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ORCIDBibTeX records: Jeroen van der Laak
@article{DBLP:journals/cbm/FarynaLL24,
author = {Khrystyna Faryna and
Jeroen van der Laak and
Geert Litjens},
title = {Automatic data augmentation to improve generalization of deep learning
in H{\&}E stained histopathology},
journal = {Comput. Biol. Medicine},
volume = {170},
pages = {108018},
year = {2024},
url = {https://doi.org/10.1016/j.compbiomed.2024.108018},
doi = {10.1016/J.COMPBIOMED.2024.108018},
timestamp = {Sat, 08 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cbm/FarynaLL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/LinmansRLL24,
author = {Jasper Linmans and
Gabriel Raya and
Jeroen van der Laak and
Geert Litjens},
title = {Diffusion models for out-of-distribution detection in digital pathology},
journal = {Medical Image Anal.},
volume = {93},
pages = {103088},
year = {2024},
url = {https://doi.org/10.1016/j.media.2024.103088},
doi = {10.1016/J.MEDIA.2024.103088},
timestamp = {Sat, 08 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/LinmansRLL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/LinmansHLL24,
author = {Jasper Linmans and
Emiel Hoogeboom and
Jeroen van der Laak and
Geert Litjens},
title = {The Latent Doctor Model for Modeling Inter-Observer Variability},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {28},
number = {1},
pages = {343--354},
year = {2024},
url = {https://doi.org/10.1109/JBHI.2023.3323582},
doi = {10.1109/JBHI.2023.3323582},
timestamp = {Fri, 08 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/titb/LinmansHLL24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/JiaoLALTBCMPPKBRLGWKLRVC24,
author = {Yiping Jiao and
Jeroen van der Laak and
Shadi Albarqouni and
Zhang Li and
Tao Tan and
Abhir Bhalerao and
Shenghua Cheng and
Jiabo Ma and
John Pocock and
Josien P. W. Pluim and
Navid Alemi Koohbanani and
Raja Muhammad Saad Bashir and
Shan{-}E{-}Ahmed Raza and
Sibo Liu and
Simon Graham and
Suzanne C. Wetstein and
Syed Ali Khurram and
Xiuli Liu and
Nasir M. Rajpoot and
Mitko Veta and
Francesco Ciompi},
title = {{LYSTO:} The Lymphocyte Assessment Hackathon and Benchmark Dataset},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {28},
number = {3},
pages = {1161--1172},
year = {2024},
url = {https://doi.org/10.1109/JBHI.2023.3327489},
doi = {10.1109/JBHI.2023.3327489},
timestamp = {Sat, 08 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/titb/JiaoLALTBCMPPKBRLGWKLRVC24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2404-07208,
author = {Nadieh Khalili and
Joey Spronck and
Francesco Ciompi and
Jeroen van der Laak and
Geert Litjens},
title = {Uncertainty-guided annotation enhances segmentation with the human-in-the-loop},
journal = {CoRR},
volume = {abs/2404.07208},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2404.07208},
doi = {10.48550/ARXIV.2404.07208},
eprinttype = {arXiv},
eprint = {2404.07208},
timestamp = {Thu, 16 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2404-07208.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2404-18152,
author = {Cl{\'{e}}ment Grisi and
Geert Litjens and
Jeroen van der Laak},
title = {Masked Attention as a Mechanism for Improving Interpretability of
Vision Transformers},
journal = {CoRR},
volume = {abs/2404.18152},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2404.18152},
doi = {10.48550/ARXIV.2404.18152},
eprinttype = {arXiv},
eprint = {2404.18152},
timestamp = {Mon, 27 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2404-18152.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2406-11538,
author = {Artur Jurgas and
Marek Wodzinski and
Marina D'Amato and
Jeroen van der Laak and
Manfredo Atzori and
Henning M{\"{u}}ller},
title = {Improving Quality Control of Whole Slide Images by Explicit Artifact
Augmentation},
journal = {CoRR},
volume = {abs/2406.11538},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2406.11538},
doi = {10.48550/ARXIV.2406.11538},
eprinttype = {arXiv},
eprint = {2406.11538},
timestamp = {Thu, 18 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2406-11538.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/LinmansELL23,
author = {Jasper Linmans and
Stefan Elfwing and
Jeroen van der Laak and
Geert Litjens},
title = {Predictive uncertainty estimation for out-of-distribution detection
in digital pathology},
journal = {Medical Image Anal.},
volume = {83},
pages = {102655},
year = {2023},
url = {https://doi.org/10.1016/j.media.2022.102655},
doi = {10.1016/J.MEDIA.2022.102655},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/LinmansELL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/BandiBDKGLL23,
author = {P{\'{e}}ter B{\'{a}}ndi and
Maschenka Balkenhol and
Marcory Van Dijk and
Michel Kok and
Bram van Ginneken and
Jeroen van der Laak and
Geert Litjens},
title = {Continual learning strategies for cancer-independent detection of
lymph node metastases},
journal = {Medical Image Anal.},
volume = {85},
pages = {102755},
year = {2023},
url = {https://doi.org/10.1016/j.media.2023.102755},
doi = {10.1016/J.MEDIA.2023.102755},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/BandiBDKGLL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/DooperPAHJLL23,
author = {Stephan Dooper and
Hans Pinckaers and
Witali Aswolinskiy and
Konnie M. Hebeda and
Sofia Jarkman and
Jeroen van der Laak and
Geert Litjens},
title = {Gigapixel end-to-end training using streaming and attention},
journal = {Medical Image Anal.},
volume = {88},
pages = {102881},
year = {2023},
url = {https://doi.org/10.1016/j.media.2023.102881},
doi = {10.1016/J.MEDIA.2023.102881},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/DooperPAHJLL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/SpronckGEBTRWHT23,
author = {Joey Spronck and
Thijs Gelton and
Leander van Eekelen and
Joep Bogaerts and
Leslie Tessier and
Mart van Rijthoven and
Lieke van der Woude and
Michel van den Heuvel and
Willemijn Theelen and
Jeroen van der Laak and
Francesco Ciompi},
editor = {Ipek Oguz and
Jack H. Noble and
Xiaoxiao Li and
Martin Styner and
Christian Baumgartner and
Mirabela Rusu and
Tobias Heimann and
Despina Kontos and
Bennett A. Landman and
Benoit M. Dawant},
title = {nnUNet meets pathology: Bridging the gap for application to whole
slide images and computational biomarkers},
booktitle = {Medical Imaging with Deep Learning, {MIDL} 2023, 10-12 July 2023,
Nashville, TN, {USA}},
series = {Proceedings of Machine Learning Research},
