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ORCIDBibTeX records: Xiaole Shirley Liu
@article{DBLP:journals/gpb/ZhangBCDCSZZGZLFTL22,
author = {Wubing Zhang and
Shourya S. Roy Burman and
Jiaye Chen and
Katherine A. Donovan and
Yang Cao and
Chelsea Shu and
Boning Zhang and
Zexian Zeng and
Shengqing Gu and
Yi Zhang and
Dian Li and
Eric S. Fischer and
Collin Tokheim and
X. Shirley Liu},
title = {Machine Learning Modeling of Protein-intrinsic Features Predicts Tractability
of Targeted Protein Degradation},
journal = {Genom. Proteom. Bioinform.},
volume = {20},
number = {5},
pages = {882--898},
year = {2022},
url = {https://doi.org/10.1016/j.gpb.2022.11.008},
doi = {10.1016/J.GPB.2022.11.008},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/ZhangBCDCSZZGZLFTL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZengWYOLZGZLWFZ22,
author = {Zexian Zeng and
Cheryl J. Wong and
Lin Yang and
Nofal Ouardaoui and
Dian Li and
Wubing Zhang and
Shengqing Gu and
Yi Zhang and
Yang Liu and
Xiaoqing Wang and
Jingxin Fu and
Liye Zhou and
Boning Zhang and
Sarah Kim and
Kathleen B. Yates and
Myles Brown and
Gordon J. Freeman and
Ravindra Uppaluri and
Robert Manguso and
X. Shirley Liu},
title = {{TISMO:} syngeneic mouse tumor database to model tumor immunity and
immunotherapy response},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {1391--1397},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab804},
doi = {10.1093/NAR/GKAB804},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZengWYOLZGZLWFZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/QiuFFXKTPGLCZJB21,
author = {Xintao Qiu and
Avery S. Feit and
Ariel Feiglin and
Yingtian Xie and
Nikolas Kesten and
Len Taing and
Joseph Perkins and
Shengqing Gu and
Yihao Li and
Paloma Cejas and
Ningxuan Zhou and
Rinath Jeselsohn and
Myles Brown and
X. Shirley Liu and
Henry W. Long},
title = {CoBRA: Containerized Bioinformatics Workflow for Reproducible ChIP/ATAC-seq
Analysis},
journal = {Genom. Proteom. Bioinform.},
volume = {19},
number = {4},
pages = {652--661},
year = {2021},
url = {https://doi.org/10.1016/j.gpb.2020.11.007},
doi = {10.1016/J.GPB.2020.11.007},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/QiuFFXKTPGLCZJB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/natmi/ZhangLL21,
author = {Yi Zhang and
Yang Liu and
X. Shirley Liu},
title = {Neural network architecture search with {AMBER}},
journal = {Nat. Mach. Intell.},
volume = {3},
number = {5},
pages = {372--373},
year = {2021},
url = {https://doi.org/10.1038/s42256-021-00350-x},
doi = {10.1038/S42256-021-00350-X},
timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/natmi/ZhangLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/LiWGJSCHSWTLLWB20,
author = {Ziyi Li and
Binbin Wang and
Shengqing Gu and
Peng Jiang and
Avinash Das Sahu and
Chen{-}Hao Chen and
Tong Han and
Sailing Shi and
Xiaoqing Wang and
Nicole Traugh and
Hailing Liu and
Yin Liu and
Qiu Wu and
Myles Brown and
Tengfei Xiao and
Genevieve M. Boland and
Xiaole Shirley Liu},
title = {{CRISPR} Screens Identify Essential Cell Growth Mediators in {BRAF}
Inhibitor-resistant Melanoma},
journal = {Genom. Proteom. Bioinform.},
volume = {18},
number = {1},
pages = {26--40},
year = {2020},
url = {https://doi.org/10.1016/j.gpb.2020.02.002},
doi = {10.1016/J.GPB.2020.02.002},
timestamp = {Wed, 04 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/LiWGJSCHSWTLLWB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiFZCLCLL20,
author = {Taiwen Li and
Jingxin Fu and
Zexian Zeng and
David Cohen and
Jing Li and
Qianming Chen and
Bo Li and
Xiaole Shirley Liu},
title = {{TIMER2.0} for analysis of tumor-infiltrating immune cells},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Webserver-Issue},
pages = {W509--W514},
year = {2020},
url = {https://doi.org/10.1093/nar/gkaa407},
doi = {10.1093/NAR/GKAA407},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiFZCLCLL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KosterBL19,
