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ORCIDBibTeX records: Christopher J. Langmead
@article{DBLP:journals/qmi/LondonBXVLKCM24,
author = {Charles London and
Douglas Brown and
Wenduan Xu and
Sezen Vatansever and
Christopher J. Langmead and
Dimitri Kartsaklis and
Stephen Clark and
Konstantinos Meichanetzidis},
title = {Peptide binding classification on quantum computers},
journal = {Quantum Mach. Intell.},
volume = {6},
number = {1},
pages = {35},
year = {2024},
url = {https://doi.org/10.1007/s42484-024-00154-3},
doi = {10.1007/S42484-024-00154-3},
timestamp = {Mon, 17 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/qmi/LondonBXVLKCM24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2311-15696,
author = {Charles London and
Douglas Brown and
Wenduan Xu and
Sezen Vatansever and
Christopher James Langmead and
Dimitri Kartsaklis and
Stephen Clark and
Konstantinos Meichanetzidis},
title = {Peptide Binding Classification on Quantum Computers},
journal = {CoRR},
volume = {abs/2311.15696},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2311.15696},
doi = {10.48550/ARXIV.2311.15696},
eprinttype = {arXiv},
eprint = {2311.15696},
timestamp = {Wed, 29 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2311-15696.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2204-05477,
author = {Thesath Nanayakkara and
Gilles Clermont and
Christopher James Langmead and
David Swigon},
title = {Deep Normed Embeddings for Patient Representation},
journal = {CoRR},
volume = {abs/2204.05477},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2204.05477},
doi = {10.48550/ARXIV.2204.05477},
eprinttype = {arXiv},
eprint = {2204.05477},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2204-05477.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/almob/FrisbyL21,
author = {Trevor S. Frisby and
Christopher James Langmead},
title = {Bayesian optimization with evolutionary and structure-based regularization
for directed protein evolution},
journal = {Algorithms Mol. Biol.},
volume = {16},
number = {1},
pages = {13},
year = {2021},
url = {https://doi.org/10.1186/s13015-021-00195-4},
doi = {10.1186/S13015-021-00195-4},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/almob/FrisbyL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FrisbyGL21,
author = {Trevor S. Frisby and
Zhiyun Gong and
Christopher James Langmead},
title = {Asynchronous parallel Bayesian optimization for AI-driven cloud laboratories},
journal = {Bioinform.},
volume = {37},
number = {Supplement},
pages = {451--459},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab291},
doi = {10.1093/BIOINFORMATICS/BTAB291},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FrisbyGL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/FrisbyBMHKL21,
author = {Trevor S. Frisby and
Shawn J. Baker and
Guillaume Mar{\c{c}}ais and
Quang Minh Hoang and
Carl Kingsford and
Christopher J. Langmead},
title = {Harvestman: a framework for hierarchical feature learning and selection
from whole genome sequencing data},
journal = {{BMC} Bioinform.},
volume = {22},
number = {1},
pages = {174},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-04096-6},
doi = {10.1186/S12859-021-04096-6},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FrisbyBMHKL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2101-08477,
author = {Thesath Nanayakkara and
Gilles Clermont and
Christopher James Langmead and
David Swigon},
title = {Unifying Cardiovascular Modelling with Deep Reinforcement Learning
for Uncertainty Aware Control of Sepsis Treatment},
journal = {CoRR},
volume = {abs/2101.08477},
year = {2021},
url = {https://arxiv.org/abs/2101.08477},
eprinttype = {arXiv},
eprint = {2101.08477},
timestamp = {Sat, 30 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2101-08477.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/FrisbyL20,
author = {Trevor S. Frisby and
Christopher J. Langmead},
editor = {Carl Kingsford and
Nadia Pisanti},
title = {Fold Family-Regularized Bayesian Optimization for Directed Protein
Evolution},
booktitle = {20th International Workshop on Algorithms in Bioinformatics, {WABI}
2020, September 7-9, 2020, Pisa, Italy (Virtual Conference)},
series = {LIPIcs},
volume = {172},
pages = {18:1--18:17},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2020},
url = {https://doi.org/10.4230/LIPIcs.WABI.2020.18},
doi = {10.4230/LIPICS.WABI.2020.18},
timestamp = {Wed, 21 Aug 2024 22:46:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/FrisbyL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HussainLMDVJ15,
author = {Faraz Hussain and
Christopher J. Langmead and
Qi Mi and
Joyeeta Dutta{-}Moscato and
Yoram Vodovotz and
Sumit Kumar Jha},
title = {Automated parameter estimation for biological models using Bayesian
statistical model checking},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S17}},
pages = {S8},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-s17-s8},