volume = {227},
pages = {1859--1874},
publisher = {{PMLR}},
year = {2023},
url = {https://proceedings.mlr.press/v227/spronck24a.html},
timestamp = {Tue, 20 Feb 2024 17:19:52 +0100},
biburl = {https://dblp.org/rec/conf/midl/SpronckGEBTRWHT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2301-06304,
author = {Yiping Jiao and
Jeroen van der Laak and
Shadi Albarqouni and
Zhang Li and
Tao Tan and
Abhir Bhalerao and
Jiabo Ma and
Jiamei Sun and
Johnathon Pocock and
Josien P. W. Pluim and
Navid Alemi Koohbanani and
Raja Muhammad Saad Bashir and
Shan E Ahmed Raza and
Sibo Liu and
Simon Graham and
Suzanne C. Wetstein and
Syed Ali Khurram and
Thomas Watson and
Nasir M. Rajpoot and
Mitko Veta and
Francesco Ciompi},
title = {{LYSTO:} The Lymphocyte Assessment Hackathon and Benchmark Dataset},
journal = {CoRR},
volume = {abs/2301.06304},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2301.06304},
doi = {10.48550/ARXIV.2301.06304},
eprinttype = {arXiv},
eprint = {2301.06304},
timestamp = {Thu, 16 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2301-06304.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-12619,
author = {Cl{\'{e}}ment Grisi and
Geert Litjens and
Jeroen van der Laak},
title = {Hierarchical Vision Transformers for Context-Aware Prostate Cancer
Grading in Whole Slide Images},
journal = {CoRR},
volume = {abs/2312.12619},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.12619},
doi = {10.48550/ARXIV.2312.12619},
eprinttype = {arXiv},
eprint = {2312.12619},
timestamp = {Wed, 17 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-12619.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/Marini0OWCRABPP22,
author = {Niccol{\`{o}} Marini and
Stefano Marchesin and
Sebastian Ot{\'{a}}lora and
Marek Wodzinski and
Alessandro Caputo and
Mart van Rijthoven and
Witali Aswolinskiy and
John{-}Melle Bokhorst and
Damian Podareanu and
Edyta Petters and
Svetla Boytcheva and
Genziana Buttafuoco and
Simona Vatrano and
Filippo Fraggetta and
Jeroen van der Laak and
Maristella Agosti and
Francesco Ciompi and
Gianmaria Silvello and
Henning M{\"{u}}ller and
Manfredo Atzori},
title = {Unleashing the potential of digital pathology data by training computer-aided
diagnosis models without human annotations},
journal = {npj Digit. Medicine},
volume = {5},
year = {2022},
url = {https://doi.org/10.1038/s41746-022-00635-4},
doi = {10.1038/S41746-022-00635-4},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/Marini0OWCRABPP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-06193,
author = {P{\'{e}}ter B{\'{a}}ndi and
Maschenka Balkenhol and
Marcory Van Dijk and
Bram van Ginneken and
Jeroen van der Laak and
Geert Litjens},
title = {Domain adaptation strategies for cancer-independent detection of lymph
node metastases},
journal = {CoRR},
volume = {abs/2207.06193},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2207.06193},
doi = {10.48550/ARXIV.2207.06193},
eprinttype = {arXiv},
eprint = {2207.06193},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2207-06193.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fcomp/MariniOPRLCMA21,
author = {Niccol{\`{o}} Marini and
Sebastian Ot{\'{a}}lora and
Damian Podareanu and
Mart van Rijthoven and
Jeroen van der Laak and
Francesco Ciompi and
Henning M{\"{u}}ller and
Manfredo Atzori},
title = {Multi{\_}Scale{\_}Tools: {A} Python Library to Exploit Multi-Scale
Whole Slide Images},
journal = {Frontiers Comput. Sci.},
volume = {3},
pages = {684521},
year = {2021},
url = {https://doi.org/10.3389/fcomp.2021.684521},
doi = {10.3389/FCOMP.2021.684521},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fcomp/MariniOPRLCMA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/RijthovenBSLC21,
author = {Mart van Rijthoven and
Maschenka Balkenhol and
Karina Silina and
Jeroen van der Laak and
Francesco Ciompi},
title = {HookNet: Multi-resolution convolutional neural networks for semantic
segmentation in histopathology whole-slide images},
journal = {Medical Image Anal.},
volume = {68},
pages = {101890},
year = {2021},
url = {https://doi.org/10.1016/j.media.2020.101890},
doi = {10.1016/J.MEDIA.2020.101890},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/RijthovenBSLC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/BelBL021,
author = {Thomas de Bel and
John{-}Melle Bokhorst and
Jeroen van der Laak and
Geert Litjens},
title = {Residual cyclegan for robust domain transformation of histopathological
tissue slides},
journal = {Medical Image Anal.},
volume = {70},
pages = {102004},
year = {2021},
url = {https://doi.org/10.1016/j.media.2021.102004},
doi = {10.1016/J.MEDIA.2021.102004},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/BelBL021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pami/TellezLLC21,
author = {David Tellez and
Geert Litjens and
Jeroen van der Laak and
Francesco Ciompi},
title = {Neural Image Compression for Gigapixel Histopathology Image Analysis},
journal = {{IEEE} Trans. Pattern Anal. Mach. Intell.},
volume = {43},
number = {2},
pages = {567--578},
year = {2021},
url = {https://doi.org/10.1109/TPAMI.2019.2936841},
doi = {10.1109/TPAMI.2019.2936841},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pami/TellezLLC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/titb/CiompiVLR21,
author = {Francesco Ciompi and
Mitko Veta and
Jeroen van der Laak and
Nasir M. Rajpoot},
title = {Editorial Computational Pathology},
journal = {{IEEE} J. Biomed. Health Informatics},
volume = {25},
number = {2},
pages = {303--306},
year = {2021},
url = {https://doi.org/10.1109/JBHI.2021.3052029},
doi = {10.1109/JBHI.2021.3052029},
timestamp = {Tue, 02 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/titb/CiompiVLR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/PinckaersBLL21,
author = {Hans Pinckaers and
Wouter Bulten and
Jeroen van der Laak and
Geert Litjens},
title = {Detection of Prostate Cancer in Whole-Slide Images Through End-to-End
Training With Image-Level Labels},
journal = {{IEEE} Trans. Medical Imaging},
volume = {40},
number = {7},
pages = {1817--1826},
year = {2021},
url = {https://doi.org/10.1109/TMI.2021.3066295},
doi = {10.1109/TMI.2021.3066295},
timestamp = {Thu, 27 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/PinckaersBLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/FarynaL021,
author = {Khrystyna Faryna and
Jeroen van der Laak and
Geert Litjens},
editor = {Mattias P. Heinrich and
Qi Dou and
Marleen de Bruijne and
Jan Lellmann and
Alexander Schlaefer and
