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ORCIDBibTeX records: Oliver Kohlbacher
@article{DBLP:journals/bmcbi/FigaschewskiSTK23,
author = {Mirjam Figaschewski and
Bilge S{\"{u}}r{\"{u}}n and
Thorsten Tiede and
Oliver Kohlbacher},
title = {The personalized cancer network explorer (PeCaX) as a visual analytics
tool to support molecular tumor boards},
journal = {{BMC} Bioinform.},
volume = {24},
number = {1},
pages = {88},
year = {2023},
url = {https://doi.org/10.1186/s12859-023-05194-3},
doi = {10.1186/S12859-023-05194-3},
timestamp = {Tue, 28 Mar 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/FigaschewskiSTK23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/KontouWAPSMNKW23,
author = {Eleftheria Kontou and
Axel Walter and
Oliver Alka and
Julianus Pfeuffer and
Timo Sachsenberg and
Omkar S. Mohite and
Matin Nuhamunada and
Oliver Kohlbacher and
Tilmann Weber},
title = {UmetaFlow: an untargeted metabolomics workflow for high-throughput
data processing and analysis},
journal = {J. Cheminformatics},
volume = {15},
number = {1},
pages = {52},
year = {2023},
url = {https://doi.org/10.1186/s13321-023-00724-w},
doi = {10.1186/S13321-023-00724-W},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/KontouWAPSMNKW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cordi/HoffmannMBBKTGE23,
author = {Nils Hoffmann and
Irena Maus and
Sebastian Beier and
Peter Belmann and
Jan Kr{\"{u}}ger and
Andreas Tauch and
Alexander Goesmann and
Roland Eils and
Peer Bork and
Oliver Kohlbacher and
Ursula Kummer and
Rolf Backofen and
Ivo Buchhalter and
Alexander Sczyrba},
editor = {York Sure{-}Vetter and
Carole A. Goble},
title = {Embedding the de.NBI Cloud in the National Research Data Infrastructure
Activities},
booktitle = {1st Conference on Research Data Infrastructure - Connecting Communities,
CoRDI 2023, Karlsruhe, Germany, September 12-14, 2023},
publisher = {{TIB} Open Publishing},
year = {2023},
url = {https://doi.org/10.52825/cordi.v1i.387},
doi = {10.52825/CORDI.V1I.387},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cordi/HoffmannMBBKTGE23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AkgunPK22,
author = {Mete Akg{\"{u}}n and
Nico Pfeifer and
Oliver Kohlbacher},
title = {Efficient privacy-preserving whole-genome variant queries},
journal = {Bioinform.},
volume = {38},
number = {8},
pages = {2202--2210},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btac070},
doi = {10.1093/BIOINFORMATICS/BTAC070},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AkgunPK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WinklerWFTNK22,
author = {Sebastian Winkler and
Ivana Winkler and
Mirjam Figaschewski and
Thorsten Tiede and
Alfred Nordheim and
Oliver Kohlbacher},
title = {De novo identification of maximally deregulated subnetworks based
on multi-omics data with DeRegNet},
journal = {{BMC} Bioinform.},
volume = {23},
number = {1},
pages = {139},
year = {2022},
url = {https://doi.org/10.1186/s12859-022-04670-6},
doi = {10.1186/S12859-022-04670-6},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WinklerWFTNK22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/ProkoschBBEFGHH22,
author = {Hans{-}Ulrich Prokosch and
Thomas Bahls and
Martin Bialke and
J{\"{u}}rgen Eils and
Christian Fegeler and
Julian Gr{\"{u}}ndner and
Birger Haarbrandt and
Christopher Hampf and
Wolfgang Hoffmann and
Hauke Hund and
Marvin O. Kampf and
Lorenz A. Kapsner and
Piotr Kasprzak and
Oliver Kohlbacher and
Dagmar Krefting and
Jonathan Mang and
Michael Marschollek and
Sebastian Mate and
Armin M{\"{u}}ller and
Fabian Prasser and
Julian Sass and
Sebastian C. Semler and
Holger Stenzhorn and
Sylvia Thun and
Sven Zenker and
Roland Eils},
editor = {Brigitte S{\'{e}}roussi and
Patrick Weber and
Ferdinand Dhombres and
Cyril Grouin and
Jan{-}David Liebe and
Sylvia Pelayo and
Andrea Pinna and
Bastien Rance and
Lucia Sacchi and
Adrien Ugon and
Arriel Benis and
Parisis Gallos},
title = {The {COVID-19} Data Exchange Platform of the German University Medicine},
booktitle = {Challenges of Trustable {AI} and Added-Value on Health - Proceedings
of {MIE} 2022, Medical Informatics Europe, Nice, France, May 27-30,
2022},
series = {Studies in Health Technology and Informatics},
volume = {294},
pages = {674--678},
publisher = {{IOS} Press},
year = {2022},
url = {https://doi.org/10.3233/SHTI220554},
doi = {10.3233/SHTI220554},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/mie/ProkoschBBEFGHH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2212-03481,
author = {Marius de Arruda Botelho Herr and
Michael Graf and
Peter Placzek and
Florian K{\"{o}}nig and
Felix B{\"{o}}tte and
Tyra Stickel and
David Hieber and
Lukas Zimmermann and
Michael Slupina and
Christopher Mohr and
Stephanie Biergans and
Mete Akg{\"{u}}n and
Nico Pfeifer and
Oliver Kohlbacher},
title = {Bringing the Algorithms to the Data - Secure Distributed Medical Analytics
using the Personal Health Train (PHT-meDIC)},
journal = {CoRR},
volume = {abs/2212.03481},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2212.03481},
doi = {10.48550/ARXIV.2212.03481},
eprinttype = {arXiv},
eprint = {2212.03481},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2212-03481.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AkgunUEPK21,
author = {Mete Akg{\"{u}}n and
Ali Burak {\"{U}}nal and
Bekir Erg{\"{u}}ner and
Nico Pfeifer and
Oliver Kohlbacher},
title = {Identifying disease-causing mutations with privacy protection},
journal = {Bioinform.},
volume = {36},
number = {21},
pages = {5205--5213},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btaa641},
doi = {10.1093/BIOINFORMATICS/BTAA641},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AkgunUEPK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SurunSDHTZBK20,
author = {Bilge S{\"{u}}r{\"{u}}n and
Charlotta P. I. Sch{\"{a}}rfe and
Mathew R. Divine and
Julian Heinrich and
Nora C. Toussaint and
Lukas Zimmermann and
Janina Beha and
Oliver Kohlbacher},
title = {ClinVAP: a reporting strategy from variants to therapeutic options},
journal = {Bioinform.},
volume = {36},
number = {7},
pages = {2316--2317},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btz924},
doi = {10.1093/BIOINFORMATICS/BTZ924},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SurunSDHTZBK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/GleimKZKSDB20,
author = {Lars Christoph Gleim and
Md. Rezaul Karim and
Lukas Zimmermann and
Oliver Kohlbacher and
Holger Stenzhorn and
Stefan Decker and
Oya Beyan},
title = {Enabling ad-hoc reuse of private data repositories through schema
extraction},
journal = {J. Biomed. Semant.},
volume = {11},
number = {1},
pages = {6},
year = {2020},
url = {https://doi.org/10.1186/s13326-020-00223-z},
doi = {10.1186/S13326-020-00223-Z},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/GleimKZKSDB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dint/BeyanCSKZSKDDSD20,
author = {Oya Beyan and
Ananya Choudhury and
Johan van Soest and
Oliver Kohlbacher and
Lukas Zimmermann and
Holger Stenzhorn and
Md. Rezaul Karim and
Michel Dumontier and
Stefan Decker and
Luiz Olavo Bonino da Silva Santos and
Andre Dekker},
title = {Distributed Analytics on Sensitive Medical Data: The Personal Health
Train},
journal = {Data Intell.},
volume = {2},
number = {1-2},
pages = {96--107},
year = {2020},
url = {https://doi.org/10.1162/dint\_a\_00032},
doi = {10.1162/DINT\_A\_00032},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dint/BeyanCSKZSKDDSD20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchneiderKTGBMS19,
author = {Lara Schneider and
Tim Kehl and
Kristina Thedinga and
Nadja Liddy Grammes and
Christina Backes and
Christopher Mohr and
Benjamin Schubert and
Kerstin Lenhof and
Nico Gerstner and
Andreas Daniel Hartkopf and
Markus Wallwiener and
Oliver Kohlbacher and
Andreas Keller and
Eckart Meese and
Norbert M. Graf and
Hans{-}Peter Lenhof},
title = {ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment
stratification},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5171--5181},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz302},
doi = {10.1093/BIOINFORMATICS/BTZ302},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchneiderKTGBMS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/TiedeK19,
author = {Thorsten Tiede and
Oliver Kohlbacher},
title = {Biological Network Knowledge in Molecular Tumor Boards},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t007-1.4573510/t007-1.4573511/3202476-1.4573638/3203073-1.4573635},
timestamp = {Wed, 17 Apr 2024 11:47:08 +0200},
biburl = {https://dblp.org/rec/conf/amia/TiedeK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/HanussekB0K19,
author = {Maximilian Hanussek and
Felix Bartusch and
Jens Kr{\"{u}}ger and
Oliver Kohlbacher},
title = {{BOOTABLE:} Bioinformatics Benchmark Tool Suite},
booktitle = {19th {IEEE/ACM} International Symposium on Cluster, Cloud and Grid
Computing, {CCGRID} 2019, Larnaca, Cyprus, May 14-17, 2019},
pages = {157--160},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/CCGRID.2019.00027},
doi = {10.1109/CCGRID.2019.00027},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/HanussekB0K19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/BartuschH0K19,