doi = {10.1186/1471-2105-16-S17-S8},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HussainLMDVJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KamisettyGLB15,
author = {Hetunandan Kamisetty and
Bornika Ghosh and
Christopher James Langmead and
Chris Bailey{-}Kellogg},
title = {Learning Sequence Determinants of Protein: Protein Interaction Specificity
with Sparse Graphical Models},
journal = {J. Comput. Biol.},
volume = {22},
number = {6},
pages = {474--486},
year = {2015},
url = {https://doi.org/10.1089/cmb.2014.0289},
doi = {10.1089/CMB.2014.0289},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/KamisettyGLB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/HussainJJL14,
author = {Faraz Hussain and
Sumit Kumar Jha and
Susmit Jha and
Christopher James Langmead},
title = {Parameter discovery in stochastic biological models using simulated
annealing and statistical model checking},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {10},
number = {4/5},
pages = {519--539},
year = {2014},
url = {https://doi.org/10.1504/IJBRA.2014.062998},
doi = {10.1504/IJBRA.2014.062998},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/HussainJJL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/GhoshHJLJ14,
author = {Arup Kumar Ghosh and
Faraz Hussain and
Susmit Jha and
Christopher James Langmead and
Sumit Kumar Jha},
title = {Discovering rare behaviours in stochastic differential equations using
decision procedures: applications to a minimal cell cycle model},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {10},
number = {4/5},
pages = {540--558},
year = {2014},
url = {https://doi.org/10.1504/IJBRA.2014.062999},
doi = {10.1504/IJBRA.2014.062999},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/GhoshHJLJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/HussainLMDVJ14,
author = {Faraz Hussain and
Christopher James Langmead and
Qi Mi and
Joyeeta Dutta{-}Moscato and
Yoram Vodovotz and
Sumit Kumar Jha},
title = {Parameter discovery for stochastic computational models in systems
biology using Bayesian model checking},
booktitle = {{IEEE} 4th International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2014, Miami, FL, USA, June 2-4, 2014},
pages = {1--2},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/ICCABS.2014.6863925},
doi = {10.1109/ICCABS.2014.6863925},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/HussainLMDVJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KamisettyGLB14,
author = {Hetunandan Kamisetty and
Bornika Ghosh and
Christopher James Langmead and
Chris Bailey{-}Kellogg},
editor = {Roded Sharan},
title = {Learning Sequence Determinants of Protein: Protein Interaction Specificity
with Sparse Graphical Models},
booktitle = {Research in Computational Molecular Biology - 18th Annual International
Conference, {RECOMB} 2014, Pittsburgh, PA, USA, April 2-5, 2014, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8394},
pages = {129--143},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-05269-4\_10},
doi = {10.1007/978-3-319-05269-4\_10},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KamisettyGLB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/JhaL12,
author = {Sumit Kumar Jha and
Christopher James Langmead},
title = {Exploring behaviors of stochastic differential equation models of
biological systems using change of measures},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-5}},
pages = {S8},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S5-S8},
doi = {10.1186/1471-2105-13-S5-S8},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/JhaL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/RazavianKL12,
author = {Narges Razavian and
Hetunandan Kamisetty and
Christopher James Langmead},
title = {Learning generative models of molecular dynamics},
journal = {{BMC} Genom.},
volume = {13},
number = {{S-1}},
pages = {S5},
year = {2012},
url = {https://doi.org/10.1186/1471-2164-13-S1-S5},
doi = {10.1186/1471-2164-13-S1-S5},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcgenomics/RazavianKL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijbra/JhaDLJS12,
author = {Sumit Kumar Jha and
Raj Gautam Dutta and
Christopher James Langmead and
Susmit Jha and
Emily Sassano},
title = {Synthesis of insulin pump controllers from safety specifications using
Bayesian model validation},
journal = {Int. J. Bioinform. Res. Appl.},
volume = {8},
number = {3/4},
pages = {263--285},
year = {2012},
url = {https://doi.org/10.1504/IJBRA.2012.048964},
doi = {10.1504/IJBRA.2012.048964},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijbra/JhaDLJS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/GhoshHJLJ12,
author = {Arup K. Ghosh and
Faraz Hussain and
Sumit Kumar Jha and
Christopher James Langmead and
Susmit Jha},
editor = {Sorin Istrail and
Ion I. Mandoiu and
Mihai Pop and
Sanguthevar Rajasekaran and
