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ORCIDBibTeX records: Matthew E. Monroe
@article{DBLP:journals/bioinformatics/ClairRSMTAK19,
author = {Geremy Clair and
Sarah Reehl and
Kelly G. Stratton and
Matthew E. Monroe and
Malak M. Tfaily and
Charles Ansong and
Jennifer E. Kyle},
title = {Lipid Mini-On: mining and ontology tool for enrichment analysis of
lipidomic data},
journal = {Bioinform.},
volume = {35},
number = {21},
pages = {4507--4508},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz250},
doi = {10.1093/BIOINFORMATICS/BTZ250},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ClairRSMTAK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaCZIWRTPMSTBM17,
author = {Jian Ma and
Cameron P. Casey and
Xueyun Zheng and
Yehia M. Ibrahim and
Christopher S. Wilkins and
Ryan S. Renslow and
Dennis G. Thomas and
Samuel H. Payne and
Matthew E. Monroe and
Richard D. Smith and
Justin G. Teeguarden and
Erin S. Baker and
Thomas O. Metz},
title = {PIXiE: an algorithm for automated ion mobility arrival time extraction
and collision cross section calculation using global data association},
journal = {Bioinform.},
volume = {33},
number = {17},
pages = {2715--2722},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx305},
doi = {10.1093/BIOINFORMATICS/BTX305},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaCZIWRTPMSTBM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GibbonsCMTP15,
author = {Bryson C. Gibbons and
Matthew Chambers and
Matthew E. Monroe and
David L. Tabb and
Samuel H. Payne},
title = {Correcting systematic bias and instrument measurement drift with mzRefinery},
journal = {Bioinform.},
volume = {31},
number = {23},
pages = {3838--3840},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv437},
doi = {10.1093/BIOINFORMATICS/BTV437},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GibbonsCMTP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bigdata/KolkerOMHAAABCC13,
author = {Eugene Kolker and
Vural {\"{O}}zdemir and
Lennart Martens and
William Hancock and
Gordon A. Anderson and
Nathaniel Anderson and
Sukru Aynacioglu and
Ancha V. Baranova and
Shawn R. Campagna and
Rui Chen and
John Choiniere and
Stephen P. Dearth and
Wu{-}Chun Feng and
Lynnette Ferguson and
Geoffrey C. Fox and
Dmitrij Frishman and
Robert Grossman and
Allison P. Heath and
Roger Higdon and
Mara H. Hutz and
Imre Janko and
Lihua Jiang and
Sanjay Joshi and
Alexander E. Kel and
Joseph W. Kemnitz and
Isaac S. Kohane and
Natali Kolker and
Doron Lancet and
Elaine Lee and
Weizhong Li and
Andrey Lisitsa and
Adrian Llerena and
Courtney MacNealy{-}Koch and
Jean{-}Claude Marshall and
Paola Masuzzo and
Amanda May and
George Mias and
Matthew E. Monroe and
Elizabeth Montague and
Sean D. Mooney and
Alexey I. Nesvizhskii and
Santosh Noronha and
Gilbert S. Omenn and
Harsha Rajasimha and
Preveen Ramamoorthy and
Jerry Sheehan and
Larry Smarr and
Charles V. Smith and
Todd Smith and
Michael Snyder and
Srikanth Rapole and
Sanjeeva Srivastava and
Larissa Stanberry and
Elizabeth Stewart and
Stefano Toppo and
Peter Uetz and
Kenneth Verheggen and
Brynn H. Voy and
Louise Warnich and
Steven W. Wilhelm and
Gregory Yandl},
title = {Toward More Transparent and Reproducible Omics Studies Through a Common
Metadata Checklist and Data Publications},
journal = {Big Data},
volume = {1},
number = {4},
pages = {196--201},
year = {2013},
url = {https://doi.org/10.1089/big.2013.0039},
doi = {10.1089/BIG.2013.0039},
timestamp = {Tue, 20 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bigdata/KolkerOMHAAABCC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CrowellSBLMIPAS13,
author = {Kevin L. Crowell and
Gordon W. Slysz and
Erin S. Baker and
Brian L. LaMarche and
Matthew E. Monroe and
Yehia M. Ibrahim and
Samuel H. Payne and
Gordon A. Anderson and
Richard D. Smith},
title = {{LC-IMS-MS} Feature Finder: detecting multidimensional liquid chromatography,
ion mobility and mass spectrometry features in complex datasets},
journal = {Bioinform.},
volume = {29},
number = {21},
pages = {2804--2805},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt465},
doi = {10.1093/BIOINFORMATICS/BTT465},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CrowellSBLMIPAS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LaMarcheCJPSPSKMCMAS13,
author = {Brian L. LaMarche and
Kevin L. Crowell and
Navdeep Jaitly and
Vladislav A. Petyuk and
Anuj R. Shah and
Ashoka D. Polpitiya and
John D. Sandoval and
Gary R. Kiebel and
Matthew E. Monroe and
Stephen J. Callister and
Thomas O. Metz and
Gordon A. Anderson and
Richard D. Smith},
title = {MultiAlign: a multiple {LC-MS} analysis tool for targeted omics analysis},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {49},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-49},
doi = {10.1186/1471-2105-14-49},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LaMarcheCJPSPSKMCMAS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/WangDCHCLOPMCRT13,
author = {Dong Wang and
Surendra Dasari and
Matthew Chambers and
Jerry D. Holman and
Kan Chen and
Daniel C. Liebler and
Daniel J. Orton and
Samuel O. Purvine and
Matthew E. Monroe and
Chang Y. Chung and
Kristie L. Rose and
David L. Tabb},
title = {Basophile: Accurate Fragment Charge State Prediction Improves Peptide
Identification Rates},
journal = {Genom. Proteom. Bioinform.},
volume = {11},
number = {2},
pages = {86--95},
year = {2013},
url = {https://doi.org/10.1016/j.gpb.2012.11.004},
