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ORCIDBibTeX records: Stefan Kurtz
@article{DBLP:journals/almob/HausmannK21,
author = {Fabian Hausmann and
Stefan Kurtz},
title = {DeepGRP: engineering a software tool for predicting genomic repetitive
elements using Recurrent Neural Networks with attention},
journal = {Algorithms Mol. Biol.},
volume = {16},
number = {1},
pages = {20},
year = {2021},
url = {https://doi.org/10.1186/s13015-021-00199-0},
doi = {10.1186/S13015-021-00199-0},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/almob/HausmannK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GonnellaNK19,
author = {Giorgio Gonnella and
Niklas Niehus and
Stefan Kurtz},
title = {GfaViz: flexible and interactive visualization of {GFA} sequence graphs},
journal = {Bioinform.},
volume = {35},
number = {16},
pages = {2853--2855},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/bty1046},
doi = {10.1093/BIOINFORMATICS/BTY1046},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GonnellaNK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GonnellaK17,
author = {Giorgio Gonnella and
Stefan Kurtz},
title = {GfaPy: a flexible and extensible software library for handling sequence
graphs in Python},
journal = {Bioinform.},
volume = {33},
number = {19},
pages = {3094--3095},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx398},
doi = {10.1093/BIOINFORMATICS/BTX398},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GonnellaK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jclinbioinf/MaderSK14,
author = {Malte Mader and
Ronald Simon and
Stefan Kurtz},
title = {{FISH} Oracle 2: a web server for integrative visualization of genomic
data in cancer research},
journal = {J. Clin. Bioinform.},
volume = {4},
pages = {5},
year = {2014},
url = {https://doi.org/10.1186/2043-9113-4-5},
doi = {10.1186/2043-9113-4-5},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jclinbioinf/MaderSK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeyerKB13,
author = {Fernando Meyer and
Stefan Kurtz and
Michael Beckstette},
title = {Fast online and index-based algorithms for approximate search of {RNA}
sequence-structure patterns},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {226},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-226},
doi = {10.1186/1471-2105-14-226},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeyerKB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GremmeSK13,
author = {Gordon Gremme and
Sascha Steinbiss and
Stefan Kurtz},
title = {GenomeTools: {A} Comprehensive Software Library for Efficient Processing
of Structured Genome Annotations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {10},
number = {3},
pages = {645--656},
year = {2013},
url = {https://doi.org/10.1109/TCBB.2013.68},
doi = {10.1109/TCBB.2013.68},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GremmeSK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GonnellaK12,
author = {Giorgio Gonnella and
Stefan Kurtz},
title = {Readjoiner: a fast and memory efficient string graph-based sequence
assembler},
journal = {{BMC} Bioinform.},
volume = {13},
pages = {82},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-82},
doi = {10.1186/1471-2105-13-82},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GonnellaK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SteinbissK12,
author = {Sascha Steinbiss and
Stefan Kurtz},
title = {A New Efficient Data Structure for Storage and Retrieval of Multiple
Biosequences},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {9},
number = {2},
pages = {345--357},
year = {2012},
url = {https://doi.org/10.1109/TCBB.2011.146},
doi = {10.1109/TCBB.2011.146},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SteinbissK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeyerKBWB11,
author = {Fernando Meyer and
Stefan Kurtz and
Rolf Backofen and
Sebastian Will and
Michael Beckstette},
title = {Structator: fast index-based search for {RNA} sequence-structure patterns},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {214},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-214},