John L. Spouge},
title = {Decision procedure based discovery of rare behaviors in Stochastic
Differential Equation models of biological systems},
booktitle = {{IEEE} 2nd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2012, Las Vegas, NV, USA, February
23-25, 2012},
pages = {1--6},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/ICCABS.2012.6182635},
doi = {10.1109/ICCABS.2012.6182635},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/GhoshHJLJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/HussainDJLJ12,
author = {Faraz Hussain and
Raj Gautam Dutta and
Sumit Kumar Jha and
Christopher James Langmead and
Susmit Jha},
editor = {Sorin Istrail and
Ion I. Mandoiu and
Mihai Pop and
Sanguthevar Rajasekaran and
John L. Spouge},
title = {Parameter discovery for stochastic biological models against temporal
behavioral specifications using an {SPRT} based Metric for simulated
annealing},
booktitle = {{IEEE} 2nd International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2012, Las Vegas, NV, USA, February
23-25, 2012},
pages = {1--6},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/ICCABS.2012.6182640},
doi = {10.1109/ICCABS.2012.6182640},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/HussainDJLJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcs/JhaL11,
author = {Sumit Kumar Jha and
Christopher James Langmead},
title = {Synthesis and infeasibility analysis for stochastic models of biochemical
systems using statistical model checking and abstraction refinement},
journal = {Theor. Comput. Sci.},
volume = {412},
number = {21},
pages = {2162--2187},
year = {2011},
url = {https://doi.org/10.1016/j.tcs.2011.01.012},
doi = {10.1016/J.TCS.2011.01.012},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcs/JhaL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/date/JhaLMR11,
author = {Sumit Kumar Jha and
Christopher James Langmead and
Swarup Mohalik and
S. Ramesh},
title = {When to stop verification?: Statistical trade-off between expected
loss and simulation cost},
booktitle = {Design, Automation and Test in Europe, {DATE} 2011, Grenoble, France,
March 14-18, 2011},
pages = {1309--1314},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/DATE.2011.5763210},
doi = {10.1109/DATE.2011.5763210},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/date/JhaLMR11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/JhaL11,
author = {Sumit Kumar Jha and
Christopher James Langmead},
editor = {Ion I. Mandoiu and
Satoru Miyano and
Teresa M. Przytycka and
Sanguthevar Rajasekaran},
title = {Exploring behaviors of {SDE} models of biological systems using change
of measures},
booktitle = {{IEEE} 1st International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5,
2011},
pages = {111--116},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICCABS.2011.5729862},
doi = {10.1109/ICCABS.2011.5729862},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/JhaL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccabs/JhaL11a,
author = {Sumit Kumar Jha and
Christopher James Langmead},
editor = {Ion I. Mandoiu and
Satoru Miyano and
Teresa M. Przytycka and
Sanguthevar Rajasekaran},
title = {Poster: Synthesis of biochemical models},
booktitle = {{IEEE} 1st International Conference on Computational Advances in Bio
and Medical Sciences, {ICCABS} 2011, Orlando, FL, USA, February 3-5,
2011},
pages = {248},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/ICCABS.2011.5729901},
doi = {10.1109/ICCABS.2011.5729901},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccabs/JhaL11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/KamisettyXL11,
author = {Hetunandan Kamisetty and
Eric P. Xing and
Christopher James Langmead},
editor = {Lise Getoor and
Tobias Scheffer},
title = {Approximating Correlated Equilibria using Relaxations on the Marginal
Polytope},
booktitle = {Proceedings of the 28th International Conference on Machine Learning,
{ICML} 2011, Bellevue, Washington, USA, June 28 - July 2, 2011},
pages = {1153--1160},
publisher = {Omnipress},
year = {2011},
url = {https://icml.cc/2011/papers/594\_icmlpaper.pdf},
timestamp = {Wed, 03 Apr 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/KamisettyXL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/RamanathanAKL10,
author = {Arvind Ramanathan and
Pratul K. Agarwal and
Maria G. Kurnikova and
Christopher James Langmead},
title = {An Online Approach for Mining Collective Behaviors from Molecular
Dynamics Simulations},
journal = {J. Comput. Biol.},
volume = {17},
number = {3},
pages = {309--324},
year = {2010},
url = {https://doi.org/10.1089/cmb.2009.0167},
doi = {10.1089/CMB.2009.0167},
timestamp = {Thu, 05 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/RamanathanAKL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/DonzeCL10,
author = {Alexandre Donz{\'{e}} and
Gilles Clermont and
Christopher James Langmead},