Floris Ernst},
title = {Tailoring automated data augmentation to H{\&}E-stained histopathology},
booktitle = {Medical Imaging with Deep Learning, 7-9 July 2021, L{\"{u}}beck,
Germany},
series = {Proceedings of Machine Learning Research},
volume = {143},
pages = {168--178},
publisher = {{PMLR}},
year = {2021},
url = {https://proceedings.mlr.press/v143/faryna21a.html},
timestamp = {Tue, 13 Dec 2022 14:39:07 +0100},
biburl = {https://dblp.org/rec/conf/midl/FarynaL021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/AswolinskiyTRWL21,
author = {Witali Aswolinskiy and
David Tellez and
Gabriel Raya and
Lieke van der Woude and
Monika Looijen{-}Salamon and
Jeroen van der Laak and
Katrien Grunberg and
Francesco Ciompi},
editor = {John E. Tomaszewski and
Aaron D. Ward},
title = {Neural image compression for non-small cell lung cancer subtype classification
in H{\&}E stained whole-slide images},
booktitle = {Medical Imaging 2021: Digital Pathology, Online, February 15-19, 2021},
series = {{SPIE} Proceedings},
volume = {11603},
publisher = {{SPIE}},
year = {2021},
url = {https://doi.org/10.1117/12.2581943},
doi = {10.1117/12.2581943},
timestamp = {Thu, 21 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midp/AswolinskiyTRWL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/Laak21,
author = {Jeroen A. W. M. van der Laak},
editor = {John E. Tomaszewski and
Aaron D. Ward},
title = {Computational Pathology: What is the way forward?},
booktitle = {Medical Imaging 2021: Digital Pathology, Online, February 15-19, 2021},
series = {{SPIE} Proceedings},
volume = {11603},
publisher = {{SPIE}},
year = {2021},
url = {https://doi.org/10.1117/12.2586357},
doi = {10.1117/12.2586357},
timestamp = {Wed, 13 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midp/Laak21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/RijthovenBABLC21,
author = {Mart van Rijthoven and
Maschenka Balkenhol and
Manfredo Atzori and
Peter Bult and
Jeroen van der Laak and
Francesco Ciompi},
editor = {John E. Tomaszewski and
Aaron D. Ward},
title = {Few-shot weakly supervised detection and retrieval in histopathology
whole-slide images},
booktitle = {Medical Imaging 2021: Digital Pathology, Online, February 15-19, 2021},
series = {{SPIE} Proceedings},
volume = {11603},
publisher = {{SPIE}},
year = {2021},
url = {https://doi.org/10.1117/12.2582132},
doi = {10.1117/12.2582132},
timestamp = {Thu, 21 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midp/RijthovenBABLC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/compay/2021,
editor = {Manfredo Atzori and
Nikolay Burlutskiy and
Francesco Ciompi and
Zhang Li and
Fayyaz A. Minhas and
Henning M{\"{u}}ller and
Tingying Peng and
Nasir M. Rajpoot and
Ben Torben{-}Nielsen and
Jeroen van der Laak and
Mitko Veta and
Yinyin Yuan and
Inti Zlobec},
title = {{MICCAI} Workshop on Computational Pathology, COMPAY@MICCAI 2021,
27 September 2021, Virtual Event},
series = {Proceedings of Machine Learning Research},
volume = {156},
publisher = {{PMLR}},
year = {2021},
url = {http://proceedings.mlr.press/v156/},
timestamp = {Thu, 22 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/compay/2021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@misc{DBLP:data/10/LaakLWH21,
author = {Jeroen van der Laak and
Johannes Lotz and
Nick Weiss and
Stefan Heldmann},
title = {HyReCo - Hybrid re-stained and consecutive histological serial sections},
publisher = {{IEEE} DataPort},
year = {2021},
month = dec,
howpublished = {\url{https://doi.org/10.21227/pzj5-bs61}},
note = {Accessed on YYYY-MM-DD.},
url = {https://doi.org/10.21227/pzj5-bs61},
doi = {10.21227/PZJ5-BS61},
timestamp = {Tue, 18 Jun 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/data/10/LaakLWH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-13150,
author = {Johannes Lotz and
Nick Weiss and
Jeroen van der Laak and
Stefan Heldmann},
title = {High-resolution Image Registration of Consecutive and Re-stained Sections
in Histopathology},
journal = {CoRR},
volume = {abs/2106.13150},
year = {2021},
url = {https://arxiv.org/abs/2106.13150},
eprinttype = {arXiv},
eprint = {2106.13150},
timestamp = {Thu, 01 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-13150.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2109-07892,
author = {John{-}Melle Bokhorst and
Iris D. Nagtegaal and
Filippo Fraggetta and
Simona Vatrano and
Wilma Mesker and
Michael Vieth and
Jeroen van der Laak and
Francesco Ciompi},
title = {Automated risk classification of colon biopsies based on semantic
segmentation of histopathology images},
journal = {CoRR},
volume = {abs/2109.07892},
year = {2021},
url = {https://arxiv.org/abs/2109.07892},
eprinttype = {arXiv},
eprint = {2109.07892},
timestamp = {Wed, 22 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2109-07892.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/LinmansL020,
author = {Jasper Linmans and
Jeroen van der Laak and
Geert Litjens},
editor = {Tal Arbel and
Ismail Ben Ayed and
Marleen de Bruijne and
Maxime Descoteaux and
Herv{\'{e}} Lombaert and
Christopher Pal},
title = {Efficient Out-of-Distribution Detection in Digital Pathology Using
Multi-Head Convolutional Neural Networks},
booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL}
2020, 6-8 July 2020, Montr{\'{e}}al, QC, Canada},
series = {Proceedings of Machine Learning Research},
volume = {121},
pages = {465--478},
publisher = {{PMLR}},
year = {2020},
url = {http://proceedings.mlr.press/v121/linmans20a.html},
timestamp = {Fri, 27 Nov 2020 12:58:38 +0100},
biburl = {https://dblp.org/rec/conf/midl/LinmansL020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/TellezHVGNDLC20,
author = {David Tellez and
Diederik H{\"{o}}ppener and
Cornelis Verhoef and
Dirk J. Gr{\"{u}}nhagen and
Pieter Nierop and
Michal Drozdzal and
Jeroen van der Laak and
Francesco Ciompi},
editor = {Tal Arbel and
Ismail Ben Ayed and
Marleen de Bruijne and
Maxime Descoteaux and
Herv{\'{e}} Lombaert and
Christopher Pal},
title = {Extending Unsupervised Neural Image Compression With Supervised Multitask
Learning},
booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL}
2020, 6-8 July 2020, Montr{\'{e}}al, QC, Canada},
series = {Proceedings of Machine Learning Research},
volume = {121},
pages = {770--783},
publisher = {{PMLR}},
year = {2020},
url = {http://proceedings.mlr.press/v121/tellez20a.html},
timestamp = {Mon, 30 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midl/TellezHVGNDLC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2002-04500,
