BibTeX records: Edward M. Marcotte

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@article{DBLP:journals/bmcbi/PalukuriPM23,
  author       = {Meghana V. Palukuri and
                  Ridhi S. Patil and
                  Edward M. Marcotte},
  title        = {Molecular complex detection in protein interaction networks through
                  reinforcement learning},
  journal      = {{BMC} Bioinform.},
  volume       = {24},
  number       = {1},
  pages        = {306},
  year         = {2023},
  url          = {https://doi.org/10.1186/s12859-023-05425-7},
  doi          = {10.1186/S12859-023-05425-7},
  timestamp    = {Fri, 18 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/PalukuriPM23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SmithSM23,
  author       = {Matthew Beauregard Smith and
                  Zack Booth Simpson and
                  Edward M. Marcotte},
  title        = {Amino acid sequence assignment from single molecule peptide sequencing
                  data using a two-stage classifier},
  journal      = {PLoS Comput. Biol.},
  volume       = {19},
  number       = {5},
  year         = {2023},
  url          = {https://doi.org/10.1371/journal.pcbi.1011157},
  doi          = {10.1371/JOURNAL.PCBI.1011157},
  timestamp    = {Sat, 14 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/SmithSM23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2309-08765,
  author       = {Clayton W. Kosonocky and
                  Claus O. Wilke and
                  Edward M. Marcotte and
                  Andrew D. Ellington},
  title        = {Mining Patents with Large Language Models Demonstrates Congruence
                  of Functional Labels and Chemical Structures},
  journal      = {CoRR},
  volume       = {abs/2309.08765},
  year         = {2023},
  url          = {https://doi.org/10.48550/arXiv.2309.08765},
  doi          = {10.48550/ARXIV.2309.08765},
  eprinttype    = {arXiv},
  eprint       = {2309.08765},
  timestamp    = {Tue, 26 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/abs-2309-08765.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KimBCYKMHL22,
  author       = {Chan Yeong Kim and
                  Seungbyn Baek and
                  Junha Cha and
                  Sunmo Yang and
                  Eiru Kim and
                  Edward M. Marcotte and
                  G. Traver Hart and
                  Insuk Lee},
  title        = {HumanNet v3: an improved database of human gene networks for disease
                  research},
  journal      = {Nucleic Acids Res.},
  volume       = {50},
  number       = {{D1}},
  pages        = {632--639},
  year         = {2022},
  url          = {https://doi.org/10.1093/nar/gkab1048},
  doi          = {10.1093/NAR/GKAB1048},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KimBCYKMHL22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/McCaffertyVMT20,
  author       = {Caitlyn L. McCafferty and
                  Eric J. Verbeke and
                  Edward M. Marcotte and
                  David W. Taylor},
  title        = {Structural Biology in the Multi-Omics Era},
  journal      = {J. Chem. Inf. Model.},
  volume       = {60},
  number       = {5},
  pages        = {2424--2429},
  year         = {2020},
  url          = {https://doi.org/10.1021/acs.jcim.9b01164},
  doi          = {10.1021/ACS.JCIM.9B01164},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/McCaffertyVMT20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HwangKYKHML19,
  author       = {Sohyun Hwang and
                  Chan Yeong Kim and
                  Sunmo Yang and
                  Eiru Kim and
                  G. Traver Hart and
                  Edward M. Marcotte and
                  Insuk Lee},
  title        = {HumanNet v2: human gene networks for disease research},
  journal      = {Nucleic Acids Res.},
  volume       = {47},
  number       = {Database-Issue},
  pages        = {D573--D580},
  year         = {2019},
  url          = {https://doi.org/10.1093/nar/gky1126},
  doi          = {10.1093/NAR/GKY1126},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HwangKYKHML19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LiebeskindAM19,
  author       = {Benjamin J. Liebeskind and
                  Richard W. Aldrich and
                  Edward M. Marcotte},
  title        = {Ancestral reconstruction of protein interaction networks},
  journal      = {PLoS Comput. Biol.},
  volume       = {15},
  number       = {10},
  year         = {2019},
  url          = {https://doi.org/10.1371/journal.pcbi.1007396},
  doi          = {10.1371/JOURNAL.PCBI.1007396},
  timestamp    = {Sat, 25 Dec 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/LiebeskindAM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ShimBYLHKSML17,
  author       = {Jung Eun Shim and
                  Changbae Bang and
