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ORCIDBibTeX records: Ole Lund
@article{DBLP:journals/bioinformatics/AllesoeLPCFKLC21,
author = {Rosa L. Alles{\o}e and
Camilla K. Lemvigh and
My V. T. Phan and
Philip T. L. C. Clausen and
Alfred F. Florensa and
Marion Koopmans and
Ole Lund and
Matthew Cotten},
title = {Automated download and clean-up of family-specific databases for kmer-based
virus identification},
journal = {Bioinform.},
volume = {37},
number = {5},
pages = {705--710},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa857},
doi = {10.1093/BIOINFORMATICS/BTAA857},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AllesoeLPCFKLC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/AmidPSJLDPVXABC19,
author = {Clara Amid and
Nima Pakseresht and
Nicole Silvester and
Suran Jayathilaka and
Ole Lund and
Lukasz D. Dynovski and
B{\'{a}}lint {\'{A}} Pataki and
D{\'{a}}vid Visontai and
Basil Britto Xavier and
Blaise T. F. Alako and
Ariane Belka and
Jose L. B. Cisneros and
Matthew Cotten and
George B. Haringhuizen and
Peter W. Harrison and
Dirk H{\"{o}}per and
Sam Holt and
Camilla Hundahl and
Abdulrahman Hussein and
Rolf S. Kaas and
Xin Liu and
Rasko Leinonen and
Surbhi Malhotra{-}Kumar and
David F. Nieuwenhuijse and
Nadim Rahman and
Carolina dos S. Ribeiro and
Jeffrey E. Skiby and
Dennis Schmitz and
J{\'{o}}zsef St{\'{e}}ger and
J{\'{a}}nos M. Szalai{-}Gindl and
Martin Christen Fr{\o}lund Thomsen and
Simone M. Cacci{\`{o}} and
Istv{\'{a}}n Csabai and
Annelies Kroneman and
Marion Koopmans and
Frank Aarestrup and
Guy Cochrane},
title = {The {COMPARE} Data Hubs},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {baz136},
year = {2019},
url = {https://doi.org/10.1093/database/baz136},
doi = {10.1093/DATABASE/BAZ136},
timestamp = {Mon, 25 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/AmidPSJLDPVXABC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Matey-Hernandez18,
author = {Maria Luisa Matey{-}Hernandez and
Lasse Maretty and
Jacob Malte Jensen and
Bent Petersen and
Jonas Andreas Sibbesen and
Siyang Liu and
Palle Villesen and
Laurits Skov and
Kirstine Belling and
Christian Theil Have and
Jos{\'{e}} M. G. Izarzugaza and
Marie Grosjean and
Jette Bork{-}Jensen and
Jakob Grove and
Thomas D. Als and
Shujia Huang and
Yuqi Chang and
Ruiqi Xu and
Weijian Ye and
Junhua Rao and
Xiaosen Guo and
Jihua Sun and
Hongzhi Cao and
Chen Ye and
John van Beusekom and
Thomas Espeseth and
Esben N. Flindt and
Rune M. Friborg and
Anders E. Halager and
Stephanie Le Hellard and
Christina M. Hultman and
Francesco Lescai and
Shengting Li and
Ole Lund and
Peter L{\o}ngreen and
Thomas Mailund and
Ole Mors and
Christian N. S. Pedersen and
Thomas Sicheritz{-}Pont{\'{e}}n and
Patrick F. Sullivan and
Ali Syed and
David Westergaard and
Rachita Yadav and
Ning Li and
Xun Xu and
Torben Hansen and
Anders Krogh and
Lars Bolund and
Thorkild I. A. S{\o}rensen and
Oluf Pedersen and
Ramneek Gupta and
Simon Rasmussen and
S{\o}ren Besenbacher and
Anders D. B{\o}rglum and
Jun Wang and
Hans Eiberg and
Karsten Kristiansen and
Mikkel Heide Schierup and
S{\o}ren Brunak},
title = {Benchmarking the {HLA} typing performance of Polysolver and Optitype
in 50 Danish parental trios},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {239:1--239:12},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2239-6},
doi = {10.1186/S12859-018-2239-6},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Matey-Hernandez18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ClausenAL18,
author = {Philip T. L. C. Clausen and
Frank Aarestrup and
Ole Lund},
title = {Rapid and precise alignment of raw reads against redundant databases
with {KMA}},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {307:1--307:8},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2336-6},
doi = {10.1186/S12859-018-2336-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ClausenAL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ThomsenHWKL17,
author = {Martin Christen Fr{\o}lund Thomsen and
Henrik Hasman and
Henrik Westh and
H{\"{u}}lya Kaya and
Ole Lund},
title = {{RUCS:} rapid identification of {PCR} primers for unique core sequences},
journal = {Bioinform.},
volume = {33},
number = {24},
pages = {3917--3921},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx526},