author = {Wouter Bulten and
Maschenka Balkenhol and
Jean{-}Jo{\"{e}}l Awoumou Belinga and
Am{\'{e}}rico Brilhante and
Asli {\c{C}}akir and
Xavier Farr{\'{e}} and
Katerina Geronatsiou and
Vincent Molini{\'{e}} and
Guilherme Pereira and
Paromita Roy and
G{\"{u}}nter Saile and
Paulo Salles and
Ewout Schaafsma and
Jo{\"{e}}lle Tschui and
Anne{-}Marie Vos and
Hester van Boven and
Robert Vink and
Jeroen van der Laak and
Christina A. Hulsbergen van de Kaa and
Geert Litjens},
title = {Artificial Intelligence Assistance Significantly Improves Gleason
Grading of Prostate Biopsies by Pathologists},
journal = {CoRR},
volume = {abs/2002.04500},
year = {2020},
url = {https://arxiv.org/abs/2002.04500},
eprinttype = {arXiv},
eprint = {2002.04500},
timestamp = {Thu, 23 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2002-04500.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2004-07041,
author = {David Tellez and
Diederik H{\"{o}}ppener and
Cornelis Verhoef and
Dirk J. Gr{\"{u}}nhagen and
Pieter Nierop and
Michal Drozdzal and
Jeroen van der Laak and
Francesco Ciompi},
title = {Extending Unsupervised Neural Image Compression With Supervised Multitask
Learning},
journal = {CoRR},
volume = {abs/2004.07041},
year = {2020},
url = {https://arxiv.org/abs/2004.07041},
eprinttype = {arXiv},
eprint = {2004.07041},
timestamp = {Fri, 27 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2004-07041.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-03394,
author = {Hans Pinckaers and
Wouter Bulten and
Jeroen van der Laak and
Geert Litjens},
title = {Detection of prostate cancer in whole-slide images through end-to-end
training with image-level labels},
journal = {CoRR},
volume = {abs/2006.03394},
year = {2020},
url = {https://arxiv.org/abs/2006.03394},
eprinttype = {arXiv},
eprint = {2006.03394},
timestamp = {Thu, 23 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-03394.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-12230,
author = {Mart van Rijthoven and
Maschenka Balkenhol and
Karina Silina and
Jeroen van der Laak and
Francesco Ciompi},
title = {HookNet: multi-resolution convolutional neural networks for semantic
segmentation in histopathology whole-slide images},
journal = {CoRR},
volume = {abs/2006.12230},
year = {2020},
url = {https://arxiv.org/abs/2006.12230},
eprinttype = {arXiv},
eprint = {2006.12230},
timestamp = {Wed, 24 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-12230.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2012-04974,
author = {Caner Mercan and
Maschenka Balkenhol and
Roberto Salgado and
Mark Sherman and
Philippe Vielh and
Willem Vreuls and
Ant{\'{o}}nio Pol{\'{o}}nia and
Hugo M. Horlings and
Wilko Weichert and
Jodi M. Carter and
Peter Bult and
Matthias Christgen and
Carsten Denkert and
Koen van de Vijver and
Jeroen van der Laak and
Francesco Ciompi},
title = {Automated Scoring of Nuclear Pleomorphism Spectrum with Pathologist-level
Performance in Breast Cancer},
journal = {CoRR},
volume = {abs/2012.04974},
year = {2020},
url = {https://arxiv.org/abs/2012.04974},
eprinttype = {arXiv},
eprint = {2012.04974},
timestamp = {Thu, 28 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2012-04974.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/Swiderska-Chadaj19,
author = {Zaneta Swiderska{-}Chadaj and
Hans Pinckaers and
Mart van Rijthoven and
Maschenka Balkenhol and
Margarita Melnikova and
Oscar Geessink and
Quirine Manson and
Mark Sherman and
Ant{\'{o}}nio Pol{\'{o}}nia and
Jeremy Parry and
Mustapha Abubakar and
Geert Litjens and
Jeroen van der Laak and
Francesco Ciompi},
title = {Learning to detect lymphocytes in immunohistochemistry with deep learning},
journal = {Medical Image Anal.},
volume = {58},
year = {2019},
url = {https://doi.org/10.1016/j.media.2019.101547},
doi = {10.1016/J.MEDIA.2019.101547},
timestamp = {Thu, 28 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/Swiderska-Chadaj19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/TellezLBBBCL19,
author = {David Tellez and
Geert Litjens and
P{\'{e}}ter B{\'{a}}ndi and
Wouter Bulten and
John{-}Melle Bokhorst and
Francesco Ciompi and
Jeroen van der Laak},
title = {Quantifying the effects of data augmentation and stain color normalization
in convolutional neural networks for computational pathology},
journal = {Medical Image Anal.},
volume = {58},
year = {2019},
url = {https://doi.org/10.1016/j.media.2019.101544},
doi = {10.1016/J.MEDIA.2019.101544},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/TellezLBBBCL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/BandiGMDBHBLPZL19,
author = {P{\'{e}}ter B{\'{a}}ndi and
Oscar Geessink and
Quirine Manson and
Marcory Van Dijk and
Maschenka Balkenhol and
Meyke Hermsen and
Babak Ehteshami Bejnordi and
Byungjae Lee and
Kyunghyun Paeng and
Aoxiao Zhong and
Quanzheng Li and
Farhad Ghazvinian Zanjani and
Svitlana Zinger and
Keisuke Fukuta and
Daisuke Komura and
Vlado Ovtcharov and
Shenghua Cheng and
Shaoqun Zeng and
Jeppe Thagaard and
Anders B. Dahl and
Huangjing Lin and
Hao Chen and
Ludwig Jacobsson and
Martin Hedlund and
Melih {\c{C}}etin and
Eren Halici and
Hunter Jackson and
Richard Chen and
Fabian Both and
J{\"{o}}rg Franke and
Heidi K{\"{u}}sters{-}Vandevelde and
Willem Vreuls and
Peter Bult and
Bram van Ginneken and
Jeroen van der Laak and
Geert Litjens},
title = {From Detection of Individual Metastases to Classification of Lymph
Node Status at the Patient Level: The {CAMELYON17} Challenge},
journal = {{IEEE} Trans. Medical Imaging},
volume = {38},
number = {2},
pages = {550--560},
year = {2019},
url = {https://doi.org/10.1109/TMI.2018.2867350},
doi = {10.1109/TMI.2018.2867350},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/BandiGMDBHBLPZL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/BokhorstPZNLC19,
author = {John{-}Melle Bokhorst and
Hans Pinckaers and
Peter van Zwam and
Iris Nagtegaal and
Jeroen van der Laak and
Francesco Ciompi},
editor = {M. Jorge Cardoso and
Aasa Feragen and
Ben Glocker and
Ender Konukoglu and
Ipek Oguz and
Gozde B. Unal and
Tom Vercauteren},
title = {Learning from sparsely annotated data for semantic segmentation in
histopathology images},
booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL}
2019, 8-10 July 2019, London, United Kingdom},
series = {Proceedings of Machine Learning Research},
volume = {102},
pages = {84--91},
publisher = {{PMLR}},
year = {2019},
url = {http://proceedings.mlr.press/v102/bokhorst19a.html},
