and
                  Daniel Weiskopf},
  title        = {iVUN: interactive Visualization of Uncertain biochemical reaction
                  Networks},
  journal      = {{BMC} Bioinform.},
  volume       = {14},
  number       = {{S-19}},
  pages        = {S2},
  year         = {2013},
  url          = {https://doi.org/10.1186/1471-2105-14-S19-S2},
  doi          = {10.1186/1471-2105-14-S19-S2},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/VehlowHKRHTRTW13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WeberKDR12,
  author       = {Patrick Weber and
                  Andrei Kramer and
                  Clemens Dingler and
                  Nicole Radde},
  title        = {Trajectory-oriented Bayesian experiment design versus Fisher A-optimal
                  design: an in depth comparison study},
  journal      = {Bioinform.},
  volume       = {28},
  number       = {18},
  pages        = {535--541},
  year         = {2012},
  url          = {https://doi.org/10.1093/bioinformatics/bts377},
  doi          = {10.1093/BIOINFORMATICS/BTS377},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/WeberKDR12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/Radde12,
  author       = {Nicole Radde},
  title        = {Analyzing fixed points of intracellular regulation networks with interrelated
                  feedback topology},
  journal      = {{BMC} Syst. Biol.},
  volume       = {6},
  pages        = {57},
  year         = {2012},
  url          = {https://doi.org/10.1186/1752-0509-6-57},
  doi          = {10.1186/1752-0509-6-57},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/Radde12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biovis/VehlowHKHRAW12,
  author       = {Corinna Vehlow and
                  Jan Hasenauer and
                  Andrei Kramer and
                  Julian Heinrich and
                  Nicole Radde and
                  Frank Allg{\"{o}}wer and
                  Daniel Weiskopf},
  title        = {Uncertainty-aware visual analysis of biochemical reaction networks},
  booktitle    = {2012 {IEEE} Symposium on Biological Data Visualization, BioVis 2011,
                  Seattle, WA, USA, October 14-15, 2012},
  pages        = {91--98},
  publisher    = {{IEEE} Computer Society},
  year         = {2012},
  url          = {https://doi.org/10.1109/BioVis.2012.6378598},
  doi          = {10.1109/BIOVIS.2012.6378598},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/biovis/VehlowHKHRAW12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HasenauerWDRSA11,
  author       = {Jan Hasenauer and
                  Steffen Waldherr and
                  Malgorzata Doszczak and
                  Nicole Radde and
                  Peter Scheurich and
                  Frank Allg{\"{o}}wer},
  title        = {Identification of models of heterogeneous cell populations from population
                  snapshot data},
  journal      = {{BMC} Bioinform.},
  volume       = {12},
  pages        = {125},
  year         = {2011},
  url          = {https://doi.org/10.1186/1471-2105-12-125},
  doi          = {10.1186/1471-2105-12-125},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/HasenauerWDRSA11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Radde10,
  author       = {Nicole Radde},
  title        = {Fixed point characterization of biological networks with complex graph
                  topology},
  journal      = {Bioinform.},
  volume       = {26},
  number       = {22},
  pages        = {2874--2880},
  year         = {2010},
  url          = {https://doi.org/10.1093/bioinformatics/btq517},
  doi          = {10.1093/BIOINFORMATICS/BTQ517},
  timestamp    = {Sun, 08 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Radde10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijsysc/RaddeBB10,
  author       = {Nicole Radde and
                  Nadav S. Bar and
                  Murad Banaji},
  title        = {Graphical methods for analysing feedback in biological networks -
                  {A} survey},
  journal      = {Int. J. Syst. Sci.},
  volume       = {41},
  number       = {1},
  pages        = {35--46},
  year         = {2010},
  url          = {https://doi.org/10.1080/00207720903151326},
  doi          = {10.1080/00207720903151326},
  timestamp    = {Wed, 22 Jul 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ijsysc/RaddeBB10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/IEEEcca/WaldherrAR10,
  author       = {Steffen Waldherr and
                  Frank Allg{\"{o}}wer and
                  Nicole Radde},
  title        = {Generic Bifurcations in the Dynamics of Biochemical Networks},
  booktitle    = {Proceedings of the {IEEE} International Conference on Control Applications,