doi = {10.1093/BIOINFORMATICS/BTX526},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ThomsenHWKL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/MarettyJPSLVSBH17,
author = {Lasse Maretty and
Jacob Malte Jensen and
Bent Petersen and
Jonas Andreas Sibbesen and
Siyang Liu and
Palle Villesen and
Laurits Skov and
Kirstine Belling and
Christian Theil Have and
Jos{\'{e}} M. G. Izarzugaza and
Marie Grosjean and
Jette Bork{-}Jensen and
Jakob Grove and
Thomas D. Als and
Shujia Huang and
Yuqi Chang and
Ruiqi Xu and
Weijian Ye and
Junhua Rao and
Xiaosen Guo and
Jihua Sun and
Hongzhi Cao and
Chen Ye and
John van Beusekom and
Thomas Espeseth and
Esben N. Flindt and
Rune M. Friborg and
Anders E. Halager and
Stephanie Le Hellard and
Christina M. Hultman and
Francesco Lescai and
Shengting Li and
Ole Lund and
Peter L{\o}ngreen and
Thomas Mailund and
Maria Luisa Matey{-}Hernandez and
Ole Mors and
Christian N. S. Pedersen and
Thomas Sicheritz{-}Pont{\'{e}}n and
Patrick F. Sullivan and
Ali Syed and
David Westergaard and
Rachita Yadav and
Ning Li and
Xun Xu and
Torben Hansen and
Anders Krogh and
Lars Bolund and
Thorkild I. A. S{\o}rensen and
Oluf Pedersen and
Ramneek Gupta and
Simon Rasmussen and
S{\o}ren Besenbacher and
Anders D. B{\o}rglum and
Jun Wang and
Hans Eiberg and
Karsten Kristiansen and
S{\o}ren Brunak and
Mikkel Heide Schierup},
title = {Sequencing and \emph{de novo} assembly of 150 genomes from Denmark
as a population reference},
journal = {Nat.},
volume = {548},
number = {7665},
pages = {87--91},
year = {2017},
url = {https://doi.org/10.1038/nature23264},
doi = {10.1038/NATURE23264},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nature/MarettyJPSLVSBH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/KringelumKBLOT16,
author = {Jens Kringelum and
Sonny Kim Kj{\ae}rulff and
S{\o}ren Brunak and
Ole Lund and
Tudor I. Oprea and
Olivier Taboureau},
title = {ChemProt-3.0: a global chemical biology diseases mapping},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/bav123},
doi = {10.1093/DATABASE/BAV123},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/KringelumKBLOT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TrolleMGKSLSPN15,
author = {Thomas Trolle and
Imir G. Metushi and
Jason A. Greenbaum and
Yohan Kim and
John Sidney and
Ole Lund and
Alessandro Sette and
Bjoern Peters and
Morten Nielsen},
title = {Automated benchmarking of peptide-MHC class {I} binding predictions},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2174--2181},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv123},
doi = {10.1093/BIOINFORMATICS/BTV123},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TrolleMGKSLSPN15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SaputraRLHSALS15,
author = {Dhany Saputra and
Simon Rasmussen and
Mette V. Larsen and
Nizar Haddad and
Maria Sperotto and
Frank Aarestrup and
Ole Lund and
Thomas Sicheritz{-}Pont{\'{e}}n},
title = {Reads2Type: a web application for rapid microbial taxonomy identification},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {398:1--398:10},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0829-0},
doi = {10.1186/S12859-015-0829-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SaputraRLHSALS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AndreattaLN13,
author = {Massimo Andreatta and
Ole Lund and
Morten Nielsen},
title = {Simultaneous alignment and clustering of peptide data using a Gibbs
sampling approach},
journal = {Bioinform.},
volume = {29},
number = {1},
pages = {8--14},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/bts621},
doi = {10.1093/BIOINFORMATICS/BTS621},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AndreattaLN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KjaerulffWKJKALBOT13,
author = {Sonny Kim Kj{\ae}rulff and
Louis Wich and
Jens Kringelum and
Ulrik Plesner Jacobsen and
Irene Kouskoumvekaki and
Karine Audouze and
Ole Lund and
S{\o}ren Brunak and
Tudor I. Oprea and
Olivier Taboureau},
title = {ChemProt-2.0: visual navigation in a disease chemical biology database},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {464--469},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1166},
doi = {10.1093/NAR/GKS1166},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KjaerulffWKJKALBOT13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JessenHLN13,
author = {Leon Eyrich Jessen and
Ilka Hoof and
Ole Lund and
Morten Nielsen},