doi = {10.1186/1471-2105-12-214},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeyerKBWB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jclinbioinf/MaderSSK11,
author = {Malte Mader and
Ronald Simon and
Sascha Steinbiss and
Stefan Kurtz},
title = {{FISH} Oracle: a web server for flexible visualization of {DNA} copy
number data in a genomic context},
journal = {J. Clin. Bioinform.},
volume = {1},
pages = {20},
year = {2011},
url = {https://doi.org/10.1186/2043-9113-1-20},
doi = {10.1186/2043-9113-1-20},
timestamp = {Thu, 02 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jclinbioinf/MaderSSK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/AlawiKB11,
author = {Malik Alawi and
Stefan Kurtz and
Michael Beckstette},
title = {CASSys: an integrated software-system for the interactive analysis
of ChIP-seq data},
journal = {J. Integr. Bioinform.},
volume = {8},
number = {2},
year = {2011},
url = {https://doi.org/10.2390/biecoll-jib-2011-155},
doi = {10.2390/BIECOLL-JIB-2011-155},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/AlawiKB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SteinbissGSMK09,
author = {Sascha Steinbiss and
Gordon Gremme and
Christin Sch{\"{a}}rfer and
Malte Mader and
Stefan Kurtz},
title = {\emph{AnnotationSketch}: a genome annotation drawing library},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {533--534},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn657},
doi = {10.1093/BIOINFORMATICS/BTN657},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SteinbissGSMK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeckstetteHGK09,
author = {Michael Beckstette and
Robert Homann and
Robert Giegerich and
Stefan Kurtz},
title = {Significant speedup of database searches with HMMs by search space
reduction with {PSSM} family models},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3251--3258},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp593},
doi = {10.1093/BIOINFORMATICS/BTP593},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BeckstetteHGK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/HoffmannOKSKVSH09,
author = {Steve Hoffmann and
Christian Otto and
Stefan Kurtz and
Cynthia M. Sharma and
Philipp Khaitovich and
J{\"{o}}rg Vogel and
Peter F. Stadler and
J{\"{o}}rg Hackerm{\"{u}}ller},
title = {Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions
Using Index Structures},
journal = {PLoS Comput. Biol.},
volume = {5},
number = {9},
year = {2009},
url = {https://doi.org/10.1371/journal.pcbi.1000502},
doi = {10.1371/JOURNAL.PCBI.1000502},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/HoffmannOKSKVSH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AbouelhodaKO08,
author = {Mohamed Ibrahim Abouelhoda and
Stefan Kurtz and
Enno Ohlebusch},
title = {CoCoNUT: an efficient system for the comparison and analysis of genomes},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-476},
doi = {10.1186/1471-2105-9-476},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/AbouelhodaKO08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EllinghausKW08,
author = {David Ellinghaus and
Stefan Kurtz and
Ute Willhoeft},
title = {\emph{LTRharvest}, an efficient and flexible software for \emph{de
novo }detection of {LTR} retrotransposons},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-18},
doi = {10.1186/1471-2105-9-18},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/EllinghausKW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HeroldKG08,
author = {Julia Herold and
Stefan Kurtz and
Robert Giegerich},
title = {Efficient computation of absent words in genomic sequences},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-167},
doi = {10.1186/1471-2105-9-167},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HeroldKG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/OhlebuschK08,
author = {Enno Ohlebusch and
Stefan Kurtz},
title = {Space Efficient Computation of Rare Maximal Exact Matches between
Multiple Sequences},
journal = {J. Comput. Biol.},
volume = {15},
number = {4},
pages = {357--377},
year = {2008},
