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ORCIDBibTeX records: Christopher J. Lanczycki
@article{DBLP:journals/nar/WangCDGGLMSTYYZZLM23,
author = {Jiyao Wang and
Farideh Chitsaz and
Myra K. Derbyshire and
Noreen R. Gonzales and
Marc Gwadz and
Shennan Lu and
Gabriele H. Marchler and
James S. Song and
Narmada Thanki and
Roxanne A. Yamashita and
Mingzhang Yang and
Dachuan Zhang and
Chanjuan Zheng and
Christopher J. Lanczycki and
Aron Marchler{-}Bauer},
title = {The conserved domain database in 2023},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{D1}},
pages = {384--388},
year = {2023},
url = {https://doi.org/10.1093/nar/gkac1096},
doi = {10.1093/NAR/GKAC1096},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WangCDGGLMSTYYZZLM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SayersBBCCCCFKK22,
author = {Eric W. Sayers and
Evan E. Bolton and
J. Rodney Brister and
Kathi Canese and
Jessica Chan and
Donald C. Comeau and
Ryan Connor and
Kathryn Funk and
Chris Kelly and
Sunghwan Kim and
Tom Madej and
Aron Marchler{-}Bauer and
Christopher J. Lanczycki and
Stacy Lathrop and
Zhiyong Lu and
Fran{\c{c}}oise Thibaud{-}Nissen and
Terence D. Murphy and
Lon Phan and
Yuri Skripchenko and
Tony Tse and
Jiyao Wang and
Rebecca Williams and
Barton W. Trawick and
Kim D. Pruitt and
Stephen T. Sherry},
title = {Database resources of the national center for biotechnology information},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {20--26},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1112},
doi = {10.1093/NAR/GKAB1112},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/SayersBBCCCCFKK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiOHDCBCCDDGGLS21,
author = {Wenjun Li and
Kathleen O'Neill and
Daniel H. Haft and
Michael DiCuccio and
Vyacheslav Chetvernin and
Azat Badretdin and
George Coulouris and
Farideh Chitsaz and
Myra K. Derbyshire and
A. Scott Durkin and
Noreen R. Gonzales and
Marc Gwadz and
Christopher J. Lanczycki and
James S. Song and
Narmada Thanki and
Jiyao Wang and
Roxanne A. Yamashita and
Mingzhang Yang and
Chanjuan Zheng and
Aron Marchler{-}Bauer and
Fran{\c{c}}oise Thibaud{-}Nissen},
title = {RefSeq: expanding the Prokaryotic Genome Annotation Pipeline reach
with protein family model curation},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D1020--D1028},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1105},
doi = {10.1093/NAR/GKAA1105},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LiOHDCBCCDDGGLS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/NeuwaldLHM20,
author = {Andrew F. Neuwald and
Christopher J. Lanczycki and
Theresa K. Hodges and
Aron Marchler{-}Bauer},
title = {Obtaining extremely large and accurate protein multiple sequence alignments
from curated hierarchical alignments},
journal = {Database J. Biol. Databases Curation},
volume = {2020},
year = {2020},
url = {https://doi.org/10.1093/database/baaa042},
doi = {10.1093/DATABASE/BAAA042},
timestamp = {Sun, 11 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/NeuwaldLHM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangYZLGMPWLMWB20,
author = {Jiyao Wang and
Philippe Youkharibache and
Dachuan Zhang and
Christopher J. Lanczycki and
Renata C. Geer and
Thomas Madej and
Lon Phan and
Minghong Ward and
Shennan Lu and
Gabriele H. Marchler and
Yanli Wang and
Stephen H. Bryant and
Lewis Y. Geer and
Aron Marchler{-}Bauer},
title = {iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations
of biomolecular structures},
journal = {Bioinform.},
volume = {36},
number = {1},
pages = {131--135},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz502},
doi = {10.1093/BIOINFORMATICS/BTZ502},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangYZLGMPWLMWB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LuWCDGGGHMSTYYZ20,
author = {Shennan Lu and
Jiyao Wang and
Farideh Chitsaz and
Myra K. Derbyshire and
Renata C. Geer and
Noreen R. Gonzales and
Marc Gwadz and
David I. Hurwitz and
Gabriele H. Marchler and
James S. Song and
Narmada Thanki and
Roxanne A. Yamashita and
Mingzhang Yang and
Dachuan Zhang and
Chanjuan Zheng and
Christopher J. Lanczycki and