title = {\emph{SigniSite}: Identification of residue-level genotype-phenotype
correlations in protein multiple sequence alignments},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Webserver-Issue},
pages = {286--291},
year = {2013},
url = {https://doi.org/10.1093/nar/gkt497},
doi = {10.1093/NAR/GKT497},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/JessenHLN13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KimPZTWGLSLBNP12,
author = {Yohan Kim and
Julia V. Ponomarenko and
Zhanyang Zhu and
Dorjee Tamang and
Peng Wang and
Jason Greenbaum and
Claus Lundegaard and
Alessandro Sette and
Ole Lund and
Philip E. Bourne and
Morten Nielsen and
Bjoern Peters},
title = {Immune epitope database analysis resource},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Web-Server-Issue},
pages = {525--530},
year = {2012},
url = {https://doi.org/10.1093/nar/gks438},
doi = {10.1093/NAR/GKS438},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KimPZTWGLSLBNP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KringelumLLN12,
author = {Jens Vindahl Kringelum and
Claus Lundegaard and
Ole Lund and
Morten Nielsen},
title = {Reliable {B} Cell Epitope Predictions: Impacts of Method Development
and Improved Benchmarking},
journal = {PLoS Comput. Biol.},
volume = {8},
number = {12},
year = {2012},
url = {https://doi.org/10.1371/journal.pcbi.1002829},
doi = {10.1371/JOURNAL.PCBI.1002829},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/KringelumLLN12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RapinLC11,
author = {Nicolas Rapin and
Ole Lund and
Filippo Castiglione},
title = {Immune system simulation online},
journal = {Bioinform.},
volume = {27},
number = {14},
pages = {2013--2014},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr335},
doi = {10.1093/BIOINFORMATICS/BTR335},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RapinLC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangSKSLNP10,
author = {Peng Wang and
John Sidney and
Yohan Kim and
Alessandro Sette and
Ole Lund and
Morten Nielsen and
Bj{\"{o}}rn Peters},
title = {Peptide binding predictions for {HLA} DR, {DP} and {DQ} molecules},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {568},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-568},
doi = {10.1186/1471-2105-11-568},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangSKSLNP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NielsenLLP10,
author = {Morten Nielsen and
Claus Lundegaard and
Ole Lund and
Thomas Nordahl Petersen},
title = {CPHmodels-3.0 - remote homology modeling using structure-guided sequence
profiles},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Web-Server-Issue},
pages = {576--581},
year = {2010},
url = {https://doi.org/10.1093/nar/gkq535},
doi = {10.1093/NAR/GKQ535},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NielsenLLP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LundegaardBKLPN10,
author = {Claus Lundegaard and
M. Buggert and
A. C. Karlsson and
Ole Lund and
Carina Perez and
Morten Nielsen},
editor = {Aidong Zhang and
Mark Borodovsky and
Gultekin {\"{O}}zsoyoglu and
Armin R. Mikler},
title = {PopCover: a method for selecting of peptides with optimal population
and pathogen coverage},
booktitle = {Proceedings of the First {ACM} International Conference on Bioinformatics
and Computational Biology, {BCB} 2010, Niagara Falls, NY, USA, August
2-4, 2010},
pages = {658--659},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1854776.1854905},
doi = {10.1145/1854776.1854905},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/LundegaardBKLPN10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLN09a,
author = {Hao Zhang and
Ole Lund and
Morten Nielsen},
title = {The PickPocket method for predicting binding specificities for receptors
based on receptor pocket similarities: application to MHC-peptide
binding},
journal = {Bioinform.},
volume = {25},
number = {10},
pages = {1293--1299},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp137},
doi = {10.1093/BIOINFORMATICS/BTP137},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLN09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NielsenL09,
author = {Morten Nielsen and
Ole Lund},
title = {\emph{NN-align}. An artificial neural network-based alignment algorithm
for {MHC} class {II} peptide binding prediction},
journal = {{BMC} Bioinform.},
volume = {10},