url = {https://doi.org/10.1089/cmb.2007.0105},
doi = {10.1089/CMB.2007.0105},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/OhlebuschK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NielsenGZKDGBFHS07,
author = {Fiona G. G. Nielsen and
Stefan Gr{\"{a}}f and
Xinmin Zhang and
Stefan Kurtz and
Sergei Denissov and
Roland Green and
Ewan Birney and
Paul Flicek and
Martijn A. Huynen and
Henk Stunnenberg},
title = {Optimising oligonucleotide array design for ChIP-on-chip},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-8}},
year = {2007},
url = {http://www.biomedcentral.com/1471-2105/8/S8/P4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NielsenGZKDGBFHS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/GrafNKHBSF07,
author = {Stefan Gr{\"{a}}f and
Fiona G. G. Nielsen and
Stefan Kurtz and
Martijn A. Huynen and
Ewan Birney and
Henk Stunnenberg and
Paul Flicek},
title = {Optimized design and assessment of whole genome tiling arrays},
booktitle = {Proceedings 15th International Conference on Intelligent Systems for
Molecular Biology {(ISMB)} {\&} 6th European Conference on Computational
Biology (ECCB), Vienna, Austria, July 21-25, 2007},
pages = {195--204},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm200},
doi = {10.1093/BIOINFORMATICS/BTM200},
timestamp = {Sat, 07 Sep 2019 11:59:25 +0200},
biburl = {https://dblp.org/rec/conf/ismb/GrafNKHBSF07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BeckstetteHGK06,
author = {Michael Beckstette and
Robert Homann and
Robert Giegerich and
Stefan Kurtz},
title = {Fast index based algorithms and software for matching position specific
scoring matrices},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {389},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-389},
doi = {10.1186/1471-2105-7-389},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BeckstetteHGK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/infsof/GremmeBSK05,
author = {Gordon Gremme and
Volker Brendel and
Michael E. Sparks and
Stefan Kurtz},
title = {Engineering a software tool for gene structure prediction in higher
organisms},
journal = {Inf. Softw. Technol.},
volume = {47},
number = {15},
pages = {965--978},
year = {2005},
url = {https://doi.org/10.1016/j.infsof.2005.09.005},
doi = {10.1016/J.INFSOF.2005.09.005},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/infsof/GremmeBSK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/gcb/2005,
editor = {Andrew E. Torda and
Stefan Kurtz and
Matthias Rarey},
title = {Proceedings of the German Conference on Bioinformatics {(GCB} 2005),
Hamburg, Germany, October 5-7, 2005},
series = {{LNI}},
volume = {{P-71}},
publisher = {{GI}},
year = {2005},
url = {https://dl.gi.de/handle/20.500.12116/24920},
isbn = {3-88579-400-4},
timestamp = {Tue, 12 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gcb/2005.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChoudhuriSKG04,
author = {Jomuna V. Choudhuri and
Chris Schleiermacher and
Stefan Kurtz and
Robert Giegerich},
title = {GenAlyzer: interactive visualization of sequence similarities between
entire genomes},
journal = {Bioinform.},
volume = {20},
number = {12},
pages = {1964--1965},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth161},
doi = {10.1093/BIOINFORMATICS/BTH161},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChoudhuriSKG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jda/AbouelhodaKO04,
author = {Mohamed Ibrahim Abouelhoda and
Stefan Kurtz and
Enno Ohlebusch},
title = {Replacing suffix trees with enhanced suffix arrays},
journal = {J. Discrete Algorithms},
volume = {2},
number = {1},
pages = {53--86},
year = {2004},
url = {https://doi.org/10.1016/S1570-8667(03)00065-0},
doi = {10.1016/S1570-8667(03)00065-0},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jda/AbouelhodaKO04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KrugerSKG04,
author = {Jan Kr{\"{u}}ger and
Alexander Sczyrba and
Stefan Kurtz and
Robert Giegerich},
title = {e2g: an interactive web-based server for efficiently mapping large
{EST} and cDNA sets to genomic sequences},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Web-Server-Issue},