timestamp = {Mon, 08 Jul 2019 16:13:41 +0200},
biburl = {https://dblp.org/rec/conf/midl/BokhorstPZNLC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midl/BelHKLL19,
author = {Thomas de Bel and
Meyke Hermsen and
Jesper Kers and
Jeroen van der Laak and
Geert Litjens},
editor = {M. Jorge Cardoso and
Aasa Feragen and
Ben Glocker and
Ender Konukoglu and
Ipek Oguz and
Gozde B. Unal and
Tom Vercauteren},
title = {Stain-Transforming Cycle-Consistent Generative Adversarial Networks
for Improved Segmentation of Renal Histopathology},
booktitle = {International Conference on Medical Imaging with Deep Learning, {MIDL}
2019, 8-10 July 2019, London, United Kingdom},
series = {Proceedings of Machine Learning Research},
volume = {102},
pages = {151--163},
publisher = {{PMLR}},
year = {2019},
url = {http://proceedings.mlr.press/v102/de-bel19a.html},
timestamp = {Thu, 23 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/midl/BelHKLL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1902-06543,
author = {David Tellez and
Geert Litjens and
P{\'{e}}ter B{\'{a}}ndi and
Wouter Bulten and
John{-}Melle Bokhorst and
Francesco Ciompi and
Jeroen van der Laak},
title = {Quantifying the effects of data augmentation and stain color normalization
in convolutional neural networks for computational pathology},
journal = {CoRR},
volume = {abs/1902.06543},
year = {2019},
url = {http://arxiv.org/abs/1902.06543},
eprinttype = {arXiv},
eprint = {1902.06543},
timestamp = {Thu, 23 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1902-06543.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1907-07980,
author = {Wouter Bulten and
Hans Pinckaers and
Hester van Boven and
Robert Vink and
Thomas de Bel and
Bram van Ginneken and
Jeroen van der Laak and
Christina A. Hulsbergen van de Kaa and
Geert Litjens},
title = {Automated Gleason Grading of Prostate Biopsies using Deep Learning},
journal = {CoRR},
volume = {abs/1907.07980},
year = {2019},
url = {http://arxiv.org/abs/1907.07980},
eprinttype = {arXiv},
eprint = {1907.07980},
timestamp = {Thu, 23 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1907-07980.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/TellezBOLVBWVMK18,
author = {David Tellez and
Maschenka Balkenhol and
Irene Otte{-}H{\"{o}}ller and
Rob van de Loo and
Rob Vogels and
Peter Bult and
Carla Wauters and
Willem Vreuls and
Suzanne Mol and
Nico Karssemeijer and
Geert Litjens and
Jeroen van der Laak and
Francesco Ciompi},
title = {Whole-Slide Mitosis Detection in H{\&}E Breast Histology Using
{PHH3} as a Reference to Train Distilled Stain-Invariant Convolutional
Networks},
journal = {{IEEE} Trans. Medical Imaging},
volume = {37},
number = {9},
pages = {2126--2136},
year = {2018},
url = {https://doi.org/10.1109/TMI.2018.2820199},
doi = {10.1109/TMI.2018.2820199},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tmi/TellezBOLVBWVMK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/ZanjaniZBLW18,
author = {Farhad Ghazvinian Zanjani and
Svitlana Zinger and
Babak Ehteshami Bejnordi and
Jeroen A. W. M. van der Laak and
Peter H. N. de With},
title = {Stain normalization of histopathology images using generative adversarial
networks},
booktitle = {15th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2018, Washington, DC, USA, April 4-7, 2018},
pages = {573--577},
publisher = {{IEEE}},
year = {2018},
url = {https://doi.org/10.1109/ISBI.2018.8363641},
doi = {10.1109/ISBI.2018.8363641},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/ZanjaniZBLW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/BelHLL18,
author = {Thomas de Bel and
Meyke Hermsen and
Geert Litjens and
Jeroen van der Laak},
editor = {Danail Stoyanov and
Zeike Taylor and
Francesco Ciompi and
Yanwu Xu and
Anne L. Martel and
Lena Maier{-}Hein and
Nasir M. Rajpoot and
Jeroen van der Laak and
Mitko Veta and
Stephen J. McKenna and
David R. J. Snead and
Emanuele Trucco and
Mona Kathryn Garvin and
Xinjian Chen and
Hrvoje Bogunovic},
title = {Structure Instance Segmentation in Renal Tissue: {A} Case Study on
Tubular Immune Cell Detection},
booktitle = {Computational Pathology and Ophthalmic Medical Image Analysis - First
International Workshop, {COMPAY} 2018, and 5th International Workshop,
{OMIA} 2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain,
September 16-20, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11039},
pages = {112--119},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00949-6\_14},
doi = {10.1007/978-3-030-00949-6\_14},
timestamp = {Sat, 10 Aug 2024 18:28:12 +0200},
biburl = {https://dblp.org/rec/conf/miccai/BelHLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/miccai/BokhorstRGNLC18,
author = {John{-}Melle Bokhorst and
Lucia Rijstenberg and
Danny Goudkade and
Iris Nagtegaal and
Jeroen van der Laak and
Francesco Ciompi},
editor = {Danail Stoyanov and
Zeike Taylor and
Francesco Ciompi and
Yanwu Xu and
Anne L. Martel and
Lena Maier{-}Hein and
Nasir M. Rajpoot and
Jeroen van der Laak and
Mitko Veta and
Stephen J. McKenna and
David R. J. Snead and
Emanuele Trucco and
Mona Kathryn Garvin and
Xinjian Chen and
Hrvoje Bogunovic},
title = {Automatic Detection of Tumor Budding in Colorectal Carcinoma with
Deep Learning},
booktitle = {Computational Pathology and Ophthalmic Medical Image Analysis - First
International Workshop, {COMPAY} 2018, and 5th International Workshop,
{OMIA} 2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain,
September 16-20, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11039},
pages = {130--138},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00949-6\_16},
doi = {10.1007/978-3-030-00949-6\_16},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/miccai/BokhorstRGNLC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/BultenKLL18,
author = {Wouter Bulten and
Christina A. Hulsbergen van de Kaa and
Jeroen van der Laak and
Geert J. S. Litjens},
editor = {John E. Tomaszewski and
Metin N. Gurcan},
title = {Automated segmentation of epithelial tissue in prostatectomy slides
using deep learning},
booktitle = {Medical Imaging 2018: Digital Pathology, Houston, Texas, United States,
10-15 February 2018},
series = {{SPIE} Proceedings},
volume = {10581},
pages = {105810S},
publisher = {{SPIE}},
year = {2018},
url = {https://doi.org/10.1117/12.2292872},
doi = {10.1117/12.2292872},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midp/BultenKLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/GeijsILL18,