pages = {296},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-296},
doi = {10.1186/1471-2105-10-296},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NielsenL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LundegaardLN08,
author = {Claus Lundegaard and
Ole Lund and
Morten Nielsen},
title = {Accurate approximation method for prediction of class {I} {MHC} affinities
for peptides of length 8, 10 and 11 using prediction tools trained
on 9mers},
journal = {Bioinform.},
volume = {24},
number = {11},
pages = {1397--1398},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn128},
doi = {10.1093/BIOINFORMATICS/BTN128},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LundegaardLN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LundegaardLHBLN08,
author = {Claus Lundegaard and
Kasper Lamberth and
Mikkel Harndahl and
S{\o}ren Buus and
Ole Lund and
Morten Nielsen},
title = {NetMHC-3.0: accurate web accessible predictions of human, mouse and
monkey {MHC} class {I} affinities for peptides of length 8-11},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Web-Server-Issue},
pages = {509--512},
year = {2008},
url = {https://doi.org/10.1093/nar/gkn202},
doi = {10.1093/NAR/GKN202},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LundegaardLHBLN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangWKHBBBBFGLLNPSZP08,
author = {Qing Zhang and
Peng Wang and
Yohan Kim and
Pernille Haste{-}Andersen and
John E. Beaver and
Philip E. Bourne and
Huynh{-}Hoa Bui and
S{\o}ren Buus and
Sune Frankild and
Jason Greenbaum and
Ole Lund and
Claus Lundegaard and
Morten Nielsen and
Julia V. Ponomarenko and
Alessandro Sette and
Zhanyang Zhu and
Bj{\"{o}}rn Peters},
title = {Immune epitope database analysis resource {(IEDB-AR)}},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Web-Server-Issue},
pages = {513--518},
year = {2008},
url = {https://doi.org/10.1093/nar/gkn254},
doi = {10.1093/NAR/GKN254},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhangWKHBBBBFGLLNPSZP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/NielsenLBPSJBL08,
author = {Morten Nielsen and
Claus Lundegaard and
Thomas Blicher and
Bjoern Peters and
Alessandro Sette and
Sune Justesen and
S{\o}ren Buus and
Ole Lund},
title = {Quantitative Predictions of Peptide Binding to Any {HLA-DR} Molecule
of Known Sequence: NetMHCIIpan},
journal = {PLoS Comput. Biol.},
volume = {4},
number = {7},
year = {2008},
url = {https://doi.org/10.1371/journal.pcbi.1000107},
doi = {10.1371/JOURNAL.PCBI.1000107},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/NielsenLBPSJBL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LundegaardLKBN07,
author = {Claus Lundegaard and
Ole Lund and
Can Kesmir and
S{\o}ren Brunak and
Morten Nielsen},
title = {Modeling the adaptive immune system: predictions and simulations},
journal = {Bioinform.},
volume = {23},
number = {24},
pages = {3265--3275},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm471},
doi = {10.1093/BIOINFORMATICS/BTM471},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LundegaardLKBN07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LarsenLLBLN07,
author = {Mette V. Larsen and
Claus Lundegaard and
Kasper Lamberth and
S{\o}ren Buus and
Ole Lund and
Morten Nielsen},
title = {Large-scale validation of methods for cytotoxic T-lymphocyte epitope
prediction},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-424},
doi = {10.1186/1471-2105-8-424},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LarsenLLBLN07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NielsenLL07,
author = {Morten Nielsen and
Claus Lundegaard and
Ole Lund},
title = {Prediction of {MHC} class {II} binding affinity using SMM-align, a
novel stabilization matrix alignment method},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-238},
doi = {10.1186/1471-2105-8-238},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NielsenLL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PetersBFNLKBLHFWSLBS06,
author = {Bjoern Peters and
Huynh{-}Hoa Bui and
Sune Frankild and
Morten Nielsen and
Claus Lundegaard and
Emrah Kostem and
Derek Basch and
Kasper Lamberth and
Mikkel Harndahl and
Ward Fleri and
Stephen S. Wilson and
John Sidney and
Ole Lund and
S{\o}ren Buus and
Alessandro Sette},
title = {A Community Resource Benchmarking Predictions of Peptide Binding to
{MHC-I} Molecules},
journal = {PLoS Comput. Biol.},