pages = {301--304},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh478},
doi = {10.1093/NAR/GKH478},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KrugerSKG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/BeckstetteSHGK04,
author = {Michael Beckstette and
Dirk Strothmann and
Robert Homann and
Robert Giegerich and
Stefan Kurtz},
editor = {Robert Giegerich and
Jens Stoye},
title = {\emph{PoSSuMsearch}: Fast and Sensitive Matching of Position Specific
Scoring Matrices using Enhanced Suffix Arrays},
booktitle = {Proceedings of the German Conference on Bioinformatics {(GCB} 2004),
Bielefeld, Germany, October 4-6, 2004},
series = {{LNI}},
volume = {{P-53}},
pages = {53--64},
publisher = {{GI}},
year = {2004},
url = {https://dl.gi.de/handle/20.500.12116/28676},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/BeckstetteSHGK04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/crc/KurtzL04,
author = {Stefan Kurtz and
Stefano Lonardi},
editor = {Dinesh P. Mehta and
Sartaj Sahni},
title = {Computational Biology},
booktitle = {Handbook of Data Structures and Applications},
publisher = {Chapman and Hall/CRC},
year = {2004},
url = {https://doi.org/10.1201/9781420035179.ch58},
doi = {10.1201/9781420035179.CH58},
timestamp = {Thu, 19 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/crc/KurtzL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ChainKOS03,
author = {Patrick S. G. Chain and
Stefan Kurtz and
Enno Ohlebusch and
Tom Slezak},
title = {An Applications-focused Review of Comparative Genomics Tools: Capabilities,
Limitations and Future Challenges},
journal = {Briefings Bioinform.},
volume = {4},
number = {2},
pages = {105--123},
year = {2003},
url = {https://doi.org/10.1093/bib/4.2.105},
doi = {10.1093/BIB/4.2.105},
timestamp = {Sun, 06 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ChainKOS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SczyrbaKMKG03,
author = {Alexander Sczyrba and
Jan Kr{\"{u}}ger and
Henning Mersch and
Stefan Kurtz and
Robert Giegerich},
title = {RNA-related tools on the Bielefeld Bioinformatics Server},
journal = {Nucleic Acids Res.},
volume = {31},
number = {13},
pages = {3767--3770},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg576},
doi = {10.1093/NAR/GKG576},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SczyrbaKMKG03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spe/GiegerichKS03,
author = {Robert Giegerich and
Stefan Kurtz and
Jens Stoye},
title = {Efficient implementation of lazy suffix trees},
journal = {Softw. Pract. Exp.},
volume = {33},
number = {11},
pages = {1035--1049},
year = {2003},
url = {https://doi.org/10.1002/spe.535},
doi = {10.1002/SPE.535},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/spe/GiegerichKS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/HochsmannTGK03,
author = {Matthias H{\"{o}}chsmann and
Thomas T{\"{o}}ller and
Robert Giegerich and
Stefan Kurtz},
title = {Local Similarity in {RNA} Secondary Structures},
booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
Stanford, CA, USA, August 11-14, 2003},
pages = {159--168},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CSB.2003.1227315},
doi = {10.1109/CSB.2003.1227315},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/HochsmannTGK03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pieee/FitchGKKMOSVZM02,
author = {J. Patrick Fitch and
Shea N. Gardner and
Thomas A. Kuczmarski and
Stefan Kurtz and
Rich Myers and
Linda L. Ott and
Thomas R. Slezak and
Elizabeth A. Vitalis and
Adam T. Zemla and
Paula M. McCready},
title = {Rapid development of nucleic acid diagnostics},
journal = {Proc. {IEEE}},
volume = {90},
number = {11},
pages = {1708--1721},
year = {2002},
url = {https://doi.org/10.1109/JPROC.2002.804680},
doi = {10.1109/JPROC.2002.804680},
timestamp = {Tue, 17 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pieee/FitchGKKMOSVZM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/HohlKO02,
author = {Michael H{\"{o}}hl and
Stefan Kurtz and
Enno Ohlebusch},
title = {Efficient multiple genome alignment},