doi = {10.1016/J.GPB.2012.11.004},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/WangDCHCLOPMCRT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/AryalSKGMMKSPJ11,
author = {Uma K. Aryal and
Jana St{\"{o}}ckel and
Ravi K. Krovvidi and
Marina A. Gritsenko and
Matthew E. Monroe and
Ronald J. Moore and
David W. Koppenaal and
Richard D. Smith and
Himadri B. Pakrasi and
Jon M. Jacobs},
title = {Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece
{ATCC51142} across light-dark diurnal cycles},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {194},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-194},
doi = {10.1186/1752-0509-5-194},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/AryalSKGMMKSPJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ac/ShahABCCCGGHJJKMMMOPSVWa10,
author = {Anuj R. Shah and
Joshua N. Adkins and
Douglas J. Baxter and
William R. Cannon and
Daniel G. Chavarr{\'{\i}}a{-}Miranda and
Sutanay Choudhury and
Ian Gorton and
Deborah K. Gracio and
Todd D. Halter and
Navdeep Jaitly and
John R. Johnson and
Richard T. Kouzes and
Matthew C. Macduff and
Andr{\`{e}}s M{\'{a}}rquez and
Matthew E. Monroe and
Christopher S. Oehmen and
William A. Pike and
Chad Scherrer and
Oreste Villa and
Bobbie{-}Jo M. Webb{-}Robertson and
Paul D. Whitney and
Nino Zuljevic},
title = {Applications in Data-Intensive Computing},
journal = {Adv. Comput.},
volume = {79},
pages = {1--70},
year = {2010},
url = {https://doi.org/10.1016/S0065-2458(10)79001-X},
doi = {10.1016/S0065-2458(10)79001-X},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ac/ShahABCCCGGHJJKMMMOPSVWa10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShahABSMIKMZBAS10,
author = {Anuj R. Shah and
Khushbu Agarwal and
Erin S. Baker and
Mudita Singhal and
Anoop M. Mayampurath and
Yehia M. Ibrahim and
Lars J. Kangas and
Matthew E. Monroe and
Rui Zhao and
Mikhail E. Belov and
Gordon A. Anderson and
Richard D. Smith},
title = {Machine learning based prediction for peptide drift times in ion mobility
spectrometry},
journal = {Bioinform.},
volume = {26},
number = {13},
pages = {1601--1607},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq245},
doi = {10.1093/BIOINFORMATICS/BTQ245},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShahABSMIKMZBAS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/ShahJZMLPABASG09,
author = {Anuj R. Shah and
Navdeep Jaitly and
Nino Zuljevic and
Matthew E. Monroe and
Andrei Liyu and
Ashoka D. Polpitiya and
Joshua N. Adkins and
Mikhail E. Belov and
Gordon A. Anderson and
Richard D. Smith and
Ian Gorton},
title = {An Architecture for Real Time Data Acquisition and Online Signal Processing
for High Throughput Tandem Mass Spectrometry},
booktitle = {Fifth International Conference on e-Science, e-Science 2009, 9-11
December 2009, Oxford, {UK}},
pages = {88--93},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/e-Science.2009.21},
doi = {10.1109/E-SCIENCE.2009.21},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eScience/ShahJZMLPABASG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MayampurathJPMAAS08,
author = {Anoop M. Mayampurath and
Navdeep Jaitly and
Samuel O. Purvine and
Matthew E. Monroe and
Kenneth J. Auberry and
Joshua N. Adkins and
Richard D. Smith},
title = {DeconMSn: a software tool for accurate parent ion monoisotopic mass
determination for tandem mass spectra},
journal = {Bioinform.},
volume = {24},
number = {7},
pages = {1021--1023},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn063},
doi = {10.1093/BIOINFORMATICS/BTN063},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MayampurathJPMAAS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/MonroeSDAS08,
author = {Matthew E. Monroe and
Jason L. Shaw and
Don Simone Daly and
Joshua N. Adkins and
Richard D. Smith},
title = {{MASIC:} {A} software program for fast quantitation and flexible visualization
of chromatographic profiles from detected {LC-MS(/MS)} features},
journal = {Comput. Biol. Chem.},
volume = {32},
number = {3},
pages = {215--217},
year = {2008},
url = {https://doi.org/10.1016/j.compbiolchem.2008.02.006},
doi = {10.1016/J.COMPBIOLCHEM.2008.02.006},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/candc/MonroeSDAS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MonroeTJSAS07,
author = {Matthew E. Monroe and
Nikola Tolic and
Navdeep Jaitly and
Jason L. Shaw and
Joshua N. Adkins and
Richard D. Smith},
title = {{VIPER:} an advanced software package to support high-throughput {LC-MS}
peptide identification},
journal = {Bioinform.},
volume = {23},
number = {15},
pages = {2021--2023},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm281},
doi = {10.1093/BIOINFORMATICS/BTM281},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MonroeTJSAS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/metmbs/AndersonMD04,
author = {Kevin K. Anderson and
Matthew E. Monroe and
Don Simone Daly},
editor = {Faramarz Valafar and
Homayoun Valafar},
title = {Estimating Probabilities of Peptide Assignments to {LC-FTICR-MS} Observations},
booktitle = {Proceedings of the International Conference on Mathematics and Engineering
Techniques in Medicine and Biological Scienes, {METMBS} '04, June
21-24, 2004, Las Vegas, Nevada, {USA}},
pages = {151--156},
publisher = {{CSREA} Press},
year = {2004},
timestamp = {Thu, 23 Jun 2016 15:53:27 +0200},
biburl = {https://dblp.org/rec/conf/metmbs/AndersonMD04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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