author = {Daan J. Geijs and
Milad Intezar and
Jeroen A. W. M. van der Laak and
Geert J. S. Litjens},
editor = {John E. Tomaszewski and
Metin N. Gurcan},
title = {Automatic color unmixing of {IHC} stained whole slide images},
booktitle = {Medical Imaging 2018: Digital Pathology, Houston, Texas, United States,
10-15 February 2018},
series = {{SPIE} Proceedings},
volume = {10581},
pages = {105810L},
publisher = {{SPIE}},
year = {2018},
url = {https://doi.org/10.1117/12.2293734},
doi = {10.1117/12.2293734},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midp/GeijsILL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/TellezBKLLC18,
author = {David Tellez and
Maschenka Balkenhol and
Nico Karssemeijer and
Geert Litjens and
Jeroen van der Laak and
Francesco Ciompi},
editor = {John E. Tomaszewski and
Metin N. Gurcan},
title = {H{\&}E stain augmentation improves generalization of convolutional
networks for histopathological mitosis detection},
booktitle = {Medical Imaging 2018: Digital Pathology, Houston, Texas, United States,
10-15 February 2018},
series = {{SPIE} Proceedings},
volume = {10581},
pages = {105810Z},
publisher = {{SPIE}},
year = {2018},
url = {https://doi.org/10.1117/12.2293048},
doi = {10.1117/12.2293048},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midp/TellezBKLLC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/BelHSHLL18,
author = {Thomas de Bel and
Meyke Hermsen and
Bart Smeets and
Luuk Hilbrands and
Jeroen van der Laak and
Geert Litjens},
editor = {John E. Tomaszewski and
Metin N. Gurcan},
title = {Automatic segmentation of histopathological slides of renal tissue
using deep learning},
booktitle = {Medical Imaging 2018: Digital Pathology, Houston, Texas, United States,
10-15 February 2018},
series = {{SPIE} Proceedings},
volume = {10581},
pages = {1058112},
publisher = {{SPIE}},
year = {2018},
url = {https://doi.org/10.1117/12.2293717},
doi = {10.1117/12.2293717},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midp/BelHSHLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/miccai/2018compay,
editor = {Danail Stoyanov and
Zeike Taylor and
Francesco Ciompi and
Yanwu Xu and
Anne L. Martel and
Lena Maier{-}Hein and
Nasir M. Rajpoot and
Jeroen van der Laak and
Mitko Veta and
Stephen J. McKenna and
David R. J. Snead and
Emanuele Trucco and
Mona Kathryn Garvin and
Xinjian Chen and
Hrvoje Bogunovic},
title = {Computational Pathology and Ophthalmic Medical Image Analysis - First
International Workshop, {COMPAY} 2018, and 5th International Workshop,
{OMIA} 2018, Held in Conjunction with {MICCAI} 2018, Granada, Spain,
September 16-20, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11039},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-00949-6},
doi = {10.1007/978-3-030-00949-6},
isbn = {978-3-030-00948-9},
timestamp = {Sat, 10 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/miccai/2018compay.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1808-05883,
author = {Wouter Bulten and
P{\'{e}}ter B{\'{a}}ndi and
Jeffrey Hoven and
Rob van de Loo and
Johannes Lotz and
Nick Weiss and
Jeroen van der Laak and
Bram van Ginneken and
Christina A. Hulsbergen van de Kaa and
Geert Litjens},
title = {Epithelium segmentation using deep learning in H{\&}E-stained
prostate specimens with immunohistochemistry as reference standard},
journal = {CoRR},
volume = {abs/1808.05883},
year = {2018},
url = {http://arxiv.org/abs/1808.05883},
eprinttype = {arXiv},
eprint = {1808.05883},
timestamp = {Thu, 23 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1808-05883.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1808-05896,
author = {David Tellez and
Maschenka Balkenhol and
Irene Otte{-}H{\"{o}}ller and
Rob van de Loo and
Rob Vogels and
Peter Bult and
Carla Wauters and
Willem Vreuls and
Suzanne Mol and
Nico Karssemeijer and
Geert Litjens and
Jeroen van der Laak and
Francesco Ciompi},
title = {Whole-Slide Mitosis Detection in H{\&}E Breast Histology Using
{PHH3} as a Reference to Train Distilled Stain-Invariant Convolutional
Networks},
journal = {CoRR},
volume = {abs/1808.05896},
year = {2018},
url = {http://arxiv.org/abs/1808.05896},
eprinttype = {arXiv},
eprint = {1808.05896},
timestamp = {Thu, 23 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1808-05896.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1811-02840,
author = {David Tellez and
Geert Litjens and
Jeroen van der Laak and
Francesco Ciompi},
title = {Neural Image Compression for Gigapixel Histopathology Image Analysis},
journal = {CoRR},
volume = {abs/1811.02840},
year = {2018},
url = {http://arxiv.org/abs/1811.02840},
eprinttype = {arXiv},
eprint = {1811.02840},
timestamp = {Thu, 23 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1811-02840.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cars/SteensBWLVMBLFK17,
author = {Stefan C. A. Steens and
Elise M. Bekers and
Willem L. J. Weijs and
Geert J. S. Litjens and
Andor Veltien and
Arie Maat and
Guido B. van den Broek and
Jeroen A. W. M. van der Laak and
Jurgen J. F{\"{u}}tterer and
Christina A. Hulsbergen van de Kaa and
Matthias A. W. Merkx and
Robert P. Takes},
title = {Evaluation of tongue squamous cell carcinoma resection margins using
ex-vivo {MR}},
journal = {Int. J. Comput. Assist. Radiol. Surg.},
volume = {12},
number = {5},
pages = {821--828},
year = {2017},
url = {https://doi.org/10.1007/s11548-017-1524-6},
doi = {10.1007/S11548-017-1524-6},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cars/SteensBWLVMBLFK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mia/LitjensKBSCGLGS17,
author = {Geert Litjens and
Thijs Kooi and
Babak Ehteshami Bejnordi and
Arnaud Arindra Adiyoso Setio and
Francesco Ciompi and
Mohsen Ghafoorian and
Jeroen A. W. M. van der Laak and
Bram van Ginneken and
Clara I. S{\'{a}}nchez},
title = {A survey on deep learning in medical image analysis},
journal = {Medical Image Anal.},
volume = {42},
pages = {60--88},
year = {2017},
url = {https://doi.org/10.1016/j.media.2017.07.005},
doi = {10.1016/J.MEDIA.2017.07.005},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mia/LitjensKBSCGLGS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/CiompiGBSBLGNL17,
author = {Francesco Ciompi and
Oscar Geessink and
Babak Ehteshami Bejnordi and
Gabriel Silva de Souza and
Alexi Baidoshvili and
Geert Litjens and
Bram van Ginneken and
Iris Nagtegaal and
Jeroen van der Laak},
title = {The importance of stain normalization in colorectal tissue classification