                  {CCA} 2010, Yokohama, Japan, September 8-10, 2010},
  pages        = {135--141},
  publisher    = {{IEEE}},
  year         = {2010},
  url          = {https://doi.org/10.1109/CCA.2010.5611139},
  doi          = {10.1109/CCA.2010.5611139},
  timestamp    = {Wed, 16 Oct 2019 14:14:51 +0200},
  biburl       = {https://dblp.org/rec/conf/IEEEcca/WaldherrAR10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/IEEEcca/KramerHAR10,
  author       = {Andrei Kramer and
                  Jan Hasenauer and
                  Frank Allg{\"{o}}wer and
                  Nicole Radde},
  title        = {Computation of the Posterior Entropy in a Bayesian Framework for Parameter
                  Estimation in Biological Networks},
  booktitle    = {Proceedings of the {IEEE} International Conference on Control Applications,
                  {CCA} 2010, Yokohama, Japan, September 8-10, 2010},
  pages        = {493--498},
  publisher    = {{IEEE}},
  year         = {2010},
  url          = {https://doi.org/10.1109/CCA.2010.5611198},
  doi          = {10.1109/CCA.2010.5611198},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/IEEEcca/KramerHAR10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/procedia/KramerR10,
  author       = {Andrei Kramer and
                  Nicole Radde},
  editor       = {Peter M. A. Sloot and
                  G. Dick van Albada and
                  Jack J. Dongarra},
  title        = {Towards experimental design using a Bayesian framework for parameter
                  identification in dynamic intracellular network models},
  booktitle    = {Proceedings of the International Conference on Computational Science,
                  {ICCS} 2010, University of Amsterdam, The Netherlands, May 31 - June
                  2, 2010},
  series       = {Procedia Computer Science},
  volume       = {1},
  number       = {1},
  pages        = {1645--1653},
  publisher    = {Elsevier},
  year         = {2010},
  url          = {https://doi.org/10.1016/j.procs.2010.04.184},
  doi          = {10.1016/J.PROCS.2010.04.184},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/procedia/KramerR10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/procedia/HasenauerWRDSA10,
  author       = {Jan Hasenauer and
                  Steffen Waldherr and
                  Nicole Radde and
                  Malgorzata Doszczak and
                  Peter Scheurich and
                  Frank Allg{\"{o}}wer},
  editor       = {Peter M. A. Sloot and
                  G. Dick van Albada and
                  Jack J. Dongarra},
  title        = {A maximum likelihood estimator for parameter distributions in heterogeneous
                  cell populations},
  booktitle    = {Proceedings of the International Conference on Computational Science,
                  {ICCS} 2010, University of Amsterdam, The Netherlands, May 31 - June
                  2, 2010},
  series       = {Procedia Computer Science},
  volume       = {1},
  number       = {1},
  pages        = {1655--1663},
  publisher    = {Elsevier},
  year         = {2010},
  url          = {https://doi.org/10.1016/j.procs.2010.04.185},
  doi          = {10.1016/J.PROCS.2010.04.185},
  timestamp    = {Wed, 27 Jul 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/procedia/HasenauerWRDSA10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BarR09,
  author       = {Nadav S. Bar and
                  Nicole Radde},
  title        = {Long-term prediction of fish growth under varying ambient temperature
                  using a multiscale dynamic model},
  journal      = {{BMC} Syst. Biol.},
  volume       = {3},
  pages        = {107},
  year         = {2009},
  url          = {https://doi.org/10.1186/1752-0509-3-107},
  doi          = {10.1186/1752-0509-3-107},
  timestamp    = {Tue, 05 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcsb/BarR09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/GebertRFSB09,
  author       = {Jutta Gebert and
                  Nicole Radde and
                  Ulrich Faigle and
                  Julia Str{\"{o}}sser and
                  Andreas Burkovski},
  title        = {Modeling and simulation of nitrogen regulation in Corynebacterium
                  glutamicum},
  journal      = {Discret. Appl. Math.},
  volume       = {157},
  number       = {10},
  pages        = {2232--2243},
  year         = {2009},
  url          = {https://doi.org/10.1016/j.dam.2008.06.055},
  doi          = {10.1016/J.DAM.2008.06.055},
  timestamp    = {Thu, 11 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/dam/GebertRFSB09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/RaddeK09,
  author       = {Nicole Radde and
                  Lars Kaderali},
  title        = {Inference of an oscillating model for the yeast cell cycle},
