BibTeX records: Irina Kufareva

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@article{DBLP:journals/bmcbi/ChavezKKK23,
  author       = {Willow Carretero Chavez and
                  Marcus Krantz and
                  Edda Klipp and
                  Irina Kufareva},
  title        = {kboolnet: a toolkit for the verification, validation, and visualization
                  of reaction-contingency (rxncon) models},
  journal      = {{BMC} Bioinform.},
  volume       = {24},
  number       = {1},
  pages        = {246},
  year         = {2023},
  url          = {https://doi.org/10.1186/s12859-023-05329-6},
  doi          = {10.1186/S12859-023-05329-6},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/ChavezKKK23.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcamd/NicolaKIA20,
  author       = {George Nicola and
                  Irina Kufareva and
                  Andrey V. Ilatovskiy and
                  Ruben Abagyan},
  title        = {Druggable exosites of the human kino-pocketome},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {34},
  number       = {3},
  pages        = {219--230},
  year         = {2020},
  url          = {https://doi.org/10.1007/s10822-019-00276-y},
  doi          = {10.1007/S10822-019-00276-Y},
  timestamp    = {Sun, 04 Aug 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/NicolaKIA20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcisd/HusbyBKAC15,
  author       = {Jarmila Husby and
                  Giovanni Bottegoni and
                  Irina Kufareva and
                  Ruben Abagyan and
                  Andrea Cavalli},
  title        = {Structure-Based Predictions of Activity Cliffs},
  journal      = {J. Chem. Inf. Model.},
  volume       = {55},
  number       = {5},
  pages        = {1062--1076},
  year         = {2015},
  url          = {https://doi.org/10.1021/ci500742b},
  doi          = {10.1021/CI500742B},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcisd/HusbyBKAC15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcisd/GabrielsenKSWRKKANCSB14,
  author       = {Mari Gabrielsen and
                  Rafal Kurczab and
                  Agata Siwek and
                  Malgorzata Wolak and
                  Aina Westrheim Ravna and
                  Kurt Kristiansen and
                  Irina Kufareva and
                  Ruben Abagyan and
                  Gabriel Nowak and
                  Zdzislaw Chilmonczyk and
                  Ingebrigt Sylte and
                  Andrzej J. Bojarski},
  title        = {Identification of Novel Serotonin Transporter Compounds by Virtual
                  Screening},
  journal      = {J. Chem. Inf. Model.},
  volume       = {54},
  number       = {3},
  pages        = {933--943},
  year         = {2014},
  url          = {https://doi.org/10.1021/ci400742s},
  doi          = {10.1021/CI400742S},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/GabrielsenKSWRKKANCSB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/KufarevaIA12,
  author       = {Irina Kufareva and
                  Andrey V. Ilatovskiy and
                  Ruben Abagyan},
  title        = {Pocketome: an encyclopedia of small-molecule binding sites in 4D},
  journal      = {Nucleic Acids Res.},
  volume       = {40},
  number       = {Database-Issue},
  pages        = {535--540},
  year         = {2012},
  url          = {https://doi.org/10.1093/nar/gkr825},
  doi          = {10.1093/NAR/GKR825},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KufarevaIA12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcamd/GrigoryanKTA10,
  author       = {A. V. Grigoryan and
                  Irina Kufareva and
                  Maxim Totrov and
                  Ruben Abagyan},
  title        = {Spatial chemical distance based on atomic property fields},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {24},
  number       = {3},
  pages        = {173--182},
  year         = {2010},
  url          = {https://doi.org/10.1007/s10822-009-9316-x},
  doi          = {10.1007/S10822-009-9316-X},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/GrigoryanKTA10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcamd/ParkKA10,
  author       = {So{-}Jung Park and
                  Irina Kufareva and
                  Ruben Abagyan},
  title        = {Improved docking, screening and selectivity prediction for small molecule
                  nuclear receptor modulators using conformational ensembles},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {24},
  number       = {5},
  pages        = {459--471},
  year         = {2010},
  url          = {https://doi.org/10.1007/s10822-010-9362-4},
  doi          = {10.1007/S10822-010-9362-4},
  timestamp    = {Thu, 16 Apr 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcamd/ParkKA10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcamd/BottegoniKTA08,
  author       = {Giovanni Bottegoni and
                  Irina Kufareva and
                  Maxim Totrov and
                  Ruben Abagyan},
  title        = {A new method for ligand docking to flexible receptors by dual alanine
                  scanning and refinement {(SCARE)}},
  journal      = {J. Comput. Aided Mol. Des.},
  volume       = {22},
  number       = {5},
  pages        = {311--325},
  year         = {2008},
  url          = {https://doi.org/10.1007/s10822-008-9188-5},
  doi          = {10.1007/S10822-008-9188-5},
  timestamp    = {Wed, 07 Dec 2022 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcamd/BottegoniKTA08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcisd/LeeCKAFYY08,
  author       = {Hui Sun Lee and
                  Jiwon Choi and
                  Irina Kufareva and
                  Ruben Abagyan and
                  Anton V. Filikov and
                  Young Yang and
                  Sukjoon Yoon},
  title        = {Optimization of High Throughput Virtual Screening by Combining Shape-Matching
                  and Docking Methods},
  journal      = {J. Chem. Inf. Model.},
  volume       = {48},
  number       = {3},
  pages        = {489--497},
  year         = {2008},
  url          = {https://doi.org/10.1021/ci700376c},
  doi          = {10.1021/CI700376C},
  timestamp    = {Fri, 06 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcisd/LeeCKAFYY08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}