Aron Marchler{-}Bauer},
title = {{CDD/SPARCLE:} the conserved domain database in 2020},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D265--D268},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz991},
doi = {10.1093/NAR/GKZ991},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LuWCDGGGHMSTYYZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Marchler-BauerY17,
author = {Aron Marchler{-}Bauer and
Bo Yu and
Lianyi Han and
Jane He and
Christopher J. Lanczycki and
Shennan Lu and
Farideh Chitsaz and
Myra K. Derbyshire and
Renata C. Geer and
Noreen R. Gonzales and
Marc Gwadz and
David I. Hurwitz and
Fu Lu and
Gabriele H. Marchler and
James S. Song and
Narmada Thanki and
Zhouxi Wang and
Roxanne A. Yamashita and
Dachuan Zhang and
Chanjuan Zheng and
Lewis Y. Geer and
Stephen H. Bryant},
title = {{CDD/SPARCLE:} functional classification of proteins via subfamily
domain architectures},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D200--D203},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1129},
doi = {10.1093/NAR/GKW1129},
timestamp = {Tue, 26 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Marchler-BauerY17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Marchler-BauerDGLCGGHGHLLMSTWYZZB15,
author = {Aron Marchler{-}Bauer and
Myra K. Derbyshire and
Noreen R. Gonzales and
Shennan Lu and
Farideh Chitsaz and
Lewis Y. Geer and
Renata C. Geer and
Jane He and
Marc Gwadz and
David I. Hurwitz and
Christopher J. Lanczycki and
Fu Lu and
Gabriele H. Marchler and
James S. Song and
Narmada Thanki and
Zhouxi Wang and
Roxanne A. Yamashita and
Dachuan Zhang and
Chanjuan Zheng and
Stephen H. Bryant},
title = {{CDD:} NCBI's conserved domain database},
journal = {Nucleic Acids Res.},
volume = {43},
number = {Database-Issue},
pages = {222--226},
year = {2015},
url = {https://doi.org/10.1093/nar/gku1221},
doi = {10.1093/NAR/GKU1221},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Marchler-BauerDGLCGGHGHLLMSTWYZZB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MadejLZTGMB14,
author = {Thomas Madej and
Christopher J. Lanczycki and
Dachuan Zhang and
Paul A. Thiessen and
Renata C. Geer and
Aron Marchler{-}Bauer and
Stephen H. Bryant},
title = {{MMDB} and {VAST+:} tracking structural similarities between macromolecular
complexes},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {297--303},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1208},
doi = {10.1093/NAR/GKT1208},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MadejLZTGMB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Marchler-BauerZCDGGGGHLLLMSTYZB13,
author = {Aron Marchler{-}Bauer and
Chanjuan Zheng and
Farideh Chitsaz and
Myra K. Derbyshire and
Lewis Y. Geer and
Renata C. Geer and
Noreen R. Gonzales and
Marc Gwadz and
David I. Hurwitz and
Christopher J. Lanczycki and
Fu Lu and
Shennan Lu and
Gabriele H. Marchler and
James S. Song and
Narmada Thanki and
Roxanne A. Yamashita and
Dachuan Zhang and
Stephen H. Bryant},
title = {{CDD:} conserved domains and protein three-dimensional structure},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {348--352},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1243},
doi = {10.1093/NAR/GKS1243},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Marchler-BauerZCDGGGGHLLLMSTYZB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/DerbyshireLBM12,
author = {Myra K. Derbyshire and
Christopher J. Lanczycki and
Stephen H. Bryant and
Aron Marchler{-}Bauer},
title = {Annotation of functional sites with the Conserved Domain Database},
journal = {Database J. Biol. Databases Curation},
volume = {2012},
year = {2012},
url = {https://doi.org/10.1093/database/bar058},
doi = {10.1093/DATABASE/BAR058},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/DerbyshireLBM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NeuwaldLM12,
author = {Andrew F. Neuwald and
Christopher J. Lanczycki and
Aron Marchler{-}Bauer},
title = {Automated hierarchical classification of protein domain subfamilies
based on functionally-divergent residue signatures},
journal = {{BMC} Bioinform.},
volume = {13},
pages = {144},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-144},