                  Sunmo Yang and
                  Tak Lee and
                  Sohyun Hwang and
                  Chan Yeong Kim and
                  Ulf Martin Singh{-}Blom and
                  Edward M. Marcotte and
                  Insuk Lee},
  title        = {{GWAB:} a web server for the network-based boosting of human genome-wide
                  association data},
  journal      = {Nucleic Acids Res.},
  volume       = {45},
  number       = {Webserver-Issue},
  pages        = {W154--W161},
  year         = {2017},
  url          = {https://doi.org/10.1093/nar/gkx284},
  doi          = {10.1093/NAR/GKX284},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/ShimBYLHKSML17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/DrewMBM17,
  author       = {Kevin Drew and
                  Christian L. M{\"{u}}ller and
                  Richard Bonneau and
                  Edward M. Marcotte},
  title        = {Identifying direct contacts between protein complex subunits from
                  their conditional dependence in proteomics datasets},
  journal      = {PLoS Comput. Biol.},
  volume       = {13},
  number       = {10},
  year         = {2017},
  url          = {https://doi.org/10.1371/journal.pcbi.1005625},
  doi          = {10.1371/JOURNAL.PCBI.1005625},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/DrewMBM17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YoungPKMMWM16,
  author       = {Jonathan H. Young and
                  Michael Peyton and
                  Hyun Seok Kim and
                  Elizabeth McMillan and
                  John D. Minna and
                  Michael A. White and
                  Edward M. Marcotte},
  title        = {Computational discovery of pathway-level genetic vulnerabilities in
                  non-small-cell lung cancer},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {9},
  pages        = {1373--1379},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btw010},
  doi          = {10.1093/BIOINFORMATICS/BTW010},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/YoungPKMMWM16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KimHKSKYSSML16,
  author       = {Eiru Kim and
                  Sohyun Hwang and
                  Hyojin Kim and
                  Hongseok Shim and
                  Byunghee Kang and
                  Sunmo Yang and
                  Jae Ho Shim and
                  Seung Yeon Shin and
                  Edward M. Marcotte and
                  Insuk Lee},
  title        = {MouseNet v2: a database of gene networks for studying the laboratory
                  mouse and eight other model vertebrates},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Database-Issue},
  pages        = {848--854},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkv1155},
  doi          = {10.1093/NAR/GKV1155},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/KimHKSKYSSML16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SwaminathanBM15,
  author       = {Jagannath Swaminathan and
                  Alexander A. Boulgakov and
                  Edward M. Marcotte},
  title        = {A Theoretical Justification for Single Molecule Peptide Sequencing},
  journal      = {PLoS Comput. Biol.},
  volume       = {11},
  number       = {2},
  year         = {2015},
  url          = {https://doi.org/10.1371/journal.pcbi.1004080},
  doi          = {10.1371/JOURNAL.PCBI.1004080},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/SwaminathanBM15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/HouserBBCDMNPSS15,
  author       = {John R. Houser and
                  Craig Barnhart and
                  Daniel R. Boutz and
                  Sean M. Carroll and
                  Aurko Dasgupta and
                  Joshua K. Michener and
                  Brittany D. Needham and
                  Ophelia Papoulas and
                  Viswanadham Sridhara and
                  Dariya K. Sydykova and
                  Christopher J. Marx and
                  M. Stephen Trent and
                  Jeffrey E. Barrick and
                  Edward M. Marcotte and
                  Claus O. Wilke},
  title        = {Controlled Measurement and Comparative Analysis of Cellular Components
                  in \emph{E}. \emph{coli} Reveals Broad Regulatory Changes in Response
                  to Glucose Starvation},
  journal      = {PLoS Comput. Biol.},
  volume       = {11},
  number       = {8},
  year         = {2015},
  url          = {https://doi.org/10.1371/journal.pcbi.1004400},
  doi          = {10.1371/JOURNAL.PCBI.1004400},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ploscb/HouserBBCDMNPSS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HwangKYML14,
  author       = {Sohyun Hwang and
                  Eiru Kim and
                  Sunmo Yang and