author = {Felix Bartusch and
Maximilian Hanussek and
Jens Kr{\"{u}}ger and
Oliver Kohlbacher},
title = {Reproducible Scientific Workflows for High Performance and Cloud Computing},
booktitle = {19th {IEEE/ACM} International Symposium on Cluster, Cloud and Grid
Computing, {CCGRID} 2019, Larnaca, Cyprus, May 14-17, 2019},
pages = {161--164},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/CCGRID.2019.00028},
doi = {10.1109/CCGRID.2019.00028},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/BartuschH0K19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/WibbergBBBGGHKRRSSTTUK19,
author = {Daniel Wibberg and
B{\'{e}}r{\'{e}}nice Batut and
Peter Belmann and
Jochen Blom and
Frank Oliver Gl{\"{o}}ckner and
Bj{\"{o}}rn A. Gr{\"{u}}ning and
Nils Hoffmann and
Nils Kleinb{\"{o}}lting and
Ren{\'{e}} Rahn and
Maja Rey and
Uwe Scholz and
Malvika Sharan and
Andreas Tauch and
Ulrike Trojahn and
Bj{\"{o}}rn Usadel and
Oliver Kohlbacher},
title = {The de.NBI / {ELIXIR-DE} training platform - Bioinformatics training
in Germany and across Europe within {ELIXIR}},
journal = {F1000Research},
volume = {8},
pages = {1877},
year = {2019},
url = {https://doi.org/10.12688/f1000research.20244.1},
doi = {10.12688/F1000RESEARCH.20244.1},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/WibbergBBBGGHKRRSSTTUK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SchubertSDHMK18,
author = {Benjamin Schubert and
Charlotta Sch{\"{a}}rfe and
Pierre D{\"{o}}nnes and
Thomas A. Hopf and
Debora S. Marks and
Oliver Kohlbacher},
title = {Population-specific design of de-immunized protein biotherapeutics},
journal = {PLoS Comput. Biol.},
volume = {14},
number = {3},
year = {2018},
url = {https://doi.org/10.1371/journal.pcbi.1005983},
doi = {10.1371/JOURNAL.PCBI.1005983},
timestamp = {Sat, 25 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/SchubertSDHMK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/FriedrichGKN18,
author = {Andreas Friedrich and
Luis de la Garza and
Oliver Kohlbacher and
Sven Nahnsen},
editor = {S{\"{o}}ren Auer and
Maria{-}Esther Vidal},
title = {Interactive Visualization for Large-Scale Multi-factorial Research
Designs},
booktitle = {Data Integration in the Life Sciences - 13th International Conference,
{DILS} 2018, Hannover, Germany, November 20-21, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11371},
pages = {75--84},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-06016-9\_7},
doi = {10.1007/978-3-030-06016-9\_7},
timestamp = {Tue, 16 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dils/FriedrichGKN18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/HalfmannSGKO18,
author = {Marc Halfmann and
Holger Stenzhorn and
Peter Gerjets and
Oliver Kohlbacher and
Uwe Oestermeier},
editor = {S{\"{o}}ren Auer and
Maria{-}Esther Vidal},
title = {User-Driven Development of a Novel Molecular Tumor Board Support Tool},
booktitle = {Data Integration in the Life Sciences - 13th International Conference,
{DILS} 2018, Hannover, Germany, November 20-21, 2018, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11371},
pages = {195--199},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-06016-9\_18},
doi = {10.1007/978-3-030-06016-9\_18},
timestamp = {Tue, 16 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dils/HalfmannSGKO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/KarimNZKLMSKDB18,
author = {Md. Rezaul Karim and
Binh{-}Phi Nguyen and
Lukas Zimmermann and
Toralf Kirsten and
Matthias L{\"{o}}be and
Frank A. Meineke and
Holger Stenzhorn and
Oliver Kohlbacher and
Stefan Decker and
Oya Beyan},
editor = {Andra Waagmeester and
Christopher J. O. Baker and
Andrea Splendiani and
Oya Deniz Beyan and
M. Scott Marshall},
title = {A distributed analytics platform to execute {FHIR} based phenotyping
algorithms},
booktitle = {Proceedings of the 11th International Conference Semantic Web Applications
and Tools for Life Sciences, {SWAT4LS} 2018, Antwerp, Belgium, December
3-6, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2275},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2275/paper8.pdf},
timestamp = {Thu, 01 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/swat4ls/KarimNZKLMSKDB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChevretteAKCM17,
author = {Marc G. Chevrette and
Fabian Aicheler and
Oliver Kohlbacher and
Cameron R. Currie and
Marnix H. Medema},
title = {{SANDPUMA:} ensemble predictions of nonribosomal peptide chemistry
reveal biosynthetic diversity across Actinobacteria},
journal = {Bioinform.},
volume = {33},
number = {20},
pages = {3202--3210},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx400},
doi = {10.1093/BIOINFORMATICS/BTX400},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChevretteAKCM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchubertGMWK17,
author = {Benjamin Schubert and
Luis de la Garza and
Christopher Mohr and
Mathias Walzer and
Oliver Kohlbacher},
title = {ImmunoNodes - graphical development of complex immunoinformatics workflows},
journal = {{BMC} Bioinform.},
volume = {18},
number = {1},
pages = {242:1--242:7},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1667-z},
doi = {10.1186/S12859-017-1667-Z},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SchubertGMWK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/giots/HeimgaertnerHKM17,
author = {Florian Heimgaertner and
Stefan Hettich and
Oliver Kohlbacher and
Michael Menth},
title = {Scaling home automation to public buildings: {A} distributed multiuser
setup for OpenHAB 2},
booktitle = {Global Internet of Things Summit, GIoTS 2017, Geneva, Switzerland,
June 6-9, 2017},
pages = {1--6},
publisher = {{IEEE}},
year = {2017},
url = {https://doi.org/10.1109/GIOTS.2017.8016235},
doi = {10.1109/GIOTS.2017.8016235},
timestamp = {Wed, 16 Oct 2019 14:14:50 +0200},
biburl = {https://dblp.org/rec/conf/giots/HeimgaertnerHKM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwsg/HanussekB0K17,
author = {Maximilian Hanussek and
Felix Bartusch and
Jens Kr{\"{u}}ger and
Oliver Kohlbacher},
editor = {Sandra Gesing and
Krzysztof Kurowski and
Tam{\'{a}}s Kiss},
title = {Efficient Mass Spectra Prediction through Container Orchestration
with a Scientific Workflow},
booktitle = {Proceedings of the 9th International Workshop on Science Gateways,
Pozna{\'{n}}, Poland, 19-21 June, 2017},
series = {{CEUR} Workshop Proceedings},
volume = {2363},
publisher = {CEUR-WS.org},
year = {2017},
url = {https://ceur-ws.org/Vol-2363/paper6.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:48 +0100},
biburl = {https://dblp.org/rec/conf/iwsg/HanussekB0K17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/SchubertSDHMK17,
author = {Benjamin Schubert and
Charlotta Sch{\"{a}}rfe and
Pierre D{\"{o}}nnes and
Thomas A. Hopf and
Debora S. Marks and
Oliver Kohlbacher},
title = {Population-specific design of de-immunized protein biotherapeutics},
journal = {CoRR},
volume = {abs/1706.09083},
year = {2017},
url = {http://arxiv.org/abs/1706.09083},
eprinttype = {arXiv},
eprint = {1706.09083},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/SchubertSDHMK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/RijswijkBCCADEG17,
author = {Merlijn N. van Rijswijk and
Charlie Beirnaert and
Christophe Caron and
Marta Cascante and
Victoria Dominguez Del Angel and
Warwick B. Dunn and
Timothy M. D. Ebbels and
Franck Giacomoni and
Alejandra N. Gonz{\'{a}}lez{-}Beltr{\'{a}}n and
Thomas Hankemeier and
Kenneth Haug and
Jose L. Izquierdo{-}Garc{\'{\i}}a and
Rafael C. Jim{\'{e}}nez and
Fabien Jourdan and
Namrata Kale and
Maria I. Klapa and
Oliver Kohlbacher and
Kairi Koort and
Kim Kultima and
Gildas Le Corguill{\'{e}} and
Nicholas K. Moschonas and
Steffen Neumann and
Claire O'Donovan and
Martin Reczko and
Philippe Rocca{-}Serra and
Antonio Rosato and
Reza M. Salek and
Susanna{-}Assunta Sansone and
Venkata P. Satagopam and
Daniel Schober and
Ruth Shimmo and
Rachel A. Spicer and
Ola Spjuth and
Etienne A. Th{\'{e}}venot and
Mark R. Viant and
Ralf J. M. Weber and
Egon L. Willighagen and
Gianluigi Zanetti and
Christoph Steinbeck},
title = {The future of metabolomics in {ELIXIR}},
journal = {F1000Research},
volume = {6},
pages = {1649},
year = {2017},
url = {https://doi.org/10.12688/f1000research.12342.1},
doi = {10.12688/F1000RESEARCH.12342.1},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/RijswijkBCCADEG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/MohrFWKPCCKN17,
author = {Christopher Mohr and
Andreas Friedrich and
David Wojnar and
Erhan Kenar and
Aydin Can Polatkan and
Marius Cosmin Codrea and
Stefan Czemmel and
Oliver Kohlbacher and
Sven Nahnsen},
title = {qPortal - {A} science gateway for biomedical applications},
journal = {PeerJ Prepr.},
volume = {5},
pages = {e2839},
year = {2017},
url = {https://doi.org/10.7287/peerj.preprints.2839v1},
doi = {10.7287/PEERJ.PREPRINTS.2839V1},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerjpre/MohrFWKPCCKN17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/GarzaAK17,
author = {Luis de la Garza and
Fabian Aicheler and
Oliver Kohlbacher},
title = {From the desktop to the grid and cloud: conversion of {KNIME} workflows
to {WS-PGRADE}},
journal = {PeerJ Prepr.},
volume = {5},
pages = {e2849},
year = {2017},