volume = {2},
number = {6},
year = {2006},
url = {https://doi.org/10.1371/journal.pcbi.0020065},
doi = {10.1371/JOURNAL.PCBI.0020065},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/PetersBFNLKBLHFWSLBS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/prib/SetteBSBBFKLNPSSWWP06,
author = {Alessandro Sette and
Huynh{-}Hoa Bui and
John Sidney and
Philip E. Bourne and
S{\o}ren Buus and
Ward Fleri and
R. Kubo and
Ole Lund and
D. Nemazee and
Julia V. Ponomarenko and
Muthu Sathiamurthy and
Scott Stewart and
Scott Way and
Stephen S. Wilson and
Bj{\"{o}}rn Peters},
editor = {Jagath C. Rajapakse and
Limsoon Wong and
Raj Acharya},
title = {The Immune Epitope Database and Analysis Resource},
booktitle = {Pattern Recognition in Bioinformatics, International Workshop, {PRIB}
2006, Hong Kong, China, August 20, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4146},
pages = {126--132},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11818564\_14},
doi = {10.1007/11818564\_14},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/prib/SetteBSBBFKLNPSSWWP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:books/daglib/0014218,
author = {Ole Lund and
Morten Nielsen and
Claus Lundegaard and
Can Kesmir and
S{\o}ren Brunak},
title = {Immunological bioinformatics},
series = {Computational molecular biology},
publisher = {{AAAI} Press},
year = {2005},
isbn = {978-0-262-12280-1},
timestamp = {Fri, 12 Jul 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/books/daglib/0014218.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NielsenLWSLBBL04,
author = {Morten Nielsen and
Claus Lundegaard and
Peder Worning and
Christina Sylvester{-}Hvid and
Kasper Lamberth and
S{\o}ren Buus and
S{\o}ren Brunak and
Ole Lund},
title = {Improved prediction of {MHC} class {I} and class {II} epitopes using
a novel Gibbs sampling approach},
journal = {Bioinform.},
volume = {20},
number = {9},
pages = {1388--1397},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth100},
doi = {10.1093/BIOINFORMATICS/BTH100},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NielsenLWSLBBL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KiemerLBB04,
author = {Lars Kiemer and
Ole Lund and
S{\o}ren Brunak and
Nikolaj Blom},
title = {Coronavirus 3CL\({}^{\mbox{\emph{pro }}}\)proteinase cleavage sites:
Possible relevance to {SARS} virus pathology},
journal = {{BMC} Bioinform.},
volume = {5},
pages = {72},
year = {2004},
url = {https://doi.org/10.1186/1471-2105-5-72},
doi = {10.1186/1471-2105-5-72},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KiemerLBB04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icaris/LundegaardNLWSBBL04,
author = {Claus Lundegaard and
Morten Nielsen and
Kasper Lamberth and
Peder Worning and
Christina Sylvester{-}Hvid and
S{\o}ren Buus and
S{\o}ren Brunak and
Ole Lund},
editor = {Giuseppe Nicosia and
Vincenzo Cutello and
Peter J. Bentley and
Jon Timmis},
title = {{MHC} Class {I} Epitope Binding Prediction Trained on Small Data Sets},
booktitle = {Artificial Immune Systems, Third International Conference, {ICARIS}
2004, Catania, Sicily, Italy, September 13-16, 2004},
series = {Lecture Notes in Computer Science},
volume = {3239},
pages = {217--225},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30220-9\_18},
doi = {10.1007/978-3-540-30220-9\_18},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icaris/LundegaardNLWSBBL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neco/ChristensenLNLWLBBL03,
author = {Jens Kaae Christensen and
Kasper Lamberth and
Morten Nielsen and
Claus Lundegaard and
Peder Worning and
Sanne Lise Lauem{\o}ller and
S{\o}ren Buus and
S{\o}ren Brunak and
Ole Lund},
title = {Selecting Informative Data for Developing Peptide-MHC Binding Predictors
Using a Query by Committee Approach},
journal = {Neural Comput.},
volume = {15},
number = {12},
pages = {2931--2942},
year = {2003},
url = {https://doi.org/10.1162/089976603322518803},
doi = {10.1162/089976603322518803},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neco/ChristensenLNLWLBBL03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/msps/LundegaardPNBBBGL03,
author = {Claus Lundegaard and
Thomas Nordahl Petersen and
Morten Nielsen and
Henrik Bohr and
Jakob Bohr and
S{\o}ren Brunak and
Garry Gippert and
Ole Lund},
editor = {Concettina Guerra and
Sorin Istrail},