                  Edward M. Marcotte and
                  Insuk Lee},
  title        = {{MORPHIN:} a web tool for human disease research by projecting model
                  organism biology onto a human integrated gene network},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Webserver-Issue},
  pages        = {147--153},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gku434},
  doi          = {10.1093/NAR/GKU434},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/HwangKYML14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WoodsSLMM13,
  author       = {John O. Woods and
                  Ulf Martin Singh{-}Blom and
                  Jon M. Laurent and
                  Kriston L. McGary and
                  Edward M. Marcotte},
  title        = {Prediction of gene-phenotype associations in humans, mice, and plants
                  using phenologs},
  journal      = {{BMC} Bioinform.},
  volume       = {14},
  pages        = {203},
  year         = {2013},
  url          = {https://doi.org/10.1186/1471-2105-14-203},
  doi          = {10.1186/1471-2105-14-203},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/WoodsSLMM13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/others/12/VogelM12,
  author       = {Christine Vogel and
                  Edward M. Marcotte},
  editor       = {Katrin Marcus},
  title        = {Label-Free Protein Quantitation Using Weighted Spectral Counting},
  booktitle    = {Quantitative Methods in Proteomics},
  series       = {Methods in Molecular Biology},
  volume       = {893},
  pages        = {321--341},
  publisher    = {Humana Press},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-1-61779-885-6\_20},
  doi          = {10.1007/978-1-61779-885-6\_20},
  timestamp    = {Wed, 16 Dec 2020 16:45:37 +0100},
  biburl       = {https://dblp.org/rec/books/others/12/VogelM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ParkM11,
  author       = {Yungki Park and
                  Edward M. Marcotte},
  title        = {Revisiting the negative example sampling problem for predicting protein-protein
                  interactions},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {21},
  pages        = {3024--3028},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr514},
  doi          = {10.1093/BIOINFORMATICS/BTR514},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ParkM11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamakrishnanVPWLPMMM09,
  author       = {Smriti R. Ramakrishnan and
                  Christine Vogel and
                  John T. Prince and
                  Rong Wang and
                  Zhihua Li and
                  Luiz O. F. Penalva and
                  Margaret Myers and
                  Edward M. Marcotte and
                  Daniel P. Miranker},
  title        = {Integrating shotgun proteomics and mRNA expression data to improve
                  protein identification},
  journal      = {Bioinform.},
  volume       = {25},
  number       = {11},
  pages        = {1397--1403},
  year         = {2009},
  url          = {https://doi.org/10.1093/bioinformatics/btp168},
  doi          = {10.1093/BIOINFORMATICS/BTP168},
  timestamp    = {Thu, 29 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RamakrishnanVPWLPMMM09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamakrishnanVKPMM09,
  author       = {Smriti R. Ramakrishnan and
                  Christine Vogel and
                  Taejoon Kwon and
                  Luiz O. F. Penalva and
                  Edward M. Marcotte and
                  Daniel P. Miranker},
  title        = {Mining gene functional networks to improve mass-spectrometry-based
                  protein identification},
  journal      = {Bioinform.},
  volume       = {25},
  number       = {22},
  pages        = {2955--2961},
  year         = {2009},
  url          = {https://doi.org/10.1093/bioinformatics/btp461},
  doi          = {10.1093/BIOINFORMATICS/BTP461},
  timestamp    = {Thu, 29 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RamakrishnanVKPMM09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PrinceM08,
  author       = {John T. Prince and
                  Edward M. Marcotte},
  title        = {mspire: mass spectrometry proteomics in Ruby},
  journal      = {Bioinform.},
  volume       = {24},
  number       = {23},
  pages        = {2796--2797},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btn513},
  doi          = {10.1093/BIOINFORMATICS/BTN513},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PrinceM08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BraistedKVMRWHFSFPP08,
  author       = {John C. Braisted and
                  Srilatha Kuntumalla and
                  Christine Vogel and
                  Edward M. Marcotte and
                  Alan R. Rodrigues and
                  Rong Wang and
                  Shih{-}Ting Huang and