with convolutional networks},
booktitle = {14th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2017, Melbourne, Australia, April 18-21, 2017},
pages = {160--163},
publisher = {{IEEE}},
year = {2017},
url = {https://doi.org/10.1109/ISBI.2017.7950492},
doi = {10.1109/ISBI.2017.7950492},
timestamp = {Wed, 04 Oct 2023 17:01:25 +0200},
biburl = {https://dblp.org/rec/conf/isbi/CiompiGBSBLGNL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/BandiLIGCGLL17,
author = {P{\'{e}}ter B{\'{a}}ndi and
Rob van de Loo and
Milad Intezar and
Daan Geijs and
Francesco Ciompi and
Bram van Ginneken and
Jeroen van der Laak and
Geert Litjens},
title = {Comparison of different methods for tissue segmentation in histopathological
whole-slide images},
booktitle = {14th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2017, Melbourne, Australia, April 18-21, 2017},
pages = {591--595},
publisher = {{IEEE}},
year = {2017},
url = {https://doi.org/10.1109/ISBI.2017.7950590},
doi = {10.1109/ISBI.2017.7950590},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isbi/BandiLIGCGLL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbi/BejnordiLGMGSKL17,
author = {Babak Ehteshami Bejnordi and
Jimmy Lin and
Ben Glass and
Maeve Mullooly and
Gretchen L. Gierach and
Mark E. Sherman and
Nico Karssemeijer and
Jeroen van der Laak and
Andrew H. Beck},
title = {Deep learning-based assessment of tumor-associated stroma for diagnosing
breast cancer in histopathology images},
booktitle = {14th {IEEE} International Symposium on Biomedical Imaging, {ISBI}
2017, Melbourne, Australia, April 18-21, 2017},
pages = {929--932},
publisher = {{IEEE}},
year = {2017},
url = {https://doi.org/10.1109/ISBI.2017.7950668},
doi = {10.1109/ISBI.2017.7950668},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbi/BejnordiLGMGSKL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/LitjensKBSCGLGS17,
author = {Geert Litjens and
Thijs Kooi and
Babak Ehteshami Bejnordi and
Arnaud Arindra Adiyoso Setio and
Francesco Ciompi and
Mohsen Ghafoorian and
Jeroen A. W. M. van der Laak and
Bram van Ginneken and
Clara I. S{\'{a}}nchez},
title = {A Survey on Deep Learning in Medical Image Analysis},
journal = {CoRR},
volume = {abs/1702.05747},
year = {2017},
url = {http://arxiv.org/abs/1702.05747},
eprinttype = {arXiv},
eprint = {1702.05747},
timestamp = {Thu, 23 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/LitjensKBSCGLGS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BejnordiLGMGSKL17,
author = {Babak Ehteshami Bejnordi and
Jimmy Lin and
Ben Glass and
Maeve Mullooly and
Gretchen L. Gierach and
Mark E. Sherman and
Nico Karssemeijer and
Jeroen van der Laak and
Andrew H. Beck},
title = {Deep learning-based assessment of tumor-associated stroma for diagnosing
breast cancer in histopathology images},
journal = {CoRR},
volume = {abs/1702.05803},
year = {2017},
url = {http://arxiv.org/abs/1702.05803},
eprinttype = {arXiv},
eprint = {1702.05803},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BejnordiLGMGSKL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/CiompiGBSBLGNL17,
author = {Francesco Ciompi and
Oscar Geessink and
Babak Ehteshami Bejnordi and
Gabriel Silva de Souza and
Alexi Baidoshvili and
Geert Litjens and
Bram van Ginneken and
Iris Nagtegaal and
Jeroen van der Laak},
title = {The importance of stain normalization in colorectal tissue classification
with convolutional networks},
journal = {CoRR},
volume = {abs/1702.05931},
year = {2017},
url = {http://arxiv.org/abs/1702.05931},
eprinttype = {arXiv},
eprint = {1702.05931},
timestamp = {Thu, 23 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/CiompiGBSBLGNL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BandiLIGCGLL17,
author = {P{\'{e}}ter B{\'{a}}ndi and
Rob van de Loo and
Milad Intezar and
Daan Geijs and
Francesco Ciompi and
Bram van Ginneken and
Jeroen van der Laak and
Geert Litjens},
title = {Comparison of Different Methods for Tissue Segmentation in Histopathological
Whole-Slide Images},
journal = {CoRR},
volume = {abs/1703.05990},
year = {2017},
url = {http://arxiv.org/abs/1703.05990},
eprinttype = {arXiv},
eprint = {1703.05990},
timestamp = {Thu, 23 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BandiLIGCGLL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BejnordiZBHBGKL17,
author = {Babak Ehteshami Bejnordi and
Guido C. A. Zuidhof and
Maschenka Balkenhol and
Meyke Hermsen and
Peter Bult and
Bram van Ginneken and
Nico Karssemeijer and
Geert Litjens and
Jeroen van der Laak},
title = {Context-aware stacked convolutional neural networks for classification
of breast carcinomas in whole-slide histopathology images},
journal = {CoRR},
volume = {abs/1705.03678},
year = {2017},
url = {http://arxiv.org/abs/1705.03678},
eprinttype = {arXiv},
eprint = {1705.03678},
timestamp = {Thu, 23 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BejnordiZBHBGKL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/NijhofCWGMTCLS16,
author = {Bonnie Nijhof and
Anna Castells{-}Nobau and
Louis Wolf and
Jolanda M. Scheffer{-}de Gooyert and
Ignacio Monedero and
Laura Torroja and
Llu{\'{\i}}s Coromina and
Jeroen A. W. M. van der Laak and
Annette Schenck},
title = {A New Fiji-Based Algorithm That Systematically Quantifies Nine Synaptic
Parameters Provides Insights into \emph{Drosophila} {NMJ} Morphometry},
journal = {PLoS Comput. Biol.},
volume = {12},
number = {3},
year = {2016},
url = {https://doi.org/10.1371/journal.pcbi.1004823},
doi = {10.1371/JOURNAL.PCBI.1004823},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/NijhofCWGMTCLS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/BejnordiLTOHKL16,
author = {Babak Ehteshami Bejnordi and
Geert Litjens and
Nadya Timofeeva and
Irene Otte{-}H{\"{o}}ller and
Andr{\'{e}} Homeyer and
Nico Karssemeijer and
Jeroen A. W. M. van der Laak},
title = {Stain Specific Standardization of Whole-Slide Histopathological Images},
journal = {{IEEE} Trans. Medical Imaging},
volume = {35},
number = {2},
pages = {404--415},
year = {2016},
url = {https://doi.org/10.1109/TMI.2015.2476509},
doi = {10.1109/TMI.2015.2476509},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/BejnordiLTOHKL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tmi/BejnordiBLHBKL16,
author = {Babak Ehteshami Bejnordi and
Maschenka Balkenhol and
Geert Litjens and
Roland Holland and
Peter Bult and
Nico Karssemeijer and
Jeroen A. W. M. van der Laak},
title = {Automated Detection of {DCIS} in Whole-Slide H{\&}E Stained Breast