author = {Johannes K{\"{o}}ster and
Myles Brown and
Xiaole Shirley Liu},
title = {A Bayesian model for single cell transcript expression analysis on
{MERFISH} data},
journal = {Bioinform.},
volume = {35},
number = {6},
pages = {995--1001},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty718},
doi = {10.1093/BIOINFORMATICS/BTY718},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KosterBL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KosterBL19a,
author = {Johannes K{\"{o}}ster and
Myles Brown and
Xiaole Shirley Liu},
title = {A Bayesian model for single cell transcript expression analysis on
{MERFISH} data},
journal = {Bioinform.},
volume = {35},
number = {13},
pages = {2347},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty857},
doi = {10.1093/BIOINFORMATICS/BTY857},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KosterBL19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhengWMQWSCBZML19,
author = {Rongbin Zheng and
Changxin Wan and
Shenglin Mei and
Qian Qin and
Qiu Wu and
Hanfei Sun and
Chen{-}Hao Chen and
Myles Brown and
Xiaoyan Zhang and
Clifford A. Meyer and
Xiaole Shirley Liu},
title = {Cistrome Data Browser: expanded datasets and new tools for gene regulatory
analysis},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D729--D735},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1094},
doi = {10.1093/NAR/GKY1094},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhengWMQWSCBZML19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiWZFDML19,
author = {Shaojuan Li and
Changxin Wan and
Rongbin Zheng and
Jingyu Fan and
Xin Dong and
Clifford A. Meyer and
Xiaole Shirley Liu},
title = {Cistrome-GO: a web server for functional enrichment analysis of transcription
factor ChIP-seq peaks},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Webserver-Issue},
pages = {W206--W211},
year = {2019},
url = {https://doi.org/10.1093/nar/gkz332},
doi = {10.1093/NAR/GKZ332},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiWZFDML19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenXXJMLBL18,
author = {Chen{-}Hao Chen and
Tengfei Xiao and
Han Xu and
Peng Jiang and
Clifford A. Meyer and
Wei Li and
Myles Brown and
Xiaole Shirley Liu},
title = {Improved design and analysis of {CRISPR} knockout screens},
journal = {Bioinform.},
volume = {34},
number = {23},
pages = {4095--4101},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty450},
doi = {10.1093/BIOINFORMATICS/BTY450},
timestamp = {Wed, 04 Sep 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenXXJMLBL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/CornwellVTHKLSL18,
author = {MacIntosh Cornwell and
Mahesh Vangala and
Len Taing and
Zachary Herbert and
Johannes K{\"{o}}ster and
Bo Li and
Hanfei Sun and
Taiwen Li and
Jian Zhang and
Xintao Qiu and
Matthew Pun and
Rinath Jeselsohn and
Myles Brown and
Xiaole Shirley Liu and
Henry W. Long},
title = {{VIPER:} Visualization Pipeline for RNA-seq, a Snakemake workflow
for efficient and complete RNA-seq analysis},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {135:1--135:14},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2139-9},
doi = {10.1186/S12859-018-2139-9},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/CornwellVTHKLSL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MeiQWSZZZWSTLBM17,
author = {Shenglin Mei and
Qian Qin and
Qiu Wu and
Hanfei Sun and
Rongbin Zheng and
Chongzhi Zang and
Muyuan Zhu and
Jiaxin Wu and
Xiaohui Shi and
Len Taing and
Tao Liu and
Myles Brown and
Clifford A. Meyer and
Xiaole Shirley Liu},
title = {Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility
data in human and mouse},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D658--D662},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw983},
doi = {10.1093/NAR/GKW983},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MeiQWSZZZWSTLBM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaKQHLCCWMLXL16,