                  Erik S. Ferlanti and
                  Alexander I. Saeed and
                  Robert D. Fleischmann and
                  Scott N. Peterson and
                  Rembert Pieper},
  title        = {The {APEX} Quantitative Proteomics Tool: Generating protein quantitation
                  estimates from {LC-MS/MS} proteomics results},
  journal      = {{BMC} Bioinform.},
  volume       = {9},
  year         = {2008},
  url          = {https://doi.org/10.1186/1471-2105-9-529},
  doi          = {10.1186/1471-2105-9-529},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/BraistedKVMRWHFSFPP08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KimM08,
  author       = {Wan Kyu Kim and
                  Edward M. Marcotte},
  title        = {Age-Dependent Evolution of the Yeast Protein Interaction Network Suggests
                  a Limited Role of Gene Duplication and Divergence},
  journal      = {PLoS Comput. Biol.},
  volume       = {4},
  number       = {11},
  year         = {2008},
  url          = {https://doi.org/10.1371/journal.pcbi.1000232},
  doi          = {10.1371/JOURNAL.PCBI.1000232},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/KimM08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HartLM07,
  author       = {G. Traver Hart and
                  Insuk Lee and
                  Edward M. Marcotte},
  title        = {A high-accuracy consensus map of yeast protein complexes reveals modular
                  nature of gene essentiality},
  journal      = {{BMC} Bioinform.},
  volume       = {8},
  year         = {2007},
  url          = {https://doi.org/10.1186/1471-2105-8-236},
  doi          = {10.1186/1471-2105-8-236},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/HartLM07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RamakrishnanMNPWXMM06,
  author       = {Smriti R. Ramakrishnan and
                  Rui Mao and
                  Aleksey A. Nakorchevskiy and
                  John T. Prince and
                  Willard S. Willard and
                  Weijia Xu and
                  Edward M. Marcotte and
                  Daniel P. Miranker},
  title        = {A fast coarse filtering method for peptide identification by mass
                  spectrometry},
  journal      = {Bioinform.},
  volume       = {22},
  number       = {12},
  pages        = {1524--1531},
  year         = {2006},
  url          = {https://doi.org/10.1093/bioinformatics/btl118},
  doi          = {10.1093/BIOINFORMATICS/BTL118},
  timestamp    = {Thu, 04 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RamakrishnanMNPWXMM06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/BunescuMRM06,
  author       = {Razvan C. Bunescu and
                  Raymond J. Mooney and
                  Arun K. Ramani and
                  Edward M. Marcotte},
  editor       = {Karin Verspoor and
                  Kevin Bretonnel Cohen and
                  Ben Goertzel and
                  Inderjeet Mani},
  title        = {Integrating Co-occurrence Statistics with Information Extraction for
                  Robust Retrieval of Protein Interactions from Medline},
  booktitle    = {Proceedings of the Workshop on Linking Natural Language and Biology,
                  BioNLP@NAACL-HLT 2006, New York, NY, USA, June 8, 2006},
  pages        = {49--56},
  publisher    = {Association for Computational Linguistics},
  year         = {2006},
  url          = {https://aclanthology.org/W06-3307/},
  timestamp    = {Thu, 17 Feb 2022 16:43:16 +0100},
  biburl       = {https://dblp.org/rec/conf/bionlp/BunescuMRM06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/BunescuGKMMRW05,
  author       = {Razvan C. Bunescu and
                  Ruifang Ge and
                  Rohit J. Kate and
                  Edward M. Marcotte and
                  Raymond J. Mooney and
                  Arun K. Ramani and
                  Yuk Wah Wong},
  title        = {Comparative experiments on learning information extractors for proteins
                  and their interactions},
  journal      = {Artif. Intell. Medicine},
  volume       = {33},
  number       = {2},
  pages        = {139--155},
  year         = {2005},
  url          = {https://doi.org/10.1016/j.artmed.2004.07.016},
  doi          = {10.1016/J.ARTMED.2004.07.016},
  timestamp    = {Thu, 20 Feb 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/artmed/BunescuGKMMRW05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DateM05,
  author       = {Shailesh V. Date and
                  Edward M. Marcotte},
  title        = {Protein function prediction using the Protein Link EXplorer {(PLEX)}},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {10},
  pages        = {2558--2559},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti313},