title = {Parameter Synthesis in Nonlinear Dynamical Systems: Application to
Systems Biology},
journal = {J. Comput. Biol.},
volume = {17},
number = {3},
pages = {325--336},
year = {2010},
url = {https://doi.org/10.1089/cmb.2009.0172},
doi = {10.1089/CMB.2009.0172},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/DonzeCL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sysose/MoitraYTSLK10,
author = {Subhodeep Moitra and
Naveena Yanamala and
{\"{O}}znur Tastan and
Irtisha Singh and
Christopher James Langmead and
Judith Klein{-}Seetharaman},
title = {Analogies between structural and systems biology and systems-of-systems
engineering in dynamic environments},
booktitle = {5th International Conference on System of Systems Engineering, SoSE
2010, Loughborough, UK, 22-24 June, 2010},
pages = {1--7},
publisher = {{IEEE}},
year = {2010},
url = {https://doi.org/10.1109/SYSOSE.2010.5544104},
doi = {10.1109/SYSOSE.2010.5544104},
timestamp = {Sat, 20 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sysose/MoitraYTSLK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/LangmeadJ09,
author = {Christopher James Langmead and
Sumit Kumar Jha},
title = {Symbolic Approaches for Finding Control Strategies in Boolean Networks},
journal = {J. Bioinform. Comput. Biol.},
volume = {7},
number = {2},
pages = {323--338},
year = {2009},
url = {https://doi.org/10.1142/S0219720009004084},
doi = {10.1142/S0219720009004084},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/LangmeadJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/JhaCLLPZ09,
author = {Sumit Kumar Jha and
Edmund M. Clarke and
Christopher James Langmead and
Axel Legay and
Andr{\'{e}} Platzer and
Paolo Zuliani},
editor = {Pierpaolo Degano and
Roberto Gorrieri},
title = {A Bayesian Approach to Model Checking Biological Systems},
booktitle = {Computational Methods in Systems Biology, 7th International Conference,
{CMSB} 2009, Bologna, Italy, August 31-September 1, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5688},
pages = {218--234},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03845-7\_15},
doi = {10.1007/978-3-642-03845-7\_15},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/JhaCLLPZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/KamisettyL09,
author = {Hetunandan Kamisetty and
Christopher James Langmead},
editor = {Andrea Pohoreckyj Danyluk and
L{\'{e}}on Bottou and
Michael L. Littman},
title = {A Bayesian approach to protein model quality assessment},
booktitle = {Proceedings of the 26th Annual International Conference on Machine
Learning, {ICML} 2009, Montreal, Quebec, Canada, June 14-18, 2009},
series = {{ACM} International Conference Proceeding Series},
volume = {382},
pages = {481--488},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1553374.1553437},
doi = {10.1145/1553374.1553437},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icml/KamisettyL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RamanathanAKL09,
author = {Arvind Ramanathan and
Pratul K. Agarwal and
Maria G. Kurnikova and
Christopher James Langmead},
editor = {Serafim Batzoglou},
title = {An Online Approach for Mining Collective Behaviors from Molecular
Dynamics Simulations},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {138--154},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_10},
doi = {10.1007/978-3-642-02008-7\_10},
timestamp = {Thu, 05 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/RamanathanAKL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/DonzeCLL09,
author = {Alexandre Donz{\'{e}} and
Gilles Clermont and
Axel Legay and
Christopher James Langmead},
editor = {Serafim Batzoglou},
title = {Parameter Synthesis in Nonlinear Dynamical Systems: Application to
Systems Biology},
booktitle = {Research in Computational Molecular Biology, 13th Annual International
Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5541},
pages = {155--169},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02008-7\_11},
doi = {10.1007/978-3-642-02008-7\_11},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/DonzeCLL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/KamisettyXL08,
author = {Hetunandan Kamisetty and
Eric P. Xing and
Christopher James Langmead},
title = {Free Energy Estimates of All-Atom Protein Structures Using Generalized
Belief Propagation},
journal = {J. Comput. Biol.},
volume = {15},
number = {7},
pages = {755--766},
year = {2008},
url = {https://doi.org/10.1089/cmb.2007.0131},
doi = {10.1089/CMB.2007.0131},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/KamisettyXL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/LangmeadJ08,
author = {Christopher James Langmead and
Sumit Kumar Jha},
editor = {Alvis Brazma and
Satoru Miyano and
Tatsuya Akutsu},
title = {Symbolic Approaches for Finding Control Strategies in Boolean Networks},
booktitle = {Proceedings of the 6th Asia-Pacific Bioinformatics Conference, {APBC}
