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ORCIDBibTeX records: Yukiko Matsuoka
@article{DBLP:journals/nar/HsinMAKWKK16,
author = {Kun{-}Yi Hsin and
Yukiko Matsuoka and
Yoshiyuki Asai and
Kyota Kamiyoshi and
Tokiko Watanabe and
Yoshihiro Kawaoka and
Hiroaki Kitano},
title = {systemsDock: a web server for network pharmacology-based prediction
and analysis},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Webserver-Issue},
pages = {W507--W513},
year = {2016},
url = {https://doi.org/10.1093/nar/gkw335},
doi = {10.1093/NAR/GKW335},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HsinMAKWKK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MatsuokaMKENHGSLWWFKK13,
author = {Yukiko Matsuoka and
Hiromi Matsumae and
Manami Katoh and
Amie J. Eisfeld and
Gabriele Neumann and
Takeshi Hase and
Samik Ghosh and
Jason E. Shoemaker and
Tiago J. S. Lopes and
Tokiko Watanabe and
Shinji Watanabe and
Satoshi Fukuyama and
Hiroaki Kitano and
Yoshihiro Kawaoka},
title = {A comprehensive map of the influenza {A} virus replication cycle},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {97},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-97},
doi = {10.1186/1752-0509-7-97},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MatsuokaMKENHGSLWWFKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SchaeferLMSMFLENPKKA13,
author = {Martin H. Schaefer and
Tiago J. S. Lopes and
Nancy Mah and
Jason E. Shoemaker and
Yukiko Matsuoka and
Jean{-}Fred Fontaine and
Caroline Louis{-}Jeune and
Amie J. Eisfeld and
Gabriele Neumann and
Carol Perez{-}Iratxeta and
Yoshihiro Kawaoka and
Hiroaki Kitano and
Miguel A. Andrade{-}Navarro},
title = {Adding Protein Context to the Human Protein-Protein Interaction Network
to Reveal Meaningful Interactions},
journal = {PLoS Comput. Biol.},
volume = {9},
number = {1},
year = {2013},
url = {https://doi.org/10.1371/journal.pcbi.1002860},
doi = {10.1371/JOURNAL.PCBI.1002860},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/SchaeferLMSMFLENPKKA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/AsaiAOOOHGMKK13,
author = {Yoshiyuki Asai and
Takeshi Abe and
Hideki Oka and
Masao Okita and
Tomohiro Okuyama and
Kenichi Hagihara and
Samik Ghosh and
Yukiko Matsuoka and
Yoshihisa Kurachi and
Hiroaki Kitano},
title = {A versatile platform for multilevel modeling of physiological systems:
Template/instance framework for large-scale modeling and simulation},
booktitle = {35th Annual International Conference of the {IEEE} Engineering in
Medicine and Biology Society, {EMBC} 2013, Osaka, Japan, July 3-7,
2013},
pages = {5529--5532},
publisher = {{IEEE}},
year = {2013},
url = {https://doi.org/10.1109/EMBC.2013.6610802},
doi = {10.1109/EMBC.2013.6610802},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/embc/AsaiAOOOHGMKK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/IerselVCBBLDSDMFAMMKNS12,
author = {Martijn P. van Iersel and
Alice Vill{\'{e}}ger and
Tobias Czauderna and
Sarah E. Boyd and
Frank T. Bergmann and
Augustin Luna and
Emek Demir and
Anatoly A. Sorokin and
Ugur Dogrus{\"{o}}z and
Yukiko Matsuoka and
Akira Funahashi and
Mirit I. Aladjem and
Huaiyu Mi and
Stuart L. Moodie and
Hiroaki Kitano and
Nicolas Le Nov{\`{e}}re and
Falk Schreiber},
title = {Software support for {SBGN} maps: {SBGN-ML} and LibSBGN},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {2016--2021},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts270},
doi = {10.1093/BIOINFORMATICS/BTS270},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/IerselVCBBLDSDMFAMMKNS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MizunoIOKMGMMKT12,
author = {Satoshi Mizuno and
Risa Iijima and
Soichi Ogishima and
Masataka Kikuchi and
Yukiko Matsuoka and
Samik Ghosh and
Tadashi Miyamoto and
Akinori Miyashita and
Ryozo Kuwano and
Hiroshi Tanaka},
title = {AlzPathway: a comprehensive map of signaling pathways of Alzheimer's
disease},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {52},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-52},
doi = {10.1186/1752-0509-6-52},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MizunoIOKMGMMKT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/ShoemakerFEMWWMKK12,
author = {Jason E. Shoemaker and
Satoshi Fukuyama and
Amie J. Eisfeld and
Yukiko Muramoto and
Shinji Watanabe and
Tokiko Watanabe and
Yukiko Matsuoka and
Hiroaki Kitano and
Yoshihiro Kawaoka},
title = {Integrated network analysis reveals a novel role for the cell cycle
in 2009 pandemic influenza virus-induced inflammation in macaque lungs},
journal = {{BMC} Syst. Biol.},
volume = {6},
pages = {117},
year = {2012},
url = {https://doi.org/10.1186/1752-0509-6-117},
doi = {10.1186/1752-0509-6-117},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/ShoemakerFEMWWMKK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LopesSSMFNAKK11,
author = {Tiago J. S. Lopes and
Martin H. Schaefer and
Jason E. Shoemaker and
Yukiko Matsuoka and
