BibTeX records: Matti Pirinen

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@article{DBLP:journals/midm/DrouardMHPRPLWORPRK24,
  author       = {Gabin Drouard and
                  Juha Mykk{\"{a}}nen and
                  Jarkko Heiskanen and
                  Joona Pohjonen and
                  Saku Ruohonen and
                  Katja Pahkala and
                  Terho Lehtim{\"{a}}ki and
                  Xiaoling Wang and
                  Miina Ollikainen and
                  Samuli Ripatti and
                  Matti Pirinen and
                  Olli Raitakari and
                  Jaakko Kaprio},
  title        = {Exploring machine learning strategies for predicting cardiovascular
                  disease risk factors from multi-omic data},
  journal      = {{BMC} Medical Informatics Decis. Mak.},
  volume       = {24},
  number       = {1},
  pages        = {116},
  year         = {2024},
  url          = {https://doi.org/10.1186/s12911-024-02521-3},
  doi          = {10.1186/S12911-024-02521-3},
  timestamp    = {Wed, 08 May 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/midm/DrouardMHPRPLWORPRK24.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/Pirinen23,
  author       = {Matti Pirinen},
  title        = {linemodels: clustering effects based on linear relationships},
  journal      = {Bioinform.},
  volume       = {39},
  number       = {3},
  year         = {2023},
  url          = {https://doi.org/10.1093/bioinformatics/btad115},
  doi          = {10.1093/BIOINFORMATICS/BTAD115},
  timestamp    = {Fri, 22 Mar 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Pirinen23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/artmed/AlabiYPEMLA21,
  author       = {Rasheed Omobolaji Alabi and
                  Omar Youssef and
                  Matti Pirinen and
                  Mohammed Elmusrati and
                  Antti A. M{\"{a}}kitie and
                  Ilmo Leivo and
                  Alhadi Almangush},
  title        = {Machine learning in oral squamous cell carcinoma: Current status,
                  clinical concerns and prospects for future - {A} systematic review},
  journal      = {Artif. Intell. Medicine},
  volume       = {115},
  pages        = {102060},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.artmed.2021.102060},
  doi          = {10.1016/J.ARTMED.2021.102060},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/artmed/AlabiYPEMLA21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/ijmi/AlabiMPELA21,
  author       = {Rasheed Omobolaji Alabi and
                  Antti A. M{\"{a}}kitie and
                  Matti Pirinen and
                  Mohammed Elmusrati and
                  Ilmo Leivo and
                  Alhadi Almangush},
  title        = {Comparison of nomogram with machine learning techniques for prediction
                  of overall survival in patients with tongue cancer},
  journal      = {Int. J. Medical Informatics},
  volume       = {145},
  pages        = {104313},
  year         = {2021},
  url          = {https://doi.org/10.1016/j.ijmedinf.2020.104313},
  doi          = {10.1016/J.IJMEDINF.2020.104313},
  timestamp    = {Mon, 26 Jun 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ijmi/AlabiMPELA21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@inproceedings{DBLP:conf/eScience/ParnPKMSBHSFDPR18,
  author       = {Kalle Parn and
                  Matti Pirinen and
                  Mart Kals and
                  Reedik M{\"{a}}gi and
                  Veikko Salomaa and
                  Michael Boehnke and
                  Ira Hall and
                  Nathan Stitziel and
                  Nelson Freimer and
                  Mark J. Daly and
                  Aarno Palotie and
                  Samuli Ripatti and
                  Priit Palta},
  title        = {Differences in the Commonly used Genotype Imputation Algorithms and
                  Their Imputation Accuracy Estimates},
  booktitle    = {14th {IEEE} International Conference on e-Science, e-Science 2018,
                  Amsterdam, The Netherlands, October 29 - November 1, 2018},
  pages        = {293--294},
  publisher    = {{IEEE} Computer Society},
  year         = {2018},
  url          = {https://doi.org/10.1109/eScience.2018.00058},
  doi          = {10.1109/ESCIENCE.2018.00058},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/eScience/ParnPKMSBHSFDPR18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/PirinenBMJRR17,
  author       = {Matti Pirinen and
                  Christian Benner and