url = {https://doi.org/10.7287/peerj.preprints.2849v1},
doi = {10.7287/PEERJ.PREPRINTS.2849V1},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerjpre/GarzaAK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MuellerBGBKMKMK16,
author = {Sabine C. Mueller and
Christina Backes and
Alexander Gre{\ss} and
Nina Baumgarten and
Olga V. Kalinina and
Andreas Moll and
Oliver Kohlbacher and
Eckart Meese and
Andreas Keller},
title = {BALL-SNPgp - from genetic variants toward computational diagnostics},
journal = {Bioinform.},
volume = {32},
number = {12},
pages = {1888--1890},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw084},
doi = {10.1093/BIOINFORMATICS/BTW084},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MuellerBGBKMKMK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchubertWBSMK16,
author = {Benjamin Schubert and
Mathias Walzer and
Hans{-}Philipp Brachvogel and
Andr{\'{a}}s Szolek and
Christopher Mohr and
Oliver Kohlbacher},
title = {{FRED} 2: an immunoinformatics framework for Python},
journal = {Bioinform.},
volume = {32},
number = {13},
pages = {2044--2046},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btw113},
doi = {10.1093/BIOINFORMATICS/BTW113},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchubertWBSMK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GarzaVSRAGRK16,
author = {Luis de la Garza and
Johannes Veit and
Andr{\'{a}}s Szolek and
Marc R{\"{o}}ttig and
Stephan Aiche and
Sandra Gesing and
Knut Reinert and
Oliver Kohlbacher},
title = {From the desktop to the grid: scalable bioinformatics via workflow
conversion},
journal = {{BMC} Bioinform.},
volume = {17},
pages = {127},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-0978-9},
doi = {10.1186/S12859-016-0978-9},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GarzaVSRAGRK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/BreckelsHWMCGTK16,
author = {Lisa M. Breckels and
Sean B. Holden and
David Wojnar and
Claire M. Mulvey and
Andy Christoforou and
Arnoud Groen and
Matthew W. B. Trotter and
Oliver Kohlbacher and
Kathryn S. Lilley and
Laurent Gatto},
title = {Learning from Heterogeneous Data Sources: An Application in Spatial
Proteomics},
journal = {PLoS Comput. Biol.},
volume = {12},
number = {5},
year = {2016},
url = {https://doi.org/10.1371/journal.pcbi.1004920},
doi = {10.1371/JOURNAL.PCBI.1004920},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/BreckelsHWMCGTK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwsg/GarzaAK16,
author = {Luis de la Garza and
Fabian Aicheler and
Oliver Kohlbacher},
editor = {Sandra Gesing and
Jens Kr{\"{u}}ger},
title = {From the Desktop to the Grid and Cloud: Conversion of {KNIME} Workflows
to {WS-PGRADE}},
booktitle = {Proceedings of the 8th International Workshop on Science Gateways,
{IWSG} 2016, Rome, Italy, June 8-10, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1871},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1871/paper10.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:48 +0100},
biburl = {https://dblp.org/rec/conf/iwsg/GarzaAK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerjpre/KrugerK16,
author = {Jens Kr{\"{u}}ger and
Oliver Kohlbacher},
title = {Containerization and wrapping of a mass spectra prediction workflow},
journal = {PeerJ Prepr.},
volume = {4},
pages = {e2528},
year = {2016},
url = {https://doi.org/10.7287/peerj.preprints.2528v1},
doi = {10.7287/PEERJ.PREPRINTS.2528V1},
timestamp = {Thu, 09 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/peerjpre/KrugerK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HildebrandtSFG0NRSSTLKH15,
author = {Anna Katharina Hildebrandt and
Daniel St{\"{o}}ckel and
Nina M. Fischer and
Luis de la Garza and
Jens Kr{\"{u}}ger and
Stefan Nickels and
Marc R{\"{o}}ttig and
Charlotta Sch{\"{a}}rfe and
Marcel Schumann and
Philipp Thiel and
Hans{-}Peter Lenhof and
Oliver Kohlbacher and
Andreas Hildebrandt},
title = {ballaxy: web services for structural bioinformatics},
journal = {Bioinform.},
volume = {31},
number = {1},
pages = {121--122},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu574},
doi = {10.1093/BIOINFORMATICS/BTU574},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HildebrandtSFG0NRSSTLKH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SimhaBKS15,
author = {Ramanuja Simha and
Sebastian Briesemeister and
Oliver Kohlbacher and
Hagit Shatkay},
title = {Protein (multi-)location prediction: utilizing interdependencies via
a generative model},
journal = {Bioinform.},
volume = {31},
number = {12},
pages = {365--374},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv264},
doi = {10.1093/BIOINFORMATICS/BTV264},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SimhaBKS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchubertBJK15,
author = {Benjamin Schubert and
Hans{-}Philipp Brachvogel and
Christopher J{\"{u}}rges and
Oliver Kohlbacher},
title = {EpiToolKit - a web-based workbench for vaccine design},
journal = {Bioinform.},
volume = {31},
number = {13},
pages = {2211--2213},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv116},
doi = {10.1093/BIOINFORMATICS/BTV116},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchubertBJK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/it/GeraschKNS0KL15,
author = {Andreas Gerasch and
Jan K{\"{u}}ntzer and
Peter Niermann and
Daniel St{\"{o}}ckel and
Michael Kaufmann and
Oliver Kohlbacher and
Hans{-}Peter Lenhof},
title = {Network-based interactive navigation and analysis of large biological
datasets},
journal = {it Inf. Technol.},
volume = {57},
number = {1},
pages = {37--48},
year = {2015},
url = {https://doi.org/10.1515/itit-2014-1076},
doi = {10.1515/ITIT-2014-1076},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/it/GeraschKNS0KL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dagstuhl-reports/AebersoldKV15,
author = {Rudolf Aebersold and
Oliver Kohlbacher and
Olga Vitek},
title = {Computational Mass Spectrometry (Dagstuhl Seminar 15351)},
journal = {Dagstuhl Reports},
volume = {5},
number = {8},
pages = {9--33},
year = {2015},
url = {https://doi.org/10.4230/DagRep.5.8.9},
doi = {10.4230/DAGREP.5.8.9},
timestamp = {Wed, 07 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dagstuhl-reports/AebersoldKV15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SzolekSMSFK14,
author = {Andr{\'{a}}s Szolek and
Benjamin Schubert and
Christopher Mohr and
Marc Sturm and
Magdalena Feldhahn and
Oliver Kohlbacher},
title = {OptiType: precision {HLA} typing from next-generation sequencing data},
journal = {Bioinform.},
volume = {30},
number = {23},
pages = {3310--3316},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu548},
doi = {10.1093/BIOINFORMATICS/BTU548},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SzolekSMSFK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/ThielSOK14,
author = {Philipp Thiel and
Lisa Sach{-}Peltason and
Christian Ottmann and
Oliver Kohlbacher},
title = {Blocked Inverted Indices for Exact Clustering of Large Chemical Spaces},
journal = {J. Chem. Inf. Model.},
volume = {54},
number = {9},
pages = {2395--2401},
year = {2014},
url = {https://doi.org/10.1021/ci500150t},
doi = {10.1021/CI500150T},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/ThielSOK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/apvis/GeraschKK14,
author = {Andreas Gerasch and
Michael Kaufmann and
Oliver Kohlbacher},
editor = {Issei Fujishiro and
Ulrik Brandes and
Hans Hagen and
Shigeo Takahashi},
title = {Rebuilding {KEGG} Maps: Algorithms and Benefits},
booktitle = {{IEEE} Pacific Visualization Symposium, PacificVis 2014, Yokohama,
Japan, March 4-7, 2014},
pages = {97--104},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/PacificVis.2014.45},
doi = {10.1109/PACIFICVIS.2014.45},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/apvis/GeraschKK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/PackschiesBBBBVFGGHK0KLMSSSWZ13,
author = {Lars Packschies and
Georg Birkenheuer and
Dirk Blunk and
Sebastian Breuers and
Andr{\'{e}} Brinkmann and
Ines dos Santos Vieira and
Gregor Fels and
Sandra Gesing and
Richard Grunzke and
Sonja Herres{-}Pawlis and
Oliver Kohlbacher and
Jens Kr{\"{u}}ger and
Martin Kruse and
Ulrich Lang and
Ralph M{\"{u}}ller{-}Pfefferkorn and
Patrick Sch{\"{a}}fer and
Tobias Schlemmer and
Thomas Steinke and
Klaus{-}Dieter Warzecha and
Andreas Zink},
title = {The MoSGrid - e-science gateway: molecular simulations in a distributed
computing environment},
journal = {J. Cheminformatics},
volume = {5},
number = {{S-1}},
pages = {3},
year = {2013},
url = {https://doi.org/10.1186/1758-2946-5-S1-O3},
doi = {10.1186/1758-2946-5-S1-O3},
timestamp = {Mon, 11 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/PackschiesBBBBVFGGHK0KLMSSSWZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/ScharfeTRF0WK13,
author = {Charlotta Sch{\"{a}}rfe and
Joachim Taeger and
Peggy Reuter and
Nina M. Fischer and
Jens Kr{\"{u}}ger and
Bernd Wissinger and
Oliver Kohlbacher},
title = {Development of a pharmacorphore model for pharmacological chaperones
targeting mutant trafficking-deficient {CNG} channels},
journal = {J. Cheminformatics},
volume = {5},
number = {{S-1}},
pages = {18},
year = {2013},
