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ORCIDBibTeX records: Olivier C. Martin
@article{DBLP:journals/bib/SilSKMS24,
author = {Priyotosh Sil and
Ajay Subbaroyan and
Saumitra Kulkarni and
Olivier C. Martin and
Areejit Samal},
title = {Biologically meaningful regulatory logic enhances the convergence
rate in Boolean networks and bushiness of their state transition graph},
journal = {Briefings Bioinform.},
volume = {25},
number = {3},
year = {2024},
url = {https://doi.org/10.1093/bib/bbae150},
doi = {10.1093/BIB/BBAE150},
timestamp = {Sat, 04 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/SilSKMS24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SubbaroyanSMS23,
author = {Ajay Subbaroyan and
Priyotosh Sil and
Olivier C. Martin and
Areejit Samal},
title = {Leveraging developmental landscapes for model selection in Boolean
gene regulatory networks},
journal = {Briefings Bioinform.},
volume = {24},
number = {3},
year = {2023},
url = {https://doi.org/10.1093/bib/bbad160},
doi = {10.1093/BIB/BBAD160},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/SubbaroyanSMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VidalGRGLCJTMF22,
author = {Adrien Vidal and
Franck Gauthier and
Willy Rodrigez and
Nad{\`{e}}ge Guiglielmoni and
Damien Leroux and
Nicolas Chevrolier and
Sylvain Jasson and
Elise Tourrette and
Olivier C. Martin and
Matthieu Falque},
title = {SeSAM: software for automatic construction of order-robust linkage
maps},
journal = {{BMC} Bioinform.},
volume = {23},
number = {1},
pages = {499},
year = {2022},
url = {https://doi.org/10.1186/s12859-022-05045-7},
doi = {10.1186/S12859-022-05045-7},
timestamp = {Tue, 31 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VidalGRGLCJTMF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/MoriHMMM16,
author = {Matteo Mori and
Terence Hwa and
Olivier C. Martin and
Andrea De Martino and
Enzo Marinari},
title = {Constrained Allocation Flux Balance Analysis},
journal = {PLoS Comput. Biol.},
volume = {12},
number = {6},
year = {2016},
url = {https://doi.org/10.1371/journal.pcbi.1004913},
doi = {10.1371/JOURNAL.PCBI.1004913},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/MoriHMMM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/BarveHMW14,
author = {Aditya Barve and
Sayed{-}Rzgar Hosseini and
Olivier C. Martin and
Andreas Wagner},
title = {Historical contingency and the gradual evolution of metabolic properties
in central carbon and genome-scale metabolisms},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {48},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-48},
doi = {10.1186/1752-0509-8-48},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/BarveHMW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GauthierMF11,
author = {Franck Gauthier and
Olivier C. Martin and
Matthieu Falque},
title = {{CODA} (CrossOver Distribution Analyzer): quantitative characterization
of crossover position patterns along chromosomes},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {27},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-27},
doi = {10.1186/1471-2105-12-27},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GauthierMF11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SamalWM11,
author = {Areejit Samal and
Andreas Wagner and
Olivier C. Martin},
title = {Environmental versatility promotes modularity in genome-scale metabolic
networks},
journal = {{BMC} Syst. Biol.},
volume = {5},
pages = {135},
year = {2011},
url = {https://doi.org/10.1186/1752-0509-5-135},
doi = {10.1186/1752-0509-5-135},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SamalWM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/BourguignonSKJM10,
author = {Pierre{-}Yves Bourguignon and
Areejit Samal and
Fran{\c{c}}ois K{\'{e}}p{\`{e}}s and
J{\"{u}}rgen Jost and
Olivier C. Martin},
title = {Challenges in experimental data integration within genome-scale metabolic
models},
journal = {Algorithms Mol. Biol.},
volume = {5},
pages = {20},
year = {2010},
url = {https://doi.org/10.1186/1748-7188-5-20},
doi = {10.1186/1748-7188-5-20},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/BourguignonSKJM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/SamalRJMW10,
author = {Areejit Samal and
Jo{\~{a}}o F. Matias Rodrigues and
J{\"{u}}rgen Jost and
Olivier C. Martin and
Andreas Wagner},
title = {Genotype networks in metabolic reaction spaces},
journal = {{BMC} Syst. Biol.},
volume = {4},
pages = {30},
year = {2010},
url = {https://doi.org/10.1186/1752-0509-4-30},
doi = {10.1186/1752-0509-4-30},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/SamalRJMW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/SulcWM10,
author = {Petr Sulc and
Andreas Wagner and
Olivier C. Martin},
title = {Quantifying Slow Evolutionary Dynamics in {RNA} Fitness Landscapes},
journal = {J. Bioinform. Comput. Biol.},
volume = {8},
number = {6},
pages = {1027--1040},
year = {2010},
url = {https://doi.org/10.1142/S0219720010005075},
doi = {10.1142/S0219720010005075},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/SulcWM10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/JunierMK10,
author = {Ivan Junier and
Olivier C. Martin and
Fran{\c{c}}ois K{\'{e}}p{\`{e}}s},
title = {Spatial and Topological Organization of {DNA} Chains Induced by Gene
Co-localization},
journal = {PLoS Comput. Biol.},
volume = {6},
number = {2},
year = {2010},