Jean{-}Fred Fontaine and
Gabriele Neumann and
Miguel A. Andrade{-}Navarro and
Yoshihiro Kawaoka and
Hiroaki Kitano},
title = {Tissue-specific subnetworks and characteristics of publicly available
human protein interaction databases},
journal = {Bioinform.},
volume = {27},
number = {17},
pages = {2414--2421},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr414},
doi = {10.1093/BIOINFORMATICS/BTR414},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LopesSSMFNAKK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MiMDMFKT11,
author = {Huaiyu Mi and
Anushya Muruganujan and
Emek Demir and
Yukiko Matsuoka and
Akira Funahashi and
Hiroaki Kitano and
Paul D. Thomas},
title = {BioPAX support in CellDesigner},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3437--3438},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr586},
doi = {10.1093/BIOINFORMATICS/BTR586},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MiMDMFKT11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MatsuokaGKK10,
author = {Yukiko Matsuoka and
Samik Ghosh and
Norihiro Kikuchi and
Hiroaki Kitano},
title = {Payao: a community platform for {SBML} pathway model curation},
journal = {Bioinform.},
volume = {26},
number = {10},
pages = {1381--1383},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq143},
doi = {10.1093/BIOINFORMATICS/BTQ143},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MatsuokaGKK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KemperMMTKAT10,
author = {Brian Kemper and
Takuya Matsuzaki and
Yukiko Matsuoka and
Yoshimasa Tsuruoka and
Hiroaki Kitano and
Sophia Ananiadou and
Jun'ichi Tsujii},
title = {PathText: a text mining integrator for biological pathway visualizations},
journal = {Bioinform.},
volume = {26},
number = {12},
pages = {374--381},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq221},
doi = {10.1093/BIOINFORMATICS/BTQ221},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KemperMMTKAT10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pieee/FunahashiMJMKK08,
author = {Akira Funahashi and
Yukiko Matsuoka and
Akiya Jouraku and
Mineo Morohashi and
Norihiro Kikuchi and
Hiroaki Kitano},
title = {CellDesigner 3.5: {A} Versatile Modeling Tool for Biochemical Networks},
journal = {Proc. {IEEE}},
volume = {96},
number = {8},
pages = {1254--1265},
year = {2008},
url = {https://doi.org/10.1109/JPROC.2008.925458},
doi = {10.1109/JPROC.2008.925458},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pieee/FunahashiMJMKK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/SaetreKOOMKKTAT08,
author = {Rune S{\ae}tre and
Brian Kemper and
Kanae Oda and
Naoaki Okazaki and
Yukiko Matsuoka and
Norihiro Kikuchi and
Hiroaki Kitano and
Yoshimasa Tsuruoka and
Sophia Ananiadou and
Jun'ichi Tsujii},
title = {Connecting Text Mining and Pathways using the PathText Resource},
booktitle = {Proceedings of the International Conference on Language Resources
and Evaluation, {LREC} 2008, 26 May - 1 June 2008, Marrakech, Morocco},
publisher = {European Language Resources Association},
year = {2008},
url = {http://www.lrec-conf.org/proceedings/lrec2008/summaries/442.html},
timestamp = {Mon, 19 Aug 2019 15:22:28 +0200},
biburl = {https://dblp.org/rec/conf/lrec/SaetreKOOMKKTAT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isb/FunahashiJMK07,
author = {Akira Funahashi and
Akiya Jouraku and
Yukiko Matsuoka and
Hiroaki Kitano},
title = {Integration of CellDesigner and {SABIO-RK}},
journal = {Silico Biol.},
volume = {7},
number = {6},
pages = {81--90},
year = {2007},
url = {http://content.iospress.com/articles/in-silico-biology/isb00309},
timestamp = {Thu, 20 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/isb/FunahashiJMK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsc/FunahashiMJKK06,
author = {Akira Funahashi and
Yukiko Matsuoka and
Akiya Jouraku and
Hiroaki Kitano and
Norihiro Kikuchi},
editor = {L. Felipe Perrone and
Barry Lawson and
Jason Liu and
Frederick P. Wieland},
title = {CellDesigner: a modeling tool for biochemical networks},
booktitle = {Proceedings of the Winter Simulation Conference {WSC} 2006, Monterey,
California, USA, December 3-6, 2006},
pages = {1707--1712},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/WSC.2006.322946},
doi = {10.1109/WSC.2006.322946},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wsc/FunahashiMJKK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhr/KitanoYMEMKK04,
author = {Hiroaki Kitano and
Fuminori Yamasaki and
Tatsuya Matsui and
Ken Endo and
Yukiko Matsuoka and
Hiroshi Kaminaga and
Yuichiro Kato},
title = {The Story of Pino},
journal = {Int. J. Humanoid Robotics},
volume = {1},
number = {3},
pages = {449--463},
year = {2004},
url = {https://doi.org/10.1142/S0219843604000277},
doi = {10.1142/S0219843604000277},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijhr/KitanoYMEMKK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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