2008, 14-17 January 2008, Kyoto, Japan},
series = {Advances in Bioinformatics and Computational Biology},
volume = {6},
pages = {307--320},
publisher = {Imperial College Press},
year = {2008},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2008/apbc051a.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/LangmeadJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cmsb/ClarkeFLHJL08,
author = {Edmund M. Clarke and
James R. Faeder and
Christopher James Langmead and
Leonard A. Harris and
Sumit Kumar Jha and
Axel Legay},
editor = {Monika Heiner and
Adelinde M. Uhrmacher},
title = {Statistical Model Checking in BioLab: Applications to the Automated
Analysis of T-Cell Receptor Signaling Pathway},
booktitle = {Computational Methods in Systems Biology, 6th International Conference,
{CMSB} 2008, Rostock, Germany, October 12-15, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5307},
pages = {231--250},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-88562-7\_18},
doi = {10.1007/978-3-540-88562-7\_18},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cmsb/ClarkeFLHJL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KamisettyXL07,
author = {Hetunandan Kamisetty and
Eric P. Xing and
Christopher James Langmead},
editor = {Terence P. Speed and
Haiyan Huang},
title = {Free Energy Estimates of All-Atom Protein Structures Using Generalized
Belief Propagation},
booktitle = {Research in Computational Molecular Biology, 11th Annual International
Conference, {RECOMB} 2007, Oakland, CA, USA, April 21-25, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4453},
pages = {366--380},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-71681-5\_26},
doi = {10.1007/978-3-540-71681-5\_26},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KamisettyXL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/LangmeadJ07,
author = {Christopher James Langmead and
Sumit Kumar Jha},
editor = {Raffaele Giancarlo and
Sridhar Hannenhalli},
title = {Predicting Protein Folding Kinetics Via Temporal Logic Model Checking},
booktitle = {Algorithms in Bioinformatics, 7th International Workshop, {WABI} 2007,
Philadelphia, PA, USA, September 8-9, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4645},
pages = {252--264},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74126-8\_24},
doi = {10.1007/978-3-540-74126-8\_24},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wabi/LangmeadJ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/Langmead06,
author = {Christopher James Langmead},
editor = {Tao Jiang and
Ueng{-}Cheng Yang and
Yi{-}Ping Phoebe Chen and
Limsoon Wong},
title = {A Randomized Algorithm for Learning Mahalanobis Metrics: Application
to Classification and Regression of Biological Data},
booktitle = {Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February
2006, Taipei, Taiwan},
pages = {217--226},
publisher = {Imperial College Press, London},
year = {2006},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2006/209.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/Langmead06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apbc/ArunL06,
author = {K. Arun and
Christopher James Langmead},
editor = {Tao Jiang and
Ueng{-}Cheng Yang and
Yi{-}Ping Phoebe Chen and
Limsoon Wong},
title = {Structure-Based Chemical Shift Prediction Using Random Forests Non-Linear
Regression},
booktitle = {Proceedings of 4th Asia-Pacific Bioinformatics Conference. 13-16 February
2006, Taipei, Taiwan},
pages = {317--326},
publisher = {Imperial College Press, London},
year = {2006},
url = {http://www.comp.nus.edu.sg/\%7Ewongls/psZ/apbc2006/238.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apbc/ArunL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijrr/YanLD05,
author = {Anthony K. Yan and
Christopher James Langmead and
Bruce Randall Donald},
title = {A Probability-Based Similarity Measure for Saupe Alignment Tensors
with Applications to Residual Dipolar Couplings in {NMR} Structural
Biology},
journal = {Int. J. Robotics Res.},
volume = {24},
number = {2-3},
pages = {165--182},
year = {2005},
url = {https://doi.org/10.1177/0278364905050351},
doi = {10.1177/0278364905050351},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijrr/YanLD05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LangmeadYLWD04,
author = {Christopher James Langmead and
Anthony K. Yan and
Ryan H. Lilien and
Lincong Wang and
Bruce Randall Donald},
title = {A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated
{NMR} Resonance Assignments},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {277--298},
year = {2004},
url = {https://doi.org/10.1089/1066527041410436},
doi = {10.1089/1066527041410436},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/LangmeadYLWD04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/LangmeadD04,
author = {Christopher James Langmead and
Bruce Randall Donald},