doi = {10.1186/1471-2105-13-144},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NeuwaldLM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MadejAFGGLLLMPCTWZB12,
author = {Thomas Madej and
Kenneth J. Addess and
Jessica H. Fong and
Lewis Y. Geer and
Renata C. Geer and
Christopher J. Lanczycki and
Chunlei Liu and
Shennan Lu and
Aron Marchler{-}Bauer and
Anna R. Panchenko and
Jie Chen and
Paul A. Thiessen and
Yanli Wang and
Dachuan Zhang and
Stephen H. Bryant},
title = {{MMDB:} 3D structures and macromolecular interactions},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {461--464},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr1162},
doi = {10.1093/NAR/GKR1162},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MadejAFGGLLLMPCTWZB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChakrabortyMLPC12,
author = {Abhijit Chakraborty and
Sapan Mandloi and
Christopher J. Lanczycki and
Anna R. Panchenko and
Saikat Chakrabarti},
title = {{SPEER-SERVER:} a web server for prediction of protein specificity
determining sites},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Web-Server-Issue},
pages = {242--248},
year = {2012},
url = {https://doi.org/10.1093/nar/gks559},
doi = {10.1093/NAR/GKS559},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChakrabortyMLPC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Marchler-BauerLACDDFGGGGHJKLLMMORSTYZZZB11,
author = {Aron Marchler{-}Bauer and
Shennan Lu and
John B. Anderson and
Farideh Chitsaz and
Myra K. Derbyshire and
Carol DeWeese{-}Scott and
Jessica H. Fong and
Lewis Y. Geer and
Renata C. Geer and
Noreen R. Gonzales and
Marc Gwadz and
David I. Hurwitz and
John D. Jackson and
Zhaoxi Ke and
Christopher J. Lanczycki and
Fu Lu and
Gabriele H. Marchler and
Mikhail Mullokandov and
Marina V. Omelchenko and
Cynthia L. Robertson and
James S. Song and
Narmada Thanki and
Roxanne A. Yamashita and
Dachuan Zhang and
Naigong Zhang and
Chanjuan Zheng and
Stephen H. Bryant},
title = {{CDD:} a Conserved Domain Database for the functional annotation of
proteins},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {225--229},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1189},
doi = {10.1093/NAR/GKQ1189},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Marchler-BauerLACDDFGGGGHJKLLMMORSTYZZZB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChakrabartiLPPTB10,
author = {Saikat Chakrabarti and
Christopher J. Lanczycki and
Anna R. Panchenko and
Teresa M. Przytycka and
Paul A. Thiessen and
Stephen H. Bryant},
title = {State of the art: refinement of multiple sequence alignments},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {3},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-3},
doi = {10.1186/1471-2105-11-3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChakrabartiLPPTB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Marchler-BauerACDDFGGGGHHJKLLLLLMMSTTYZZB09,
author = {Aron Marchler{-}Bauer and
John B. Anderson and
Farideh Chitsaz and
Myra K. Derbyshire and
Carol DeWeese{-}Scott and
Jessica H. Fong and
Lewis Y. Geer and
Renata C. Geer and
Noreen R. Gonzales and
Marc Gwadz and
Siqian He and
David I. Hurwitz and
John D. Jackson and
Zhaoxi Ke and
Christopher J. Lanczycki and
Cynthia A. Liebert and
Chunlei Liu and
Fu Lu and
Shennan Lu and
Gabriele H. Marchler and
Mikhail Mullokandov and
James S. Song and
Asba Tasneem and
Narmada Thanki and
Roxanne A. Yamashita and
Dachuan Zhang and
Naigong Zhang and
Stephen H. Bryant},
title = {{CDD:} specific functional annotation with the Conserved Domain Database},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {205--210},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn845},
doi = {10.1093/NAR/GKN845},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Marchler-BauerACDDFGGGGHHJKLLLLLMMSTTYZZB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Marchler-BauerADDGGHHHJKKLLLLLMMSTYYZB07,
author = {Aron Marchler{-}Bauer and
John B. Anderson and
Myra K. Derbyshire and
Carol DeWeese{-}Scott and
Noreen R. Gonzales and
Marc Gwadz and
Luning Hao and
Siqian He and
David I. Hurwitz and
John D. Jackson and