booktitle = {Proceedings of the Tenth International Conference on Intelligent Systems
for Molecular Biology, August 3-7, 2002, Edmonton, Alberta, Canada},
pages = {312--320},
year = {2002},
timestamp = {Wed, 29 Jun 2011 14:55:41 +0200},
biburl = {https://dblp.org/rec/conf/ismb/HohlKO02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/spire/AbouelhodaOK02,
author = {Mohamed Ibrahim Abouelhoda and
Enno Ohlebusch and
Stefan Kurtz},
editor = {Alberto H. F. Laender and
Arlindo L. Oliveira},
title = {Optimal Exact Strring Matching Based on Suffix Arrays},
booktitle = {String Processing and Information Retrieval, 9th International Symposium,
{SPIRE} 2002, Lisbon, Portugal, September 11-13, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2476},
pages = {31--43},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45735-6\_4},
doi = {10.1007/3-540-45735-6\_4},
timestamp = {Mon, 26 Jun 2023 20:44:05 +0200},
biburl = {https://dblp.org/rec/conf/spire/AbouelhodaOK02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AbouelhodaKO02,
author = {Mohamed Ibrahim Abouelhoda and
Stefan Kurtz and
Enno Ohlebusch},
editor = {Roderic Guig{\'{o}} and
Dan Gusfield},
title = {The Enhanced Suffix Array and Its Applications to Genome Analysis},
booktitle = {Algorithms in Bioinformatics, Second International Workshop, {WABI}
2002, Rome, Italy, September 17-21, 2002, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {2452},
pages = {449--463},
publisher = {Springer},
year = {2002},
url = {https://doi.org/10.1007/3-540-45784-4\_35},
doi = {10.1007/3-540-45784-4\_35},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/AbouelhodaKO02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GrafSKS01,
author = {Stefan Gr{\"{a}}f and
Dirk Strothmann and
Stefan Kurtz and
Gerhard Steger},
title = {HyPaLib: a database of RNAs and {RNA} structural elements defined
by hybrid patterns},
journal = {Nucleic Acids Res.},
volume = {29},
number = {1},
pages = {196--198},
year = {2001},
url = {https://doi.org/10.1093/nar/29.1.196},
doi = {10.1093/NAR/29.1.196},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GrafSKS01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tc/BalkenholK00,
author = {Bernhard Balkenhol and
Stefan Kurtz},
title = {Universal Data Compression Based on the Burrows-Wheeler Transformation:
Theory and Practice},
journal = {{IEEE} Trans. Computers},
volume = {49},
number = {10},
pages = {1043--1053},
year = {2000},
url = {https://doi.org/10.1109/12.888040},
doi = {10.1109/12.888040},
timestamp = {Sat, 20 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tc/BalkenholK00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/KurtzOSSG00,
author = {Stefan Kurtz and
Enno Ohlebusch and
Chris Schleiermacher and
Jens Stoye and
Robert Giegerich},
editor = {Philip E. Bourne and
Michael Gribskov and
Russ B. Altman and
Nancy Jensen and
Debra A. Hope and
Thomas Lengauer and
Julie C. Mitchell and
Eric D. Scheeff and
Chris Smith and
Shawn Strande and
Helge Weissig},
title = {Computation and Visualization of Degenerate Repeats in Complete Genomes},
booktitle = {Proceedings of the Eighth International Conference on Intelligent
Systems for Molecular Biology, August 19-23, 2000, La Jolla / San
Diego, CA, {USA}},
pages = {228--238},
publisher = {{AAAI}},
year = {2000},
url = {http://www.aaai.org/Library/ISMB/2000/ismb00-024.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/KurtzOSSG00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KurtzS99,
author = {Stefan Kurtz and
Chris Schleiermacher},
title = {REPuter: fast computation of maximal repeats in complete genomes},
journal = {Bioinform.},
volume = {15},
number = {5},
pages = {426--427},
year = {1999},
url = {https://doi.org/10.1093/bioinformatics/15.5.426},
doi = {10.1093/BIOINFORMATICS/15.5.426},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KurtzS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spe/Kurtz99,
author = {Stefan Kurtz},
title = {Reducing the space requirement of suffix trees},
journal = {Softw. Pract. Exp.},
volume = {29},
number = {13},
pages = {1149--1171},