url = {https://doi.org/10.1186/1758-2946-5-S1-O18},
doi = {10.1186/1758-2946-5-S1-O18},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/ScharfeTRF0WK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/ThielPOK13,
author = {Philipp Thiel and
Lisa Peltason and
Christian Ottmann and
Oliver Kohlbacher},
title = {Deterministic clustering of the available chemical space},
journal = {J. Cheminformatics},
volume = {5},
number = {{S-1}},
pages = {53},
year = {2013},
url = {https://doi.org/10.1186/1758-2946-5-S1-P53},
doi = {10.1186/1758-2946-5-S1-P53},
timestamp = {Thu, 14 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/ThielPOK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/NovakSHSK13,
author = {Jir{\'{\i}} Nov{\'{a}}k and
Timo Sachsenberg and
David Hoksza and
Tom{\'{a}}s Skopal and
Oliver Kohlbacher},
title = {On Comparison of SimTandem with State-of-the-Art Peptide Identification
Tools, Efficiency of Precursor Mass Filter and Dealing with Variable
Modifications},
journal = {J. Integr. Bioinform.},
volume = {10},
number = {3},
year = {2013},
url = {https://doi.org/10.2390/biecoll-jib-2013-228},
doi = {10.2390/BIECOLL-JIB-2013-228},
timestamp = {Sat, 18 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/NovakSHSK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/KohlbacherSW13,
author = {Oliver Kohlbacher and
Falk Schreiber and
Matthew O. Ward},
editor = {Andreas Kerren and
Helen C. Purchase and
Matthew O. Ward},
title = {Multivariate Networks in the Life Sciences},
booktitle = {Multivariate Network Visualization - Dagstuhl Seminar {\#}13201, Dagstuhl
Castle, Germany, May 12-17, 2013, Revised Discussions},
series = {Lecture Notes in Computer Science},
volume = {8380},
pages = {61--73},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-319-06793-3\_4},
doi = {10.1007/978-3-319-06793-3\_4},
timestamp = {Tue, 21 Mar 2023 21:00:28 +0100},
biburl = {https://dblp.org/rec/conf/dagstuhl/KohlbacherSW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/RobertsYKWZ13,
author = {Jonathan C. Roberts and
Jing Yang and
Oliver Kohlbacher and
Matthew O. Ward and
Michelle X. Zhou},
editor = {Andreas Kerren and
Helen C. Purchase and
Matthew O. Ward},
title = {Novel Visual Metaphors for Multivariate Networks},
booktitle = {Multivariate Network Visualization - Dagstuhl Seminar {\#}13201, Dagstuhl
Castle, Germany, May 12-17, 2013, Revised Discussions},
series = {Lecture Notes in Computer Science},
volume = {8380},
pages = {127--150},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-319-06793-3\_7},
doi = {10.1007/978-3-319-06793-3\_7},
timestamp = {Fri, 19 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/RobertsYKWZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwsg/Garza0SRARK13,
author = {Luis de la Garza and
Jens Kr{\"{u}}ger and
Charlotta Sch{\"{a}}rfe and
Marc R{\"{o}}ttig and
Stephan Aiche and
Knut Reinert and
Oliver Kohlbacher},
editor = {Tam{\'{a}}s Kiss},
title = {From the Desktop to the Grid: conversion of {KNIME} Workflows to gUSE},
booktitle = {Proceedings of the 5th International Workshop on Science Gateways,
Zurich, Switzerland, 3-5 June, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {993},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-993/paper9.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:48 +0100},
biburl = {https://dblp.org/rec/conf/iwsg/Garza0SRARK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pacbb/NovakSHSK13,
author = {Jir{\'{\i}} Nov{\'{a}}k and
Timo Sachsenberg and
David Hoksza and
Tom{\'{a}}s Skopal and
Oliver Kohlbacher},
editor = {Mohd Saberi Mohamad and
Loris Nanni and
Miguel P. Rocha and
Florentino Fdez{-}Riverola},
title = {A Statistical Comparison of SimTandem with State-of-the-Art Peptide
Identification Tools},
booktitle = {7th International Conference on Practical Applications of Computational
Biology {\&} Bioinformatics, {PACBB} 2013, 22-14 May, 2013, Salamanca,
Spain},
series = {Advances in Intelligent Systems and Computing},
volume = {222},
pages = {101--109},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-319-00578-2\_14},
doi = {10.1007/978-3-319-00578-2\_14},
timestamp = {Wed, 12 Oct 2022 08:58:54 +0200},
biburl = {https://dblp.org/rec/conf/pacbb/NovakSHSK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dagstuhl-reports/AebersoldKV13,
author = {Ruedi Aebersold and
Oliver Kohlbacher and
Olga Vitek},
title = {Computational Mass Spectrometry (Dagstuhl Seminar 13491)},
journal = {Dagstuhl Reports},
volume = {3},
number = {12},
pages = {1--16},
year = {2013},
url = {https://doi.org/10.4230/DagRep.3.12.1},
doi = {10.4230/DAGREP.3.12.1},
timestamp = {Wed, 07 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/dagstuhl-reports/AebersoldKV13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NahnsenK12,
author = {Sven Nahnsen and
Oliver Kohlbacher},
title = {In silico design of targeted SRM-based experiments},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-16}},
pages = {S8},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S16-S8},
doi = {10.1186/1471-2105-13-S16-S8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NahnsenK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/grid/GesingG0BWSSSHBBKFPKBSBFMJK12,
author = {Sandra Gesing and
Richard Grunzke and
Jens Kr{\"{u}}ger and
Georg Birkenheuer and
Martin Wewior and
Patrick Sch{\"{a}}fer and
Bernd Schuller and
Johannes Schuster and
Sonja Herres{-}Pawlis and
Sebastian Breuers and
{\'{A}}kos Balask{\'{o}} and
Miklos Kozlovszky and
Anna Szikszay Fabri and
Lars Packschies and
P{\'{e}}ter Kacsuk and
Dirk Blunk and
Thomas Steinke and
Andr{\'{e}} Brinkmann and
Gregor Fels and
Ralph M{\"{u}}ller{-}Pfefferkorn and
Ren{\'{e}} J{\"{a}}kel and
Oliver Kohlbacher},
title = {A Single Sign-On Infrastructure for Science Gateways on a Use Case
for Structural Bioinformatics},
journal = {J. Grid Comput.},
volume = {10},
number = {4},
pages = {769--790},
year = {2012},
url = {https://doi.org/10.1007/s10723-012-9247-y},
doi = {10.1007/S10723-012-9247-Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/grid/GesingG0BWSSSHBBKFPKBSBFMJK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/Kohlbacher12,
author = {Oliver Kohlbacher},
title = {CADDSuite - a workflow-enabled suite of open-source tools for drug
discovery},
journal = {J. Cheminformatics},
volume = {4},
number = {{S-1}},
pages = {2},
year = {2012},
url = {https://doi.org/10.1186/1758-2946-4-S1-O2},
doi = {10.1186/1758-2946-4-S1-O2},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/Kohlbacher12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/BirkenheuerBBBVFGGHK0LPMSSWW12,
author = {Georg Birkenheuer and
Dirk Blunk and
Sebastian Breuers and
Andr{\'{e}} Brinkmann and
Ines dos Santos Vieira and
Gregor Fels and
Sandra Gesing and
Richard Grunzke and
Sonja Herres{-}Pawlis and
Oliver Kohlbacher and
Jens Kr{\"{u}}ger and
Ulrich Lang and
Lars Packschies and
Ralph M{\"{u}}ller{-}Pfefferkorn and
Patrick Sch{\"{a}}fer and
Thomas Steinke and
Klaus{-}Dieter Warzecha and
Martin Wewior},
title = {MoSGrid: efficient data management and a standardized data exchange
format for molecular simulations in a grid environment},
journal = {J. Cheminformatics},
volume = {4},
number = {{S-1}},
pages = {21},
year = {2012},
url = {https://doi.org/10.1186/1758-2946-4-S1-P21},
doi = {10.1186/1758-2946-4-S1-P21},
timestamp = {Tue, 04 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/BirkenheuerBBBVFGGHK0LPMSSWW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/FeldhahnSDRSK12,
author = {Magdalena Feldhahn and
Karin Schilbach and
Pierre D{\"{o}}nnes and
Hans{-}Georg Rammensee and
Benjamin Schubert and
Oliver Kohlbacher},
editor = {Sanjay Ranka and
Tamer Kahveci and
Mona Singh},
title = {miHA-match: computational detection of tissue-specific minor histocompatibility
antigens},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 12, Orlando, FL, {USA} - October 08 - 10, 2012},
pages = {625--626},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2382936.2383046},
doi = {10.1145/2382936.2383046},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/FeldhahnSDRSK12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/healthgrid/Herres-PawlisBB12,
author = {Sonja Herres{-}Pawlis and
Georg Birkenheuer and
Andr{\'{e}} Brinkmann and
Sandra Gesing and
Richard Grunzke and
Ren{\'{e}} J{\"{a}}kel and
Oliver Kohlbacher and
Jens Kr{\"{u}}ger and
Ines dos Santos Vieira},
editor = {Sandra Gesing and
Tristan Glatard and
Jens Kr{\"{u}}ger and
S{\'{\i}}lvia Delgado Olabarriaga and
Tony Solomonides and
Jonathan C. Silverstein and
Johan Montagnat and
Alban Gaignard and
Dagmar Krefting},
title = {Workflow-enhanced conformational analysis of guanidine zinc complexes
via a science gateway},
booktitle = {HealthGrid Applications and Technologies Meet Science Gateways for
Life Sciences, Proceedings of HealthGrid 2012, Amsterdam, The Netherlands,
21-23 May 2012},
series = {Studies in Health Technology and Informatics},
volume = {175},
pages = {142--151},
publisher = {{IOS} Press},
year = {2012},
url = {https://doi.org/10.3233/978-1-61499-054-3-142},
doi = {10.3233/978-1-61499-054-3-142},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/healthgrid/Herres-PawlisBB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TungZKKH11,