author = {Jian Ma and
Johannes K{\"{o}}ster and
Qian Qin and
Shengen Hu and
Wei Li and
Chenhao Chen and
Qingyi Cao and
Jinzeng Wang and
Shenglin Mei and
Qi Liu and
Han Xu and
Xiaole Shirley Liu},
title = {{CRISPR-DO} for genome-wide {CRISPR} design and optimization},
journal = {Bioinform.},
volume = {32},
number = {21},
pages = {3336--3338},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw476},
doi = {10.1093/BIOINFORMATICS/BTW476},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MaKQHLCCWMLXL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ZhangWFWZL15,
author = {Naiqian Zhang and
Haiyun Wang and
Yun Fang and
Jun Wang and
Xiaoqi Zheng and
Xiaole Shirley Liu},
title = {Predicting Anticancer Drug Responses Using a Dual-Layer Integrated
Cell Line-Drug Network Model},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {9},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1004498},
doi = {10.1371/JOURNAL.PCBI.1004498},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ZhangWFWZL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangHSLWWQMZYLZ14,
author = {Qixuan Wang and
Jinyan Huang and
Hanfei Sun and
Jing Liu and
Juan Wang and
Qian Wang and
Qian Qin and
Shenglin Mei and
Chengchen Zhao and
Xiaoqin Yang and
Xiaole Shirley Liu and
Yong Zhang},
title = {{CR} Cistrome: a ChIP-Seq database for chromatin regulators and histone
modification linkages in human and mouse},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {450--458},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1151},
doi = {10.1093/NAR/GKT1151},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WangHSLWWQMZYLZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/HoJLALISMTAPGKR14,
author = {Joshua Wing Kei Ho and
Youngsook L. Jung and
Tao Liu and
Burak Han Alver and
Soohyun Lee and
Kohta Ikegami and
Kyung{-}Ah Sohn and
Aki Minoda and
Michael Y. Tolstorukov and
Alex Appert and
Stephen C. J. Parker and
Tingting Gu and
Anshul Kundaje and
Nicole C. Riddle and
Eric Bishop and
Thea A. Egelhofer and
Sheng'en Shawn Hu and
Artyom A. Alekseyenko and
Andreas Rechtsteiner and
Dalal Asker and
Jason A. Belsky and
Sarah K. Bowman and
Q. Brent Chen and
Ron A.{-}J. Chen and
Daniel S. Day and
Yan Dong and
Andrea C. Dose and
Xikun Duan and
Charles B. Epstein and
Sevinc Ercan and
Elise A. Feingold and
Francesco Ferrari and
Jacob M. Garrigues and
Nils Gehlenborg and
Peter J. Good and
Psalm Haseley and
Daniel He and
Moritz Herrmann and
Michael M. Hoffman and
Tess E. Jeffers and
Peter V. Kharchenko and
Paulina Kolasinska{-}Zwierz and
Chitra V. Kotwaliwale and
Nischay Kumar and
Sasha A. Langley and
Erica Larschan and
Isabel Latorre and
Maxwell W. Libbrecht and
Xueqiu Lin and
Richard Park and
Michael J. Pazin and
Hoang N. Pham and
Annette Plachetka and
Bo Qin and
Yuri B. Schwartz and
Noam Shoresh and
Przemyslaw Stempor and
Anne Vielle and
Chengyang Wang and
Christina M. Whittle and
Huiling Xue and
Robert E. Kingston and
Ju Han Kim and
Bradley E. Bernstein and
Abby F. Dernburg and
Vincenzo Pirrotta and
Mitzi I. Kuroda and
William S. Noble and
Thomas D. Tullius and
Manolis Kellis and
David M. MacAlpine and
Susan Strome and
Sarah C. R. Elgin and
Xiaole Shirley Liu and
Jason D. Lieb and
Julie Ahringer and
Gary H. Karpen and
Peter J. Park},
title = {Comparative analysis of metazoan chromatin organization Open},
journal = {Nat.},
volume = {512},
number = {7515},
pages = {449--452},
year = {2014},
url = {https://doi.org/10.1038/nature13415},
doi = {10.1038/NATURE13415},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nature/HoJLALISMTAPGKR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/quanbio/SunYWL14,
author = {Mengyi Sun and
Bingyu Yan and
Chengkun Wu and
Xiaole Shirley Liu},
title = {Meeting report on {YBPW} 2014 (the 3rd Young Bioinformatics PIs Workshop)},
journal = {Quant. Biol.},
volume = {2},
number = {2},
pages = {80--84},
year = {2014},