title = {High-Throughput 3D Structural Homology Detection via {NMR} Resonance
Assignment},
booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
pages = {278--289},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CSB.2004.1332441},
doi = {10.1109/CSB.2004.1332441},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/LangmeadD04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/ArunL04,
author = {K. Arun and
Christopher James Langmead},
title = {Large-Scale Testing of Chemical Shift Prediction Algorithms and Improved
Machine Learning-Based Approaches to Shift Prediction},
booktitle = {3rd International {IEEE} Computer Society Computational Systems Bioinformatics
Conference, {CSB} 2004, Stanford, CA, USA, August 16-19, 2004},
pages = {712--713},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CSB.2004.1332556},
doi = {10.1109/CSB.2004.1332556},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/ArunL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LangmeadYMD03,
author = {Christopher James Langmead and
Anthony K. Yan and
C. Robertson McClung and
Bruce Randall Donald},
title = {Phase-Independent Rhythmic Analysis of Genome-Wide Expression Patterns},
journal = {J. Comput. Biol.},
volume = {10},
number = {3/4},
pages = {521--536},
year = {2003},
url = {https://doi.org/10.1089/10665270360688165},
doi = {10.1089/10665270360688165},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/LangmeadYMD03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/LangmeadD03,
author = {Christopher James Langmead and
Bruce Randall Donald},
title = {3D Structural Homology Detection via Unassigned Residual Dipolar Couplings},
booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
Stanford, CA, USA, August 11-14, 2003},
pages = {209--219},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CSB.2003.1227320},
doi = {10.1109/CSB.2003.1227320},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/LangmeadD03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LangmeadYLWD03,
author = {Christopher James Langmead and
Anthony K. Yan and
Ryan H. Lilien and
Lincong Wang and
Bruce Randall Donald},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Large a polynomial-time nuclear vector replacement algorithm for automated
{NMR} resonance assignments},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {176--187},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640098},
doi = {10.1145/640075.640098},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LangmeadYLWD03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/LangmeadMD02,
author = {Christopher James Langmead and
C. Robertson McClung and
Bruce Randall Donald},
title = {A Maximum Entropy Algorithm for Rhythmic Analysis of Genome-Wide Expression
Patterns},
booktitle = {1st {IEEE} Computer Society Bioinformatics Conference, {CSB} 2002,
Stanford, CA, USA, August 14-16, 2002},
pages = {237--245},
publisher = {{IEEE} Computer Society},
year = {2002},
url = {https://doi.org/10.1109/CSB.2002.1039346},
doi = {10.1109/CSB.2002.1039346},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/LangmeadMD02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LangmeadYMD02,
author = {Christopher James Langmead and
Anthony K. Yan and
C. Robertson McClung and
Bruce Randall Donald},
editor = {Gene Myers and
Sridhar Hannenhalli and
David Sankoff and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {Phase-independent rhythmic analysis of genome-wide expression patterns},
booktitle = {Proceedings of the Sixth Annual International Conference on Computational
Biology, {RECOMB} 2002, Washington, DC, USA, April 18-21, 2002},
pages = {205--215},
publisher = {{ACM}},
year = {2002},
url = {https://doi.org/10.1145/565196.565223},
doi = {10.1145/565196.565223},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LangmeadYMD02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LangmeadD01,
author = {Christopher James Langmead and
Bruce Randall Donald},
editor = {Thomas Lengauer},
title = {Extracting structural information using time-frequency analysis of
protein {NMR} data},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {164--175},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369191},
doi = {10.1145/369133.369191},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LangmeadD01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmc/Langmead95,
author = {Christopher James Langmead},
title = {Sound Analysis, Comparison and Modification Based on Perceptual Model
of Timbre},
booktitle = {Proceedings of the 1995 International Computer Music Conference, {ICMC}
1995, Banff, AB, Canada, September 3-7, 1995},
publisher = {Michigan Publishing},
year = {1995},
url = {https://hdl.handle.net/2027/spo.bbp2372.1995.134},
timestamp = {Wed, 04 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icmc/Langmead95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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