author = {Chun{-}Wei Tung and
Matthias Ziehm and
Andreas K{\"{a}}mper and
Oliver Kohlbacher and
Shinn{-}Ying Ho},
title = {{POPISK:} T-cell reactivity prediction using support vector machines
and string kernels},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {446},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-446},
doi = {10.1186/1471-2105-12-446},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/TungZKKH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/GesingHKK11,
author = {Sandra Gesing and
Jano I. van Hemert and
P{\'{e}}ter Kacsuk and
Oliver Kohlbacher},
title = {Special Issue: Portals for life sciences - Providing intuitive access
to bioinformatic tools},
journal = {Concurr. Comput. Pract. Exp.},
volume = {23},
number = {3},
pages = {223--234},
year = {2011},
url = {https://doi.org/10.1002/cpe.1687},
doi = {10.1002/CPE.1687},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/concurrency/GesingHKK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/BirkenheuerBBBVFGGHKK0LPMSSSWW11,
author = {Georg Birkenheuer and
Dirk Blunk and
Sebastian Breuers and
Andr{\'{e}} Brinkmann and
Ines dos Santos Vieira and
Gregor Fels and
Sandra Gesing and
Richard Grunzke and
Sonja Herres{-}Pawlis and
Oliver Kohlbacher and
Nico Kruber and
Jens Kr{\"{u}}ger and
Ulrich Lang and
Lars Packschies and
Ralph M{\"{u}}ller{-}Pfefferkorn and
Patrick Sch{\"{a}}fer and
Hans{-}G{\"{u}}nther Schmalz and
Thomas Steinke and
Klaus{-}Dieter Warzecha and
Martin Wewior},
title = {MoSGrid - a molecular simulation grid as a new tool in computational
chemistry, biology and material science},
journal = {J. Cheminformatics},
volume = {3},
number = {{S-1}},
pages = {14},
year = {2011},
url = {https://doi.org/10.1186/1758-2946-3-S1-P14},
doi = {10.1186/1758-2946-3-S1-P14},
timestamp = {Tue, 04 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/BirkenheuerBBBVFGGHKK0LPMSSSWW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/SchumannRFK11,
author = {Marcel Schumann and
Marc R{\"{o}}ttig and
Nina M. Fischer and
Oliver Kohlbacher},
title = {A framework and workflow system for virtual screening and molecular
docking},
journal = {J. Cheminformatics},
volume = {3},
number = {{S-1}},
pages = {15},
year = {2011},
url = {https://doi.org/10.1186/1758-2946-3-S1-P15},
doi = {10.1186/1758-2946-3-S1-P15},
timestamp = {Thu, 14 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/SchumannRFK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/0002BBBBFGGKKLPMHSSSWW11,
author = {Jens Kr{\"{u}}ger and
Georg Birkenheuer and
Dirk Blunk and
Sebastian Breuers and
Andr{\'{e}} Brinkmann and
Gregor Fels and
Sandra Gesing and
Richard Grunzke and
Oliver Kohlbacher and
Nico Kruber and
Ulrich Lang and
Lars Packschies and
Ralph M{\"{u}}ller{-}Pfefferkorn and
Sonja Herres{-}Pawlis and
Patrick Sch{\"{a}}fer and
Hans{-}G{\"{u}}nther Schmalz and
Thomas Steinke and
Klaus{-}Dieter Warzecha and
Martin Wewior},
title = {Molecular simulation grid},
journal = {J. Cheminformatics},
volume = {3},
number = {{S-1}},
pages = {17},
year = {2011},
url = {https://doi.org/10.1186/1758-2946-3-S1-O17},
doi = {10.1186/1758-2946-3-S1-O17},
timestamp = {Tue, 04 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/0002BBBBFGGKKLPMHSSSWW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RottigMBWRK11,
author = {Marc R{\"{o}}ttig and
Marnix H. Medema and
Kai Blin and
Tilmann Weber and
Christian Rausch and
Oliver Kohlbacher},
title = {NRPSpredictor2 - a web server for predicting {NRPS} adenylation domain
specificity},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Web-Server-Issue},
pages = {362--367},
year = {2011},
url = {https://doi.org/10.1093/nar/gkr323},
doi = {10.1093/NAR/GKR323},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RottigMBWRK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ToussaintFZSK11,
author = {Nora C. Toussaint and
Magdalena Feldhahn and
Matthias Ziehm and
Stefan Stevanovic and
Oliver Kohlbacher},
editor = {Robert Grossman and
Andrey Rzhetsky and
Sun Kim and
Wei Wang},
title = {T-cell epitope prediction based on self-tolerance},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
2011},
pages = {584--588},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2147805.2147905},
doi = {10.1145/2147805.2147905},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ToussaintFZSK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwsg/GesingGBBBBBFHKK0PSSSSFWMK11,
author = {Sandra Gesing and
Richard Grunzke and
{\'{A}}kos Balask{\'{o}} and
Georg Birkenheuer and
Dirk Blunk and
Sebastian Breuers and
Andr{\'{e}} Brinkmann and
Gregor Fels and
Sonja Herres{-}Pawlis and
P{\'{e}}ter Kacsuk and
Miklos Kozlovszky and
Jens Kr{\"{u}}ger and
Lars Packschies and
Patrick Sch{\"{a}}fer and
Bernd Schuller and
Johannes Schuster and
Thomas Steinke and
Anna Szikszay Fabri and
Martin Wewior and
Ralph M{\"{u}}ller{-}Pfefferkorn and
Oliver Kohlbacher},
editor = {G{\'{a}}bor Tersty{\'{a}}nszky and
Tam{\'{a}}s Kiss},
title = {Granular Security for a Science Gateway in Structural Bioinformatics},
booktitle = {Proceedings of the 3rd International Workshop on Science Gateways
for Life Sciences, London, United Kingdom, June 8-10, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {819},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-819/paper8.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:48 +0100},
biburl = {https://dblp.org/rec/conf/iwsg/GesingGBBBBBFHKK0PSSSSFWMK11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BriesemeisterRK10,
author = {Sebastian Briesemeister and
J{\"{o}}rg Rahnenf{\"{u}}hrer and
Oliver Kohlbacher},
title = {Going from where to why - interpretable prediction of protein subcellular
localization},
journal = {Bioinform.},
volume = {26},
number = {9},
pages = {1232--1238},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq115},
doi = {10.1093/BIOINFORMATICS/BTQ115},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BriesemeisterRK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HildebrandtDRBSTMSNMLK10,
author = {Andreas Hildebrandt and
Anna Katharina Dehof and
Alexander Rurainski and
Andreas Bertsch and
Marcel Schumann and
Nora C. Toussaint and
Andreas Moll and
Daniel St{\"{o}}ckel and
Stefan Nickels and
Sabine C. Mueller and
Hans{-}Peter Lenhof and
Oliver Kohlbacher},
title = {{BALL} - biochemical algorithms library 1.3},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {531},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-531},
doi = {10.1186/1471-2105-11-531},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/HildebrandtDRBSTMSNMLK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ToussaintWKR10,
author = {Nora C. Toussaint and
Christian Widmer and
Oliver Kohlbacher and
Gunnar R{\"{a}}tsch},
title = {Exploiting physico-chemical properties in string kernels},
journal = {{BMC} Bioinform.},
volume = {11},
number = {{S-8}},
pages = {S7},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-S8-S7},
doi = {10.1186/1471-2105-11-S8-S7},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ToussaintWKR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/FischerSK10,
author = {Nina M. Fischer and
Wolfgang M. Schneider and
Oliver Kohlbacher},
title = {Rescoring of docking poses using force field-based methods},
journal = {J. Cheminformatics},
volume = {2},
number = {{S-1}},
pages = {52},
year = {2010},
url = {https://doi.org/10.1186/1758-2946-2-S1-P52},
doi = {10.1186/1758-2946-2-S1-P52},
timestamp = {Thu, 14 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcheminf/FischerSK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BriesemeisterRK10,
author = {Sebastian Briesemeister and
J{\"{o}}rg Rahnenf{\"{u}}hrer and
Oliver Kohlbacher},
title = {YLoc - an interpretable web server for predicting subcellular localization},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Web-Server-Issue},
pages = {497--502},
year = {2010},
url = {https://doi.org/10.1093/nar/gkq477},
doi = {10.1093/NAR/GKQ477},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BriesemeisterRK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/RottigRK10,
author = {Marc R{\"{o}}ttig and
Christian Rausch and
Oliver Kohlbacher},
title = {Combining Structure and Sequence Information Allows Automated Prediction
of Substrate Specificities within Enzyme Families},
journal = {PLoS Comput. Biol.},
volume = {6},
number = {1},
year = {2010},
url = {https://doi.org/10.1371/journal.pcbi.1000636},
doi = {10.1371/JOURNAL.PCBI.1000636},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/RottigRK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/GesingHKBK10,
author = {Sandra Gesing and
Jano I. van Hemert and
Jos Koetsier and
Andreas Bertsch and
Oliver Kohlbacher},
title = {{TOPP} goes Rapid The OpenMS Proteomics Pipeline in a Grid-Enabled
Web Portal},
booktitle = {10th {IEEE/ACM} International Conference on Cluster, Cloud and Grid
Computing, CCGrid 2010, 17-20 May 2010, Melbourne, Victoria, Australia},
pages = {598--599},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/CCGRID.2010.39},
doi = {10.1109/CCGRID.2010.39},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/GesingHKBK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcci/HennegesRKZ10,