url = {https://doi.org/10.1007/s40484-014-0034-6},
doi = {10.1007/S40484-014-0034-6},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/quanbio/SunYWL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SunQLWLWLYTRBZLL13,
author = {Hanfei Sun and
Bo Qin and
Tao Liu and
Qixuan Wang and
Jing Liu and
Juan Wang and
Xueqiu Lin and
Yulin Yang and
Len Taing and
Prakash K. Rao and
Myles Brown and
Yong Zhang and
Henry Long and
Xiaole Shirley Liu},
title = {CistromeFinder for ChIP-seq and DNase-seq data reuse},
journal = {Bioinform.},
volume = {29},
number = {10},
pages = {1352--1354},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt135},
doi = {10.1093/BIOINFORMATICS/BTT135},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SunQLWLWLYTRBZLL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/quanbio/ShinLDZL13,
author = {Hyunjin Shin and
Tao Liu and
Xikun Duan and
Yong Zhang and
Xiaole Shirley Liu},
title = {Computational methodology for ChIP-seq analysis},
journal = {Quant. Biol.},
volume = {1},
number = {1},
pages = {54--70},
year = {2013},
url = {https://doi.org/10.1007/s40484-013-0006-2},
doi = {10.1007/S40484-013-0006-2},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/quanbio/ShinLDZL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/QinZGTLWWCSDHLLZL12,
author = {Bo Qin and
Meng Zhou and
Ying Ge and
Len Taing and
Tao Liu and
Qian Wang and
Su Wang and
Junsheng Chen and
Lingling Shen and
Xikun Duan and
Sheng'en Hu and
Wei Li and
Henry Long and
Yong Zhang and
Xiaole Shirley Liu},
title = {CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq
studies in mouse and human},
journal = {Bioinform.},
volume = {28},
number = {10},
pages = {1411--1412},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts157},
doi = {10.1093/BIOINFORMATICS/BTS157},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/QinZGTLWWCSDHLLZL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FuTFLZ12,
author = {Kai Fu and
Qianzi Tang and
Jianxing Feng and
Xiaole Shirley Liu and
Yong Zhang},
title = {DiNuP: a systematic approach to identify regions of differential nucleosome
positioning},
journal = {Bioinform.},
volume = {28},
number = {15},
pages = {1965--1971},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts329},
doi = {10.1093/BIOINFORMATICS/BTS329},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FuTFLZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FengMWLLZ12,
author = {Jianxing Feng and
Clifford A. Meyer and
Qian Wang and
Jun S. Liu and
Xiaole Shirley Liu and
Yong Zhang},
title = {{GFOLD:} a generalized fold change for ranking differentially expressed
genes from RNA-seq data},
journal = {Bioinform.},
volume = {28},
number = {21},
pages = {2782--2788},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts515},
doi = {10.1093/BIOINFORMATICS/BTS515},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/FengMWLLZ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeyerHBL11,
author = {Clifford A. Meyer and
Housheng H. He and
Myles Brown and
Xiaole Shirley Liu},
title = {BINOCh: binding inference from nucleosome occupancy changes},
journal = {Bioinform.},
volume = {27},
number = {13},
pages = {1867--1868},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr279},
doi = {10.1093/BIOINFORMATICS/BTR279},
timestamp = {Tue, 08 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeyerHBL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CaoZWMZCLL11,
author = {Qingyi Cao and
Meng Zhou and
Xujun Wang and
Clifford A. Meyer and
Yong Zhang and
Zhi Chen and
Cheng Li and
Xiaole Shirley Liu},
title = {CaSNP: a database for interrogating copy number alterations of cancer
genome from {SNP} array data},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {968--974},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq997},
doi = {10.1093/NAR/GKQ997},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CaoZWMZCLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShinLML09,