                  Pekka Marttinen and
                  Marjo{-}Riitta J{\"{a}}rvelin and
                  Manuel A. Rivas and
                  Samuli Ripatti},
  title        = {biMM: efficient estimation of genetic variances and covariances for
                  cohorts with high-dimensional phenotype measurements},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {15},
  pages        = {2405--2407},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx166},
  doi          = {10.1093/BIOINFORMATICS/BTX166},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PirinenBMJRR17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/BennerSHSRP16,
  author       = {Christian Benner and
                  Chris C. A. Spencer and
                  Aki S. Havulinna and
                  Veikko Salomaa and
                  Samuli Ripatti and
                  Matti Pirinen},
  title        = {{FINEMAP:} efficient variable selection using summary data from genome-wide
                  association studies},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {10},
  pages        = {1493--1501},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btw018},
  doi          = {10.1093/BIOINFORMATICS/BTW018},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BennerSHSRP16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/CichonskaRMKSLR16,
  author       = {Anna Cichonska and
                  Juho Rousu and
                  Pekka Marttinen and
                  Antti J. Kangas and
                  Pasi Soininen and
                  Terho Lehtim{\"{a}}ki and
                  Olli T. Raitakari and
                  Marjo{-}Riitta J{\"{a}}rvelin and
                  Veikko Salomaa and
                  Mika Ala{-}Korpela and
                  Samuli Ripatti and
                  Matti Pirinen},
  title        = {metaCCA: summary statistics-based multivariate meta-analysis of genome-wide
                  association studies using canonical correlation analysis},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {13},
  pages        = {1981--1989},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btw052},
  doi          = {10.1093/BIOINFORMATICS/BTW052},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CichonskaRMKSLR16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jmlr/GillbergMPKSAHJ16,
  author       = {Jussi Gillberg and
                  Pekka Marttinen and
                  Matti Pirinen and
                  Antti J. Kangas and
                  Pasi Soininen and
                  Mehreen Ali and
                  Aki S. Havulinna and
                  Marjo{-}Riitta J{\"{a}}rvelin and
                  Mika Ala{-}Korpela and
                  Samuel Kaski},
  title        = {Multiple Output Regression with Latent Noise},
  journal      = {J. Mach. Learn. Res.},
  volume       = {17},
  pages        = {122:1--122:35},
  year         = {2016},
  url          = {http://jmlr.org/papers/v17/14-436.html},
  timestamp    = {Wed, 10 Jul 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jmlr/GillbergMPKSAHJ16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/PirinenLZCDDMR15,
  author       = {Matti Pirinen and
                  Tuuli Lappalainen and
                  Noah A. Zaitlen and
                  Emmanouil T. Dermitzakis and
                  Peter Donnelly and
                  Mark I. McCarthy and
                  Manuel A. Rivas},
  title        = {Assessing allele-specific expression across multiple tissues from
                  RNA-seq read data},
  journal      = {Bioinform.},
  volume       = {31},
  number       = {15},
  pages        = {2497--2504},
  year         = {2015},
  url          = {https://doi.org/10.1093/bioinformatics/btv074},
  doi          = {10.1093/BIOINFORMATICS/BTV074},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PirinenLZCDDMR15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/MarttinenPSGKSKSOKKLARSJRK14,
  author       = {Pekka Marttinen and
                  Matti Pirinen and
                  Antti{-}Pekka Sarin and
                  Jussi Gillberg and
                  Johannes Kettunen and
                  Ida Surakka and
                  Antti J. Kangas and
                  Pasi Soininen and
                  Paul F. O'Reilly and
                  Marika Kaakinen and
                  Mika K{\"{a}}h{\"{o}}nen and
                  Terho Lehtim{\"{a}}ki and
                  Mika Ala{-}Korpela and
                  Olli T. Raitakari and
                  Veikko Salomaa and
                  Marjo{-}Riitta J{\"{a}}rvelin and