author = {Carsten Henneges and
Marc R{\"{o}}ttig and
Oliver Kohlbacher and
Andreas Zell},
editor = {Joaquim Filipe and
Janusz Kacprzyk},
title = {Graphlet Data Mining of Energetical Interaction Patterns in Protein
3D Structures},
booktitle = {{ICFC-ICNC} 2010 - Proceedings of the International Conference on
Fuzzy Computation and International Conference on Neural Computation,
[parts of the International Joint Conference on Computational Intelligence
{IJCCI} 2010], Valencia, Spain, October 24-26, 2010},
pages = {190--195},
publisher = {SciTePress},
year = {2010},
timestamp = {Thu, 05 May 2011 15:33:43 +0200},
biburl = {https://dblp.org/rec/conf/ijcci/HennegesRKZ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/prib/WidmerTAKR10,
author = {Christian Widmer and
Nora C. Toussaint and
Yasemin Altun and
Oliver Kohlbacher and
Gunnar R{\"{a}}tsch},
editor = {Tjeerd Dijkstra and
Evgeni Tsivtsivadze and
Elena Marchiori and
Tom Heskes},
title = {Novel Machine Learning Methods for {MHC} Class {I} Binding Prediction},
booktitle = {Pattern Recognition in Bioinformatics - 5th {IAPR} International Conference,
{PRIB} 2010, Nijmegen, The Netherlands, September 22-24, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6282},
pages = {98--109},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-16001-1\_9},
doi = {10.1007/978-3-642-16001-1\_9},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/prib/WidmerTAKR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/se/BirkenheuerBBBFGHKKP10,
author = {Georg Birkenheuer and
Sebastian Breuers and
Andr{\'{e}} Brinkmann and
Dirk Blunk and
Gregor Fels and
Sandra Gesing and
Sonja Herres{-}Pawlis and
Oliver Kohlbacher and
Jens Kr{\"{u}}ger and
Lars Packschies},
editor = {Gregor Engels and
Markus Luckey and
Alexander Pretschner and
Ralf H. Reussner},
title = {Grid-Workflows in Molecular Science},
booktitle = {Software Engineering 2010 - Workshopband (inkl. Doktorandensymposium),
Fachtagung des GI-Fachbereichs Softwaretechnik, 22.-26.02.2010, Paderborn},
series = {{LNI}},
volume = {{P-160}},
pages = {177--184},
publisher = {{GI}},
year = {2010},
url = {https://dl.gi.de/handle/20.500.12116/20151},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/se/BirkenheuerBBBFGHKKP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/daglib/p/ReinertK10,
author = {Knut Reinert and
Oliver Kohlbacher},
editor = {Simon J. Hubbard and
Andrew R. Jones},
title = {OpenMS and {TOPP:} Open Source Software for {LC-MS} Data Analysis},
booktitle = {Proteome Bioinformatics},
pages = {201--211},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-1-60761-444-9\_14},
doi = {10.1007/978-1-60761-444-9\_14},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/books/daglib/p/ReinertK10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SchultheissBLKR09,
author = {Sebastian J. Schulthei{\ss} and
Wolfgang Busch and
Jan U. Lohmann and
Oliver Kohlbacher and
Gunnar R{\"{a}}tsch},
title = {{KIRMES:} kernel-based identification of regulatory modules in euchromatic
sequences},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2126--2133},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp278},
doi = {10.1093/BIOINFORMATICS/BTP278},
timestamp = {Sun, 31 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SchultheissBLKR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FeldhahnDTK09,
author = {Magdalena Feldhahn and
Pierre D{\"{o}}nnes and
Philipp Thiel and
Oliver Kohlbacher},
title = {{FRED} - a framework for T-cell epitope detection},
journal = {Bioinform.},
volume = {25},
number = {20},
pages = {2758--2759},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp409},
doi = {10.1093/BIOINFORMATICS/BTP409},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/FeldhahnDTK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KellerBGKKML09,
author = {Andreas Keller and
Christina Backes and
Andreas Gerasch and
Michael Kaufmann and
Oliver Kohlbacher and
Eckart Meese and
Hans{-}Peter Lenhof},
title = {A novel algorithm for detecting differentially regulated paths based
on gene set enrichment analysis},
journal = {Bioinform.},
volume = {25},
number = {21},
pages = {2787--2794},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp510},
doi = {10.1093/BIOINFORMATICS/BTP510},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KellerBGKKML09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SchultheissBLKR09,
author = {Sebastian J. Schulthei{\ss} and
Wolfgang Busch and
Jan U. Lohmann and
Oliver Kohlbacher and
Gunnar R{\"{a}}tsch},
title = {{KIRMES:} kernel-based identification of regulatory modules in euchromatic
sequences},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-13}},
pages = {0},
year = {2009},
url = {http://www.biomedcentral.com/1471-2105/10/S13/O1},
timestamp = {Sun, 31 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SchultheissBLKR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BlumBK09,
author = {Torsten Blum and
Sebastian Briesemeister and
Oliver Kohlbacher},
title = {MultiLoc2: integrating phylogeny and Gene Ontology terms improves
subcellular protein localization prediction},
journal = {{BMC} Bioinform.},
volume = {10},
pages = {274},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-274},
doi = {10.1186/1471-2105-10-274},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BlumBK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/DragerKZSPMOKZ09,
author = {Andreas Dr{\"{a}}ger and
Marcel Kronfeld and
Michael J. Ziller and
Jochen Supper and
Hannes Planatscher and
J{\o}rgen B. Magnus and
Marco Oldiges and
Oliver Kohlbacher and
Andreas Zell},
title = {Modeling metabolic networks in C. glutamicum: a comparison of rate
laws in combination with various parameter optimization strategies},
journal = {{BMC} Syst. Biol.},
volume = {3},
pages = {5},
year = {2009},
url = {https://doi.org/10.1186/1752-0509-3-5},
doi = {10.1186/1752-0509-3-5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/DragerKZSPMOKZ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ToussaintK09,
author = {Nora C. Toussaint and
Oliver Kohlbacher},
title = {OptiTope - a web server for the selection of an optimal set of peptides
for epitope-based vaccines},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Web-Server-Issue},
pages = {617--622},
year = {2009},
url = {https://doi.org/10.1093/nar/gkp293},
doi = {10.1093/NAR/GKP293},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ToussaintK09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/birthday/AlthausKKLR09,
author = {Ernst Althaus and
Gunnar W. Klau and
Oliver Kohlbacher and
Hans{-}Peter Lenhof and
Knut Reinert},
editor = {Susanne Albers and
Helmut Alt and
Stefan N{\"{a}}her},
title = {Integer Linear Programming in Computational Biology},
booktitle = {Efficient Algorithms, Essays Dedicated to Kurt Mehlhorn on the Occasion
of His 60th Birthday},
series = {Lecture Notes in Computer Science},
volume = {5760},
pages = {199--218},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03456-5\_14},
doi = {10.1007/978-3-642-03456-5\_14},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/birthday/AlthausKKLR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gd/AlbrechtKKKMPSW09,
author = {Mario Albrecht and
Andreas Kerren and
Karsten Klein and
Oliver Kohlbacher and
Petra Mutzel and
Wolfgang Paul and
Falk Schreiber and
Michael Wybrow},
editor = {David Eppstein and
Emden R. Gansner},
title = {On Open Problems in Biological Network Visualization},
booktitle = {Graph Drawing, 17th International Symposium, {GD} 2009, Chicago, IL,
USA, September 22-25, 2009. Revised Papers},
series = {Lecture Notes in Computer Science},
volume = {5849},
pages = {256--267},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-11805-0\_25},
doi = {10.1007/978-3-642-11805-0\_25},
timestamp = {Sun, 13 Nov 2022 09:57:30 +0100},
biburl = {https://dblp.org/rec/conf/gd/AlbrechtKKKMPSW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwsg/GesingKH09,
author = {Sandra Gesing and
Oliver Kohlbacher and
Jano I. van Hemert},
editor = {Sandra Gesing and
Jano I. van Hemert},
title = {Portals for Life Sciences - a Brief Introduction},
booktitle = {Proceedings of the International Workshop on Portals for Life Sciences,
{IWPLS} 2009, Edinburgh, UK, September 14-15, 2009},
series = {{CEUR} Workshop Proceedings},
volume = {513},
publisher = {CEUR-WS.org},
year = {2009},
url = {https://ceur-ws.org/Vol-513/paper01.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:48 +0100},
biburl = {https://dblp.org/rec/conf/iwsg/GesingKH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BlumK08,
author = {Torsten Blum and
Oliver Kohlbacher},
title = {MetaRoute: fast search for relevant metabolic routes for interactive
network navigation and visualization},
journal = {Bioinform.},
volume = {24},
number = {18},
pages = {2108--2109},
year = {2008},
url = {https://doi.org/10.1093/bioinformatics/btn360},
doi = {10.1093/BIOINFORMATICS/BTN360},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BlumK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KellerBAGKKKL08,
author = {Andreas Keller and
Christina Backes and
Maher Al{-}Awadhi and
Andreas Gerasch and
Jan K{\"{u}}ntzer and
Oliver Kohlbacher and
Michael Kaufmann and
Hans{-}Peter Lenhof},