author = {Hyunjin Shin and
Tao Liu and
Arjun K. Manrai and
Xiaole Shirley Liu},
title = {{CEAS:} \emph{cis}-regulatory element annotation system},
journal = {Bioinform.},
volume = {25},
number = {19},
pages = {2605--2606},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp479},
doi = {10.1093/BIOINFORMATICS/BTP479},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShinLML09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SongMLFQL07,
author = {Jun S. Song and
Kaveh Maghsoudi and
Wei Li and
Edward Fox and
John Quackenbush and
Xiaole Shirley Liu},
title = {Microarray blob-defect removal improves array analysis},
journal = {Bioinform.},
volume = {23},
number = {8},
pages = {966--971},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm043},
doi = {10.1093/BIOINFORMATICS/BTM043},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SongMLFQL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/Liu07,
author = {Xiaole Shirley Liu},
title = {Getting Started in Tiling Microarray Analysis},
journal = {PLoS Comput. Biol.},
volume = {3},
number = {10},
year = {2007},
url = {https://doi.org/10.1371/journal.pcbi.0030183},
doi = {10.1371/JOURNAL.PCBI.0030183},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/Liu07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/LiCBL07,
author = {Wei Li and
Jason S. Carroll and
Myles Brown and
Xiaole Shirley Liu},
editor = {Hamid R. Arabnia and
Mary Qu Yang and
Jack Y. Yang},
title = {xMAN: extreme MApping of oligoNucleotides},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2007, Volume II, June 25-28, 2007, Las Vegas Nevada,
{USA}},
pages = {631--637},
publisher = {{CSREA} Press},
year = {2007},
timestamp = {Thu, 03 Nov 2016 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/biocomp/LiCBL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JiLSWL06,
author = {Xuwo Ji and
Wei Li and
Jun Song and
Liping Wei and
Xiaole Shirley Liu},
title = {{CEAS:} \emph{cis}-regulatory element annotation system},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Web-Server-Issue},
pages = {551--554},
year = {2006},
url = {https://doi.org/10.1093/nar/gkl322},
doi = {10.1093/NAR/GKL322},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JiLSWL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HongLZLLW05,
author = {Pengyu Hong and
Xiaole Shirley Liu and
Qing Zhou and
Xin Lu and
Jun S. Liu and
Wing Hung Wong},
title = {A boosting approach for motif modeling using ChIP-chip data},
journal = {Bioinform.},
volume = {21},
number = {11},
pages = {2636--2643},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti402},
doi = {10.1093/BIOINFORMATICS/BTI402},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HongLZLLW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LiML05,
author = {Wei Li and
Clifford A. Meyer and
Xiaole Shirley Liu},
title = {A hidden Markov model for analyzing ChIP-chip experiments on genome
tiling arrays and its application to p53 binding sequences},
booktitle = {Proceedings Thirteenth International Conference on Intelligent Systems
for Molecular Biology 2005, Detroit, MI, USA, 25-29 June 2005},
pages = {274--282},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1046},
doi = {10.1093/BIOINFORMATICS/BTI1046},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/LiML05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiuWBBLL04,
author = {Yueyi Liu and
Liping Wei and
Serafim Batzoglou and
Douglas L. Brutlag and
Jun S. Liu and
Xiaole Shirley Liu},
title = {A suite of web-based programs to search for transcriptional regulatory
motifs},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Web-Server-Issue},
pages = {204--207},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh461},
doi = {10.1093/NAR/GKH461},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiuWBBLL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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