title = {Prediction of Protein Secondary Structure at High Accuracy Using a
Combination of Many Neural Networks},
booktitle = {Mathematical Methods for Protein Structure Analysis and Design, Advanced
Lectures},
series = {Lecture Notes in Computer Science},
volume = {2666},
pages = {117--122},
publisher = {Springer},
year = {2003},
url = {https://doi.org/10.1007/978-3-540-44827-3\_7},
doi = {10.1007/978-3-540-44827-3\_7},
timestamp = {Tue, 14 May 2019 10:00:42 +0200},
biburl = {https://dblp.org/rec/conf/msps/LundegaardPNBBBGL03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GorodkinSLB99,
author = {Jan Gorodkin and
Hans Henrik St{\ae}rfeldt and
Ole Lund and
S{\o}ren Brunak},
title = {MatrixPlot: visualizing sequence constraints},
journal = {Bioinform.},
volume = {15},
number = {9},
pages = {769--770},
year = {1999},
url = {https://doi.org/10.1093/bioinformatics/15.9.769},
doi = {10.1093/BIOINFORMATICS/15.9.769},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GorodkinSLB99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/GorodkinLAB99,
author = {Jan Gorodkin and
Ole Lund and
Claus A. F. Andersen and
S{\o}ren Brunak},
editor = {Thomas Lengauer and
Reinhard Schneider and
Peer Bork and
Douglas L. Brutlag and
Janice I. Glasgow and
Hans{-}Werner Mewes and
Ralf Zimmer},
title = {Using Sequence Motifs for Enhanced Neural Network Prediction of Protein
Distance Constraints},
booktitle = {Proceedings of the Seventh International Conference on Intelligent
Systems for Molecular Biology, August 6-10, 1999, Heidelberg, Germany},
pages = {95--105},
publisher = {{AAAI}},
year = {1999},
url = {http://www.aaai.org/Library/ISMB/1999/ismb99-012.php},
timestamp = {Mon, 24 Jun 2013 09:48:15 +0200},
biburl = {https://dblp.org/rec/conf/ismb/GorodkinLAB99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HansenLNRB98,
author = {Jan E. Hansen and
Ole Lund and
Jette Nilsson and
Kristoffer Rapacki and
S{\o}ren Brunak},
title = {{O-GLYCBASE} Version 3.0: a revised database of O-glycosylated proteins},
journal = {Nucleic Acids Res.},
volume = {26},
number = {1},
pages = {387--389},
year = {1998},
url = {https://doi.org/10.1093/nar/26.1.387},
doi = {10.1093/NAR/26.1.387},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HansenLNRB98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HansenLRB97,
author = {Jan E. Hansen and
Ole Lund and
Kristoffer Rapacki and
S{\o}ren Brunak},
title = {{O-GLYCBASE} version 2.0: a revised database of O-glycosylated proteins},
journal = {Nucleic Acids Res.},
volume = {25},
number = {1},
pages = {278--282},
year = {1997},
url = {https://doi.org/10.1093/nar/25.1.278},
doi = {10.1093/NAR/25.1.278},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HansenLRB97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HansenLNHB96,
author = {Jan E. Hansen and
Ole Lund and
Jens O. Nielsen and
John{-}E. S. Hansen and
S{\o}ren Brunak},
title = {{O-GLYCBASE:} a revised database of O-glycosylated proteins},
journal = {Nucleic Acids Res.},
volume = {24},
number = {1},
pages = {248--252},
year = {1996},
url = {https://doi.org/10.1093/nar/24.1.248},
doi = {10.1093/NAR/24.1.248},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HansenLNHB96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/simpra/LundMH93,
author = {Ole Lund and
Erik Mosekilde and
Jan E. Hansen},
title = {Period doubling route to chaos in a model of {HIV} infection of the
immune system: {A} comment on the Anderson-May model},
journal = {Simul. Pract. Theory},
volume = {1},
number = {2},
pages = {49--55},
year = {1993},
url = {https://doi.org/10.1016/0928-4869(93)90015-I},
doi = {10.1016/0928-4869(93)90015-I},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/simpra/LundMH93.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eurosim/LundMH92,
author = {Ole Lund and
Erik Mosekilde and
Jan E. Hansen},
editor = {Franco Maceri and
Giuseppe Iazeolla},
title = {Period Doubling Route to Chaos in a Model of {HIV} infection of the
Immune System},
booktitle = {Eurosim 1992, Simulation Congress, Proceedings of the 1992 {EUROSIM}
Conference, Capri, Italy, September 28 - October 4, 1992},
pages = {601--606},
publisher = {Elsevier},
year = {1992},
timestamp = {Thu, 01 Jun 2023 13:15:48 +0200},
biburl = {https://dblp.org/rec/conf/eurosim/LundMH92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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