title = {GeneTrailExpress: a web-based pipeline for the statistical evaluation
of microarray experiments},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-552},
doi = {10.1186/1471-2105-9-552},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KellerBAGKKKL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/Schulz-TrieglaffPGKR08,
author = {Ole Schulz{-}Trieglaff and
Nico Pfeifer and
Clemens Gr{\"{o}}pl and
Oliver Kohlbacher and
Knut Reinert},
title = {LC-MSsim - a simulation software for liquid chromatography mass spectrometry
data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-423},
doi = {10.1186/1471-2105-9-423},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/Schulz-TrieglaffPGKR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SturmBGHHLPSZRK08,
author = {Marc Sturm and
Andreas Bertsch and
Clemens Gr{\"{o}}pl and
Andreas Hildebrandt and
Rene Hussong and
Eva Lange and
Nico Pfeifer and
Ole Schulz{-}Trieglaff and
Alexandra Zerck and
Knut Reinert and
Oliver Kohlbacher},
title = {OpenMS - An open-source software framework for mass spectrometry},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-163},
doi = {10.1186/1471-2105-9-163},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SturmBGHHLPSZRK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TimmSBKN08,
author = {Wiebke Timm and
Alexandra Scherbart and
Sebastian B{\"{o}}cker and
Oliver Kohlbacher and
Tim W. Nattkemper},
title = {Peak intensity prediction in {MALDI-TOF} mass spectrometry: {A} machine
learning study to support quantitative proteomics},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-443},
doi = {10.1186/1471-2105-9-443},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/TimmSBKN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BlumK08,
author = {Torsten Blum and
Oliver Kohlbacher},
title = {Using Atom Mapping Rules for an Improved Detection of Relevant Routes
in Weighted Metabolic Networks},
journal = {J. Comput. Biol.},
volume = {15},
number = {6},
pages = {565--576},
year = {2008},
url = {https://doi.org/10.1089/cmb.2008.0044},
doi = {10.1089/CMB.2008.0044},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BlumK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/KerzmannFKN08,
author = {Andreas Kerzmann and
Jan Fuhrmann and
Oliver Kohlbacher and
Dirk Neumann},
title = {BALLDock/SLICK: {A} New Method for Protein-Carbohydrate Docking},
journal = {J. Chem. Inf. Model.},
volume = {48},
number = {8},
pages = {1616--1625},
year = {2008},
url = {https://doi.org/10.1021/ci800103u},
doi = {10.1021/CI800103U},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/KerzmannFKN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FeldhahnTSHSRK08,
author = {Magdalena Feldhahn and
Philipp Thiel and
Mathias M. Schuler and
Nina Hillen and
Stefan Stevanovic and
Hans{-}Georg Rammensee and
Oliver Kohlbacher},
title = {EpiToolKit - a web server for computational immunomics},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Web-Server-Issue},
pages = {519--522},
year = {2008},
url = {https://doi.org/10.1093/nar/gkn229},
doi = {10.1093/NAR/GKN229},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FeldhahnTSHSRK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ToussaintDK08,
author = {Nora C. Toussaint and
Pierre D{\"{o}}nnes and
Oliver Kohlbacher},
title = {A Mathematical Framework for the Selection of an Optimal Set of Peptides
for Epitope-Based Vaccines},
journal = {PLoS Comput. Biol.},
volume = {4},
number = {12},
year = {2008},
url = {https://doi.org/10.1371/journal.pcbi.1000246},
doi = {10.1371/JOURNAL.PCBI.1000246},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ToussaintDK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/SchultheissBLKR08,
author = {Sebastian J. Schulthei{\ss} and
Wolfgang Busch and
Jan U. Lohmann and
Oliver Kohlbacher and
Gunnar R{\"{a}}tsch},
editor = {Andreas Beyer and
Michael Schroeder},
title = {{KIRMES:} Kernel-based Identification of Regulatory Modules in Euchromatic
Sequences},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 2008,
September 9-12, 2008, Dresden, Germany},
series = {{LNI}},
volume = {{P-136}},
pages = {158--167},
publisher = {{GI}},
year = {2008},
url = {https://dl.gi.de/handle/20.500.12116/21212},
timestamp = {Sun, 31 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gcb/SchultheissBLKR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/PfeiferK08,
author = {Nico Pfeifer and
Oliver Kohlbacher},
editor = {Keith A. Crandall and
Jens Lagergren},
title = {Multiple Instance Learning Allows {MHC} Class {II} Epitope Predictions
Across Alleles},
booktitle = {Algorithms in Bioinformatics, 8th International Workshop, {WABI} 2008,
Karlsruhe, Germany, September 15-19, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5251},
pages = {210--221},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-87361-7\_18},
doi = {10.1007/978-3-540-87361-7\_18},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/PfeiferK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/dagstuhl/2008P8101,
editor = {Christian G. Huber and
Oliver Kohlbacher and
Michal Linial and
Kathrin Marcus and
Knut Reinert},
title = {Computational Proteomics, 02.03. - 07.03.2008},
series = {Dagstuhl Seminar Proceedings},
volume = {08101},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2008},
url = {http://drops.dagstuhl.de/portals/08101/},
timestamp = {Thu, 10 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/2008P8101.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/dagstuhl/2008P8191,
editor = {Stephen P. Borgatti and
Stephen G. Kobourov and
Oliver Kohlbacher and
Petra Mutzel},
title = {Graph Drawing with Applications to Bioinformatics and Social Sciences,
04.05. - 09.05.2008},
series = {Dagstuhl Seminar Proceedings},
volume = {08191},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik, Germany},
year = {2008},
url = {http://drops.dagstuhl.de/portals/08191/},
timestamp = {Thu, 10 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/2008P8191.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/AlbrechtEGGKKS08,
author = {Mario Albrecht and
Alejandro Estrella{-}Balderrama and
Markus Geyer and
Carsten Gutwenger and
Karsten Klein and
Oliver Kohlbacher and
Michael Schulz},
editor = {Stephen P. Borgatti and
Stephen G. Kobourov and
Oliver Kohlbacher and
Petra Mutzel},
title = {08191 Working Group Summary - Visually Comparing a Set of Graphs},
booktitle = {Graph Drawing with Applications to Bioinformatics and Social Sciences,
04.05. - 09.05.2008},
series = {Dagstuhl Seminar Proceedings},
volume = {08191},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik, Germany},
year = {2008},
url = {http://drops.dagstuhl.de/opus/volltexte/2008/1553/},
timestamp = {Thu, 10 Jun 2021 13:02:11 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/AlbrechtEGGKKS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/BorgattiKKM08,
author = {Stephen P. Borgatti and
Stephen G. Kobourov and
Oliver Kohlbacher and
Petra Mutzel},
editor = {Stephen P. Borgatti and
Stephen G. Kobourov and
Oliver Kohlbacher and
Petra Mutzel},
title = {08191 Abstracts Collection - Graph Drawing with Applications to Bioinformatics
and Social Sciences},
booktitle = {Graph Drawing with Applications to Bioinformatics and Social Sciences,
04.05. - 09.05.2008},
series = {Dagstuhl Seminar Proceedings},
volume = {08191},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik, Germany},
year = {2008},
url = {http://drops.dagstuhl.de/opus/volltexte/2008/1554/},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/BorgattiKKM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/BorgattiKKM08a,
author = {Stephen P. Borgatti and
Stephen G. Kobourov and
Oliver Kohlbacher and
Petra Mutzel},
editor = {Stephen P. Borgatti and
Stephen G. Kobourov and
Oliver Kohlbacher and
Petra Mutzel},
title = {08191 Executive Summary - Graph Drawing with Applications to Bioinformatics
and Social Sciences},
booktitle = {Graph Drawing with Applications to Bioinformatics and Social Sciences,
04.05. - 09.05.2008},
series = {Dagstuhl Seminar Proceedings},
volume = {08191},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik, Germany},
year = {2008},
url = {http://drops.dagstuhl.de/opus/volltexte/2008/1552/},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/BorgattiKKM08a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/ReinertHMLK08,
author = {Knut Reinert and
Christian G. Huber and
Kathrin Marcus and
Michal Linial and
Oliver Kohlbacher},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Michal Linial and
Kathrin Marcus and
Knut Reinert},
title = {08101 Abstracts Collection - Computational Proteomics},
booktitle = {Computational Proteomics, 02.03. - 07.03.2008},
series = {Dagstuhl Seminar Proceedings},
volume = {08101},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2008},
url = {http://drops.dagstuhl.de/opus/volltexte/2008/1784/},
timestamp = {Thu, 10 Jun 2021 13:02:06 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/ReinertHMLK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HildebrandtBRKL07,
author = {Andreas Hildebrandt and
Ralf Blossey and
Sergej Rjasanow and
Oliver Kohlbacher and
Hans{-}Peter Lenhof},
title = {Electrostatic potentials of proteins in water: a structured continuum