Zhaoxi Ke and
Dmitri M. Krylov and
Christopher J. Lanczycki and
Cynthia A. Liebert and
Chunlei Liu and
Fu Lu and
Shennan Lu and
Gabriele H. Marchler and
Mikhail Mullokandov and
James S. Song and
Narmada Thanki and
Roxanne A. Yamashita and
Jodie J. Yin and
Dachuan Zhang and
Stephen H. Bryant},
title = {{CDD:} a conserved domain database for interactive domain family analysis},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {237--240},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl951},
doi = {10.1093/NAR/GKL951},
timestamp = {Fri, 18 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Marchler-BauerADDGGHHHJKKLLLLLMMSTYYZB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChakrabartiLPPTB06,
author = {Saikat Chakrabarti and
Christopher J. Lanczycki and
Anna R. Panchenko and
Teresa M. Przytycka and
Paul A. Thiessen and
Stephen H. Bryant},
title = {State of the art: refinement of multiple sequence alignments},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {499},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-499},
doi = {10.1186/1471-2105-7-499},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChakrabartiLPPTB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Marchler-BauerACDGGHHJKLLLLMMSSSTYYZB05,
author = {Aron Marchler{-}Bauer and
John B. Anderson and
Praveen F. Cherukuri and
Carol DeWeese{-}Scott and
Lewis Y. Geer and
Marc Gwadz and
Siqian He and
David I. Hurwitz and
John D. Jackson and
Zhaoxi Ke and
Christopher J. Lanczycki and
Cynthia A. Liebert and
Chunlei Liu and
Fu Lu and
Gabriele H. Marchler and
Mikhail Mullokandov and
Benjamin A. Shoemaker and
Vahan Simonyan and
James S. Song and
Paul A. Thiessen and
Roxanne A. Yamashita and
Jodie J. Yin and
Dachuan Zhang and
Stephen H. Bryant},
title = {{CDD:} a Conserved Domain Database for protein classification},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {192--196},
year = {2005},
url = {https://doi.org/10.1093/nar/gki069},
doi = {10.1093/NAR/GKI069},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Marchler-BauerACDGGHHJKLLLLMMSSSTYYZB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Marchler-BauerADFGHHJJLLLMMMNPRSSSTVWYYB03,
author = {Aron Marchler{-}Bauer and
John B. Anderson and
Carol DeWeese{-}Scott and
Natalie D. Fedorova and
Lewis Y. Geer and
Siqian He and
David I. Hurwitz and
John D. Jackson and
Aviva R. Jacobs and
Christopher J. Lanczycki and
Cynthia A. Liebert and
Chunlei Liu and
Thomas Madej and
Gabriele H. Marchler and
Raja Mazumder and
Anastasia N. Nikolskaya and
Anna R. Panchenko and
Bachoti S. Rao and
Benjamin A. Shoemaker and
Vahan Simonyan and
James S. Song and
Paul A. Thiessen and
Sona Vasudevan and
Yanli Wang and
Roxanne A. Yamashita and
Jodie J. Yin and
Stephen H. Bryant},
title = {{CDD:} a curated Entrez database of conserved domain alignments},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {383--387},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg087},
doi = {10.1093/NAR/GKG087},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/Marchler-BauerADFGHHJJLLLMMMNPRSSSTVWYYB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChenADFGHHJJLLLMMMMNRPSSSTVWYYB03,
author = {Jie Chen and
John B. Anderson and
Carol DeWeese{-}Scott and
Natalie D. Fedorova and
Lewis Y. Geer and
Siqian He and
David I. Hurwitz and
John D. Jackson and
Aviva R. Jacobs and
Christopher J. Lanczycki and
Cynthia A. Liebert and
Chunlei Liu and
Thomas Madej and
Aron Marchler{-}Bauer and
Gabriele H. Marchler and
Raja Mazumder and
Anastasia N. Nikolskaya and
Bachoti S. Rao and
Anna R. Panchenko and
Benjamin A. Shoemaker and
Vahan Simonyan and
James S. Song and
Paul A. Thiessen and
Sona Vasudevan and
Yanli Wang and
Roxanne A. Yamashita and
Jodie J. Yin and
Stephen H. Bryant},
title = {{MMDB:} Entrez's 3D-structure database},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {474--477},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg086},
doi = {10.1093/NAR/GKG086},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ChenADFGHHJJLLLMMMMNRPSSSTVWYYB03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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