  doi          = {10.1093/BIOINFORMATICS/BTI313},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DateM05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/RamaniBMM05,
  author       = {Arun K. Ramani and
                  Razvan C. Bunescu and
                  Raymond J. Mooney and
                  Edward M. Marcotte},
  editor       = {K. Bretonnel Cohen and
                  Lynette Hirschman and
                  Hagit Shatkay and
                  Christian Blaschke},
  title        = {Using Biomedical Literature Mining to Consolidate the Set of Known
                  Human Protein-Protein Interactions},
  booktitle    = {Proceedings of the {ACL-ISMB} Workshop on Linking Biological Literature,
                  Ontologies and Databases: Mining Biological Semantics@ISMB 2005, Detroit,
                  MI, {USA} June 24, 2005},
  pages        = {46--53},
  publisher    = {Association for Computational Linguistics},
  year         = {2005},
  url          = {https://aclanthology.org/W05-1307/},
  timestamp    = {Fri, 06 Aug 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ismb/RamaniBMM05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DhillonMR03,
  author       = {Inderjit S. Dhillon and
                  Edward M. Marcotte and
                  Usman Roshan},
  title        = {Diametrical clustering for identifying anti-correlated gene clusters},
  journal      = {Bioinform.},
  volume       = {19},
  number       = {13},
  pages        = {1612--1619},
  year         = {2003},
  url          = {https://doi.org/10.1093/bioinformatics/btg209},
  doi          = {10.1093/BIOINFORMATICS/BTG209},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DhillonMR03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/Marcotte02,
  author       = {Edward M. Marcotte},
  editor       = {Julio Collado{-}Vides and
                  Ralf Hofest{\"{a}}dt},
  title        = {Predicting Protein Function and Nworks on a Genomewide Scale},
  booktitle    = {Gene Regulations and Metabolism - Postgenomic Computational Approaches},
  pages        = {223--249},
  publisher    = {{MIT} Press},
  year         = {2002},
  timestamp    = {Tue, 20 Aug 2002 13:42:34 +0200},
  biburl       = {https://dblp.org/rec/conf/dagstuhl/Marcotte02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MarcotteD01,
  author       = {Edward M. Marcotte and
                  Shailesh V. Date},
  title        = {Exploiting Big Biology: Integrating Large-scale Biological Data for
                  Function Inference},
  journal      = {Briefings Bioinform.},
  volume       = {2},
  number       = {4},
  pages        = {363--374},
  year         = {2001},
  url          = {https://doi.org/10.1093/bib/2.4.363},
  doi          = {10.1093/BIB/2.4.363},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/MarcotteD01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarcotteXE01,
  author       = {Edward M. Marcotte and
                  Ioannis Xenarios and
                  David S. Eisenberg},
  title        = {Mining literature for protein-protein interactions},
  journal      = {Bioinform.},
  volume       = {17},
  number       = {4},
  pages        = {359--363},
  year         = {2001},
  url          = {https://doi.org/10.1093/bioinformatics/17.4.359},
  doi          = {10.1093/BIOINFORMATICS/17.4.359},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MarcotteXE01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/XenariosFSDTME01,
  author       = {Ioannis Xenarios and
                  Esteban Fernandez and
                  Lukasz Salw{\'{\i}}nski and
                  Xiaoqun Joyce Duan and
                  Michael J. Thompson and
                  Edward M. Marcotte and
                  David S. Eisenberg},
  title        = {{DIP:} The Database of Interacting Proteins: 2001 update},
  journal      = {Nucleic Acids Res.},
  volume       = {29},
  number       = {1},
  pages        = {239--241},
  year         = {2001},
  url          = {https://doi.org/10.1093/nar/29.1.239},
  doi          = {10.1093/NAR/29.1.239},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/XenariosFSDTME01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/XenariosRSBME00,
  author       = {Ioannis Xenarios and
                  Danny W. Rice and
                  Lukasz Salw{\'{\i}}nski and
                  Marisa K. Baron and
                  Edward M. Marcotte and
                  David S. Eisenberg},
  title        = {{DIP:} the Database of Interacting Proteins},
  journal      = {Nucleic Acids Res.},
  volume       = {28},
  number       = {1},
  pages        = {289--291},
  year         = {2000},
  url          = {https://doi.org/10.1093/nar/28.1.289},
  doi          = {10.1093/NAR/28.1.289},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/XenariosRSBME00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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