  journal      = {Discret. Appl. Math.},
  volume       = {157},
  number       = {10},
  pages        = {2285--2295},
  year         = {2009},
  url          = {https://doi.org/10.1016/j.dam.2008.06.036},
  doi          = {10.1016/J.DAM.2008.06.036},
  timestamp    = {Thu, 11 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/dam/RaddeK09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ejbsb/Radde09,
  author       = {Nicole Radde},
  title        = {The Impact of Time Delays on the Robustness of Biological Oscillators
                  and the Effect of Bifurcations on the Inverse Problem},
  journal      = {{EURASIP} J. Bioinform. Syst. Biol.},
  volume       = {2009},
  year         = {2009},
  url          = {https://doi.org/10.1155/2009/327503},
  doi          = {10.1155/2009/327503},
  timestamp    = {Thu, 18 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ejbsb/Radde09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/advcs/Radde08,
  author       = {Nicole Radde},
  title        = {The Effect of Time Scale Differences and Time Delays on the Structural
                  Stability of oscillations in a Two-Gene Network},
  journal      = {Adv. Complex Syst.},
  volume       = {11},
  number       = {3},
  pages        = {471--483},
  year         = {2008},
  url          = {https://doi.org/10.1142/S0219525908001751},
  doi          = {10.1142/S0219525908001751},
  timestamp    = {Thu, 08 Oct 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/advcs/Radde08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/sci/KaderaliR08,
  author       = {Lars Kaderali and
                  Nicole Radde},
  editor       = {Arpad Kelemen and
                  Ajith Abraham and
                  Yuehui Chen},
  title        = {Inferring Gene Regulatory Networks from Expression Data},
  booktitle    = {Computational Intelligence in Bioinformatics},
  series       = {Studies in Computational Intelligence},
  volume       = {94},
  pages        = {33--74},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-76803-6\_2},
  doi          = {10.1007/978-3-540-76803-6\_2},
  timestamp    = {Wed, 14 Aug 2019 15:22:25 +0200},
  biburl       = {https://dblp.org/rec/series/sci/KaderaliR08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/basesearch/Radde07,
  author       = {Nicole Radde},
  title        = {Modeling Non-Linear Dynamic Phenomena in Biochemical Networks},
  school       = {University of Cologne, Germany},
  year         = {2007},
  url          = {https://kups.ub.uni-koeln.de/2221/},
  timestamp    = {Wed, 13 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/phd/basesearch/Radde07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/eor/GebertRW07,
  author       = {Jutta Gebert and
                  Nicole Radde and
                  Gerhard{-}Wilhelm Weber},
  title        = {Modeling gene regulatory networks with piecewise linear differential
                  equations},
  journal      = {Eur. J. Oper. Res.},
  volume       = {181},
  number       = {3},
  pages        = {1148--1165},
  year         = {2007},
  url          = {https://doi.org/10.1016/j.ejor.2005.11.044},
  doi          = {10.1016/J.EJOR.2005.11.044},
  timestamp    = {Fri, 21 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/eor/GebertRW07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bird/RaddeK07,
  author       = {Nicole Radde and
                  Lars Kaderali},
  editor       = {Sepp Hochreiter and
                  Roland Wagner},
  title        = {Bayesian Inference of Gene Regulatory Networks Using Gene Expression
                  Time Series Data},
  booktitle    = {Bioinformatics Research and Development, First International Conference,
                  {BIRD} 2007, Berlin, Germany, March 12-14, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4414},
  pages        = {1--15},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-71233-6\_1},
  doi          = {10.1007/978-3-540-71233-6\_1},
  timestamp    = {Tue, 14 May 2019 10:00:53 +0200},
  biburl       = {https://dblp.org/rec/conf/bird/RaddeK07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RaddeGF06,
  author       = {Nicole Radde and
                  Jutta Gebert and
                  Christian V. Forst},
  title        = {Systematic component selection for gene-network refinement},
  journal      = {Bioinform.},
  volume       = {22},
  number       = {21},
  pages        = {2674--2680},
  year         = {2006},
  url          = {https://doi.org/10.1093/bioinformatics/btl440},
  doi          = {10.1093/BIOINFORMATICS/BTL440},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RaddeGF06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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