year = {1999},
url = {https://doi.org/10.1002/(SICI)1097-024X(199911)29:13\&\#60;1149::AID-SPE274\&\#62;3.0.CO;2-O},
doi = {10.1002/(SICI)1097-024X(199911)29:13\&\#60;1149::AID-SPE274\&\#62;3.0.CO;2-O},
timestamp = {Thu, 09 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/spe/Kurtz99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dcc/BalkenholKS99,
author = {Bernhard Balkenhol and
Stefan Kurtz and
Yuri M. Shtarkov},
title = {Modifications of the Burrows and Wheeler Data Compression Algorithm},
booktitle = {Data Compression Conference, {DCC} 1999, Snowbird, Utah, USA, March
29-31, 1999},
pages = {188--197},
publisher = {{IEEE} Computer Society},
year = {1999},
url = {https://doi.org/10.1109/DCC.1999.755668},
doi = {10.1109/DCC.1999.755668},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/dcc/BalkenholKS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wae/GiegerichKS99,
author = {Robert Giegerich and
Stefan Kurtz and
Jens Stoye},
editor = {Jeffrey Scott Vitter and
Christos D. Zaroliagis},
title = {Efficient Implementation of Lazy Suffix Trees},
booktitle = {Algorithm Engineering, 3rd International Workshop, {WAE} '99, London,
UK, July 19-21, 1999, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1668},
pages = {30--42},
publisher = {Springer},
year = {1999},
url = {https://doi.org/10.1007/3-540-48318-7\_5},
doi = {10.1007/3-540-48318-7\_5},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wae/GiegerichKS99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithmica/GiegerichK97,
author = {Robert Giegerich and
Stefan Kurtz},
title = {From Ukkonen to McCreight and Weiner: {A} Unifying View of Linear-Time
Suffix Tree Construction},
journal = {Algorithmica},
volume = {19},
number = {3},
pages = {331--353},
year = {1997},
url = {https://doi.org/10.1007/PL00009177},
doi = {10.1007/PL00009177},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/algorithmica/GiegerichK97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cpm/KurtzM97,
author = {Stefan Kurtz and
Gene Myers},
editor = {Alberto Apostolico and
Jotun Hein},
title = {Estimating the Probability of Approximate Matches},
booktitle = {Combinatorial Pattern Matching, 8th Annual Symposium, {CPM} 97, Aarhus,
Denmark, June 30 - July 2, 1997, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1264},
pages = {52--64},
publisher = {Springer},
year = {1997},
url = {https://doi.org/10.1007/3-540-63220-4\_49},
doi = {10.1007/3-540-63220-4\_49},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/cpm/KurtzM97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/dnb/Kurtz95,
author = {Stefan Kurtz},
title = {Fundamental algorithms for a declarative pattern matching system},
school = {Bielefeld University, Germany},
year = {1995},
url = {https://d-nb.info/947270965},
timestamp = {Sat, 17 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/dnb/Kurtz95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/scp/GiegerichK95,
author = {Robert Giegerich and
Stefan Kurtz},
title = {A Comparison of Imperative and Purely Functional Suffix Tree Constructions},
journal = {Sci. Comput. Program.},
volume = {25},
number = {2-3},
pages = {187--218},
year = {1995},
url = {https://doi.org/10.1016/0167-6423(95)00003-8},
doi = {10.1016/0167-6423(95)00003-8},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/scp/GiegerichK95.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/esop/GiegerichK94,
author = {Robert Giegerich and
Stefan Kurtz},
editor = {Donald Sannella},
title = {Suffix Trees in the Functional Programming Paradigm},
booktitle = {Programming Languages and Systems - ESOP'94, 5th European Symposium
on Programming, Edinburgh, UK, April 11-13, 1994, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {788},
pages = {225--240},
publisher = {Springer},
year = {1994},
url = {https://doi.org/10.1007/3-540-57880-3\_15},
doi = {10.1007/3-540-57880-3\_15},
timestamp = {Tue, 14 May 2019 10:00:41 +0200},
biburl = {https://dblp.org/rec/conf/esop/GiegerichK94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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