                  Samuli Ripatti and
                  Samuel Kaski},
  title        = {Assessing multivariate gene-metabolome associations with rare variants
                  using Bayesian reduced rank regression},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {14},
  pages        = {2026--2034},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btu140},
  doi          = {10.1093/BIOINFORMATICS/BTU140},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MarttinenPSGKSKSOKKLARSJRK14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/RivasPNGMLKMD13,
  author       = {Manuel A. Rivas and
                  Matti Pirinen and
                  Matthew J. Neville and
                  Kyle J. Gaulton and
                  Loukas Moutsianas and
                  Cecilia M. Lindgren and
                  Fredrik Karpe and
                  Mark I. McCarthy and
                  Peter Donnelly},
  title        = {Assessing association between protein truncating variants and quantitative
                  traits},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {19},
  pages        = {2419--2426},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt409},
  doi          = {10.1093/BIOINFORMATICS/BTT409},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RivasPNGMLKMD13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/corr/GillbergMPKSJAK13,
  author       = {Jussi Gillberg and
                  Pekka Marttinen and
                  Matti Pirinen and
                  Antti J. Kangas and
                  Pasi Soininen and
                  Marjo{-}Riitta J{\"{a}}rvelin and
                  Mika Ala{-}Korpela and
                  Samuel Kaski},
  title        = {Bayesian Information Sharing Between Noise And Regression Models Improves
                  Prediction of Weak Effects},
  journal      = {CoRR},
  volume       = {abs/1310.4362},
  year         = {2013},
  url          = {http://arxiv.org/abs/1310.4362},
  eprinttype    = {arXiv},
  eprint       = {1310.4362},
  timestamp    = {Sat, 23 Jan 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/GillbergMPKSJAK13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tcbb/GasbarraKPS11,
  author       = {Dario Gasbarra and
                  Sangita Kulathinal and
                  Matti Pirinen and
                  Mikko J. Sillanp{\"{a}}{\"{a}}},
  title        = {Estimating Haplotype Frequencies by Combining Data from Large {DNA}
                  Pools with Database Information},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {8},
  number       = {1},
  pages        = {36--44},
  year         = {2011},
  url          = {https://doi.org/10.1109/TCBB.2009.71},
  doi          = {10.1109/TCBB.2009.71},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/GasbarraKPS11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/Pirinen09,
  author       = {Matti Pirinen},
  title        = {Estimating population haplotype frequencies from pooled {SNP} data
                  using incomplete database information},
  journal      = {Bioinform.},
  volume       = {25},
  number       = {24},
  pages        = {3296--3302},
  year         = {2009},
  url          = {https://doi.org/10.1093/bioinformatics/btp584},
  doi          = {10.1093/BIOINFORMATICS/BTP584},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/Pirinen09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/GasbarraPSA07,
  author       = {Dario Gasbarra and
                  Matti Pirinen and
                  Mikko J. Sillanp{\"{a}}{\"{a}} and
                  Elja Arjas},
  title        = {Estimating genealogies from linked marker data: a Bayesian approach},
  journal      = {{BMC} Bioinform.},
  volume       = {8},
  year         = {2007},
  url          = {https://doi.org/10.1186/1471-2105-8-411},
  doi          = {10.1186/1471-2105-8-411},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/GasbarraPSA07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/tcbb/PirinenG06,
  author       = {Matti Pirinen and
                  Dario Gasbarra},
  title        = {Finding Consistent Gene Transmission Patterns on Large and Complex
                  Pedigrees},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {3},
  number       = {3},
  pages        = {252--262},
  year         = {2006},
  url          = {https://doi.org/10.1109/TCBB.2006.36},
  doi          = {10.1109/TCBB.2006.36},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/PirinenG06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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