url = {https://doi.org/10.1371/journal.pcbi.1000678},
doi = {10.1371/JOURNAL.PCBI.1000678},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/JunierMK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VienneGM09,
author = {Damien M. de Vienne and
Tatiana Giraud and
Olivier C. Martin},
title = {In response to comment on 'A congruence index for testing topological
similarity between trees'},
journal = {Bioinform.},
volume = {25},
number = {1},
pages = {150--151},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn535},
doi = {10.1093/BIOINFORMATICS/BTN535},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VienneGM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JorgMW08,
author = {Thomas J{\"{o}}rg and
Olivier C. Martin and
Andreas Wagner},
title = {Neutral network sizes of biological {RNA} molecules can be computed
and are not atypically small},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-464},
doi = {10.1186/1471-2105-9-464},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/JorgMW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VienneGM07,
author = {Damien M. de Vienne and
Tatiana Giraud and
Olivier C. Martin},
title = {A congruence index for testing topological similarity between trees},
journal = {Bioinform.},
volume = {23},
number = {23},
pages = {3119--3124},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm500},
doi = {10.1093/BIOINFORMATICS/BTM500},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/VienneGM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biosystems/SumedhaMW07,
author = {Sumedha and
Olivier C. Martin and
Andreas Wagner},
title = {New structural variation in evolutionary searches of {RNA} neutral
networks},
journal = {Biosyst.},
volume = {90},
number = {2},
pages = {475--485},
year = {2007},
url = {https://doi.org/10.1016/j.biosystems.2006.11.007},
doi = {10.1016/J.BIOSYSTEMS.2006.11.007},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biosystems/SumedhaMW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/CilibertiMW07,
author = {Stefano Ciliberti and
Olivier C. Martin and
Andreas Wagner},
title = {Robustness Can Evolve Gradually in Complex Regulatory Gene Networks
with Varying Topology},
journal = {PLoS Comput. Biol.},
volume = {3},
number = {2},
year = {2007},
url = {https://doi.org/10.1371/journal.pcbi.0030015},
doi = {10.1371/JOURNAL.PCBI.0030015},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/CilibertiMW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/03/LourencoMS03,
author = {Helena R. Louren{\c{c}}o and
Olivier C. Martin and
Thomas St{\"{u}}tzle},
editor = {Fred W. Glover and
Gary A. Kochenberger},
title = {Iterated Local Search},
booktitle = {Handbook of Metaheuristics},
series = {International Series in Operations Research {\&} Management Science},
volume = {57},
pages = {320--353},
publisher = {Kluwer / Springer},
year = {2003},
url = {https://doi.org/10.1007/0-306-48056-5\_11},
doi = {10.1007/0-306-48056-5\_11},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/sp/03/LourencoMS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/MartinMZ01,
author = {Olivier C. Martin and
R{\'{e}}mi Monasson and
Riccardo Zecchina},
title = {Statistical mechanics methods and phase transitions in optimization
problems},
journal = {Theor. Comput. Sci.},
volume = {265},
number = {1-2},
pages = {3--67},
year = {2001},
url = {https://doi.org/10.1016/S0304-3975(01)00149-9},
doi = {10.1016/S0304-3975(01)00149-9},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tcs/MartinMZ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/anor/MartinO96,
author = {Olivier C. Martin and
Steve W. Otto},
title = {Combining simulated annealing with local search heuristics},
journal = {Ann. Oper. Res.},
volume = {63},
number = {1},
pages = {57--75},
year = {1996},
url = {https://doi.org/10.1007/BF02601639},
doi = {10.1007/BF02601639},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/anor/MartinO96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/MartinO95,
author = {Olivier C. Martin and
Steve W. Otto},
title = {Partitioning of unstructured meshes for load balancing},
journal = {Concurr. Pract. Exp.},
volume = {7},
number = {4},
pages = {303--314},
year = {1995},
url = {https://doi.org/10.1002/cpe.4330070404},
doi = {10.1002/CPE.4330070404},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/concurrency/MartinO95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/orl/MartinOF92,
author = {Olivier C. Martin and
Steve W. Otto and
Edward W. Felten},
title = {Large-step markov chains for the {TSP} incorporating local search
heuristics},
journal = {Oper. Res. Lett.},
volume = {11},
number = {4},
pages = {219--224},
year = {1992},
url = {https://doi.org/10.1016/0167-6377(92)90028-2},
doi = {10.1016/0167-6377(92)90028-2},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/orl/MartinOF92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/compsys/MartinOF91,
author = {Olivier C. Martin and
Steve W. Otto and
Edward W. Felten},
title = {Large-Step Markov Chains for the Traveling Salesman Problem},
journal = {Complex Syst.},
volume = {5},
number = {3},
year = {1991},
url = {http://www.complex-systems.com/abstracts/v05\_i03\_a03.html},
timestamp = {Fri, 11 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/compsys/MartinOF91.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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