Histopathology Images},
journal = {{IEEE} Trans. Medical Imaging},
volume = {35},
number = {9},
pages = {2141--2150},
year = {2016},
url = {https://doi.org/10.1109/TMI.2016.2550620},
doi = {10.1109/TMI.2016.2550620},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tmi/BejnordiBLHBKL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bmvc/KandemirHDRLH16,
author = {Melih Kandemir and
Manuel Hau{\ss}mann and
Ferran Diego and
Kumar T. Rajamani and
Jeroen van der Laak and
Fred A. Hamprecht},
editor = {Richard C. Wilson and
Edwin R. Hancock and
William A. P. Smith},
title = {Variational Weakly Supervised Gaussian Processes},
booktitle = {Proceedings of the British Machine Vision Conference 2016, {BMVC}
2016, York, UK, September 19-22, 2016},
publisher = {{BMVA} Press},
year = {2016},
url = {https://bmva-archive.org.uk/bmvc/2016/papers/paper071/index.html},
timestamp = {Fri, 20 Sep 2024 10:02:52 +0200},
biburl = {https://dblp.org/rec/conf/bmvc/KandemirHDRLH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mammo/MertzanidouHRBH16,
author = {Thomy Mertzanidou and
John H. Hipwell and
Sara Reis and
Babak Ehteshami Bejnordi and
Meyke Hermsen and
Mehmet Dalmis and
Suzan Vreemann and
Bram Platel and
Jeroen van der Laak and
Nico Karssemeijer and
Ritse Mann and
Peter Bult and
David J. Hawkes},
editor = {Anders Tingberg and
Kristina L{\aa}ng and
Pontus Timberg},
title = {Whole Mastectomy Volume Reconstruction from 2D Radiographs and Its
Mapping to Histology},
booktitle = {Breast Imaging - 13th International Workshop, {IWDM} 2016, Malm{\"{o}},
Sweden, June 19-22, 2016, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9699},
pages = {367--374},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-41546-8\_46},
doi = {10.1007/978-3-319-41546-8\_46},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mammo/MertzanidouHRBH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/KostHBBLH16,
author = {Henning Kost and
Andr{\'{e}} Homeyer and
Peter Bult and
Maschenka C. A. Balkenhol and
Jeroen A. W. M. van der Laak and
Horst K. Hahn},
editor = {Metin N. Gurcan and
Anant Madabhushi},
title = {A generic nuclei detection method for histopathological breast images},
booktitle = {Medical Imaging 2016: Digital Pathology, San Diego, California, United
States, 27 February - 3 March 2016},
series = {{SPIE} Proceedings},
volume = {9791},
pages = {97911E},
publisher = {{SPIE}},
year = {2016},
url = {https://doi.org/10.1117/12.2209613},
doi = {10.1117/12.2209613},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midp/KostHBBLH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/BejnordiLHKL15,
author = {Babak Ehteshami Bejnordi and
Geert Litjens and
Meyke Hermsen and
Nico Karssemeijer and
Jeroen A. W. M. van der Laak},
editor = {Metin N. Gurcan and
Anant Madabhushi},
title = {A multi-scale superpixel classification approach to the detection
of regions of interest in whole slide histopathology images},
booktitle = {Medical Imaging 2015: Digital Pathology, Orlando, Florida, United
States, 21-26 February 2015},
series = {{SPIE} Proceedings},
volume = {9420},
pages = {94200H},
publisher = {{SPIE}},
year = {2015},
url = {https://doi.org/10.1117/12.2081768},
doi = {10.1117/12.2081768},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midp/BejnordiLHKL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/LitjensBTSKKL15,
author = {Geert Litjens and
Babak Ehteshami Bejnordi and
Nadya Timofeeva and
G. Swadi and
Iringo Kovacs and
Christina A. Hulsbergen van de Kaa and
Jeroen van der Laak},
editor = {Metin N. Gurcan and
Anant Madabhushi},
title = {Automated detection of prostate cancer in digitized whole-slide images
of {H} and E-stained biopsy specimens},
booktitle = {Medical Imaging 2015: Digital Pathology, Orlando, Florida, United
States, 21-26 February 2015},
series = {{SPIE} Proceedings},
volume = {9420},
pages = {94200B},
publisher = {{SPIE}},
year = {2015},
url = {https://doi.org/10.1117/12.2081366},
doi = {10.1117/12.2081366},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midp/LitjensBTSKKL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/ReisEMHHLPBH15,
author = {Sara Reis and
Bj{\"{o}}rn Eiben and
Thomy Mertzanidou and
John H. Hipwell and
Meyke Hermsen and
Jeroen van der Laak and
Sarah E. Pinder and
Peter Bult and
David J. Hawkes},
editor = {Metin N. Gurcan and
Anant Madabhushi},
title = {Minimum slice spacing required to reconstruct 3D shape for serial
sections of breast tissue for comparison with medical imaging},
booktitle = {Medical Imaging 2015: Digital Pathology, Orlando, Florida, United
States, 21-26 February 2015},
series = {{SPIE} Proceedings},
volume = {9420},
pages = {94200K},
publisher = {{SPIE}},
year = {2015},
url = {https://doi.org/10.1117/12.2081909},
doi = {10.1117/12.2081909},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midp/ReisEMHHLPBH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mammo/MertzanidouHDPLMKBH14,
author = {Thomy Mertzanidou and
John H. Hipwell and
Mehmet Dalmis and
Bram Platel and
Jeroen van der Laak and
Ritse Mann and
Nico Karssemeijer and
Peter Bult and
David J. Hawkes},
editor = {Hiroshi Fujita and
Takeshi Hara and
Chisako Muramatsu},
title = {Towards Spatial Correspondence between Specimen and In-vivo Breast
Imaging},
booktitle = {Breast Imaging - 12th International Workshop, {IWDM} 2014, Gifu City,
Japan, June 29 - July 2, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8539},
pages = {674--680},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07887-8\_93},
doi = {10.1007/978-3-319-07887-8\_93},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mammo/MertzanidouHDPLMKBH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/midp/BejnordiTOKL14,
author = {Babak Ehteshami Bejnordi and
Nadya Timofeeva and
Irene Otte{-}H{\"{o}}ller and
Nico Karssemeijer and
Jeroen A. W. M. van der Laak},
editor = {Metin N. Gurcan and
Anant Madabhushi},
title = {Quantitative analysis of stain variability in histology slides and
an algorithm for standardization},
booktitle = {Medical Imaging 2014: Digital Pathology, San Diego, California, United
States, 15-20 February 2014},
series = {{SPIE} Proceedings},
volume = {9041},
pages = {904108},
publisher = {{SPIE}},
year = {2014},
url = {https://doi.org/10.1117/12.2043683},
doi = {10.1117/12.2043683},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/midp/BejnordiTOKL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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