approach},
journal = {Bioinform.},
volume = {23},
number = {2},
pages = {99--103},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btl312},
doi = {10.1093/BIOINFORMATICS/BTL312},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HildebrandtBRKL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KohlbacherRGLPSS07,
author = {Oliver Kohlbacher and
Knut Reinert and
Clemens Gr{\"{o}}pl and
Eva Lange and
Nico Pfeifer and
Ole Schulz{-}Trieglaff and
Marc Sturm},
title = {{TOPP} - the OpenMS proteomics pipeline},
journal = {Bioinform.},
volume = {23},
number = {2},
pages = {191--197},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btl299},
doi = {10.1093/BIOINFORMATICS/BTL299},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KohlbacherRGLPSS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ShatkayHBBDK07,
author = {Hagit Shatkay and
Annette H{\"{o}}glund and
Scott Brady and
Torsten Blum and
Pierre D{\"{o}}nnes and
Oliver Kohlbacher},
title = {SherLoc: high-accuracy prediction of protein subcellular localization
by integrating text and protein sequence data},
journal = {Bioinform.},
volume = {23},
number = {11},
pages = {1410--1417},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm115},
doi = {10.1093/BIOINFORMATICS/BTM115},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ShatkayHBBDK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KuntzerBBGKKL07,
author = {Jan K{\"{u}}ntzer and
Christina Backes and
Torsten Blum and
Andreas Gerasch and
Michael Kaufmann and
Oliver Kohlbacher and
Hans{-}Peter Lenhof},
title = {{BNDB} - The Biochemical Network Database},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-367},
doi = {10.1186/1471-2105-8-367},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KuntzerBBGKKL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PfeiferLHK07,
author = {Nico Pfeifer and
Andreas Leinenbach and
Christian G. Huber and
Oliver Kohlbacher},
title = {Statistical learning of peptide retention behavior in chromatographic
separations: a new kernel-based approach for computational proteomics},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-468},
doi = {10.1186/1471-2105-8-468},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PfeiferLHK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/KuntzerKKL07,
author = {Jan K{\"{u}}ntzer and
Benny Kneissl and
Oliver Kohlbacher and
Hans{-}Peter Lenhof},
title = {Abstract analysis of pathways using the {BN++} software framework},
journal = {{BMC} Syst. Biol.},
volume = {1},
number = {{S-1}},
pages = {P24},
year = {2007},
url = {https://doi.org/10.1186/1752-0509-1-S1-P24},
doi = {10.1186/1752-0509-1-S1-P24},
timestamp = {Tue, 05 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/KuntzerKKL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/BlumK07,
author = {Torsten Blum and
Oliver Kohlbacher},
editor = {Claudia Falter and
Alexander Schliep and
Joachim Selbig and
Martin Vingron and
Dirk Walther},
title = {Finding Relevant Biotransformation Routes in Weighted Metabolic Networks},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 2007,
September 26-28, 2007, Potsdam, Germany},
series = {{LNI}},
volume = {{P-115}},
pages = {30--44},
publisher = {{GI}},
year = {2007},
url = {https://dl.gi.de/handle/20.500.12116/22372},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/BlumK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MollHLK06,
author = {Andreas Moll and
Andreas Hildebrandt and
Hans{-}Peter Lenhof and
Oliver Kohlbacher},
title = {BALLView: a tool for research and education in molecular modeling},
journal = {Bioinform.},
volume = {22},
number = {3},
pages = {365--366},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/bti818},
doi = {10.1093/BIOINFORMATICS/BTI818},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MollHLK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoglundDBAK06,
author = {Annette H{\"{o}}glund and
Pierre D{\"{o}}nnes and
Torsten Blum and
Hans{-}Werner Adolph and
Oliver Kohlbacher},
title = {MultiLoc: prediction of protein subcellular localization using N-terminal
targeting sequences, sequence motifs and amino acid composition},
journal = {Bioinform.},
volume = {22},
number = {10},
pages = {1158--1165},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl002},
doi = {10.1093/BIOINFORMATICS/BTL002},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoglundDBAK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/NeumannKML06,
author = {Dirk Neumann and
Oliver Kohlbacher and
Christian Merkwirth and
Thomas Lengauer},
title = {A Fully Computational Model for Predicting Percutaneous Drug Absorption},
journal = {J. Chem. Inf. Model.},
volume = {46},
number = {1},
pages = {424--429},
year = {2006},
url = {https://doi.org/10.1021/ci050332t},
doi = {10.1021/CI050332T},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcisd/NeumannKML06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcisd/KerzmannNK06,
author = {Andreas Kerzmann and
Dirk Neumann and
Oliver Kohlbacher},
title = {{SLICK} - Scoring and Energy Functions for Protein-Carbohydrate Interactions},
journal = {J. Chem. Inf. Model.},
volume = {46},
number = {4},
pages = {1635--1642},
year = {2006},
url = {https://doi.org/10.1021/ci050422y},
doi = {10.1021/CI050422Y},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcisd/KerzmannNK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KuntzerBGBHKKL06,
author = {Jan K{\"{u}}ntzer and
Torsten Blum and
Andreas Gerasch and
Christina Backes and
Andreas Hildebrandt and
Michael Kaufmann and
Oliver Kohlbacher and
Hans{-}Peter Lenhof},
title = {{BN++} - {A} Biological Information System},
journal = {J. Integr. Bioinform.},
volume = {3},
number = {2},
year = {2006},
url = {https://doi.org/10.2390/biecoll-jib-2006-34},
doi = {10.2390/BIECOLL-JIB-2006-34},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jib/KuntzerBGBHKKL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/DonnesK06,
author = {Pierre D{\"{o}}nnes and
Oliver Kohlbacher},
title = {{SVMHC:} a server for prediction of MHC-binding peptides},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Web-Server-Issue},
pages = {194--197},
year = {2006},
url = {https://doi.org/10.1093/nar/gkl284},
doi = {10.1093/NAR/GKL284},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/DonnesK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/HoglundBBDMRKS06,
author = {Annette H{\"{o}}glund and
Torsten Blum and
Scott Brady and
Pierre D{\"{o}}nnes and
John San Miguel and
Matthew Rocheford and
Oliver Kohlbacher and
Hagit Shatkay},
editor = {Russ B. Altman and
Tiffany Murray and
Teri E. Klein and
A. Keith Dunker and
Lawrence Hunter},
title = {Significantly Improved Prediction of Subcellular Localization by Integrating
Text and Protein Sequence Data},
booktitle = {Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii,
USA, 3-7 January 2006},
pages = {16--27},
publisher = {World Scientific},
year = {2006},
url = {http://psb.stanford.edu/psb-online/proceedings/psb06/hoglund.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/HoglundBBDMRKS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/LangeGRKH06,
author = {Eva Lange and
Clemens Gr{\"{o}}pl and
Knut Reinert and
Oliver Kohlbacher and
Andreas Hildebrandt},
editor = {Russ B. Altman and
Tiffany Murray and
Teri E. Klein and
A. Keith Dunker and
Lawrence Hunter},
title = {High-Accuracy Peak Picking of Proteomics Data Using Wavelet Techniques},
booktitle = {Biocomputing 2006, Proceedings of the Pacific Symposium, Maui, Hawaii,
USA, 3-7 January 2006},
pages = {243--254},
publisher = {World Scientific},
year = {2006},
url = {http://psb.stanford.edu/psb-online/proceedings/psb06/lange.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/LangeGRKH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/dagstuhl/2005P5471,
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2006},
url = {http://drops.dagstuhl.de/portals/05471/},
timestamp = {Thu, 10 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/2005P5471.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/gcb/2006,
editor = {Daniel H. Huson and
Oliver Kohlbacher and
Andrei N. Lupas and
Kay Nieselt and
Andreas Zell},
title = {German Conference on Bioinformatics {GCB} 2006, 19.09. 2006 - 22.09.
2006 in T{\"{u}}bingen, Germany},
series = {{LNI}},
volume = {{P-83}},
publisher = {{GI}},
year = {2006},
url = {https://dl.gi.de/handle/20.500.12116/24199},
isbn = {978-3-88579-177-5},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gcb/2006.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/MollHLK05,
author = {Andreas Moll and
Andreas Hildebrandt and
Hans{-}Peter Lenhof and
Oliver Kohlbacher},
title = {BALLView: An object-oriented molecular visualization and modeling
framework},
journal = {J. Comput. Aided Mol. Des.},
volume = {19},
number = {11},
pages = {791--800},
year = {2005},
url = {https://doi.org/10.1007/s10822-005-9027-x},
doi = {10.1007/S10822-005-9027-X},
timestamp = {Thu, 16 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcamd/MollHLK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/complife/GroplLRKSHMK05,
author = {Clemens Gr{\"{o}}pl and
Eva Lange and
Knut Reinert and
Oliver Kohlbacher and
Marc Sturm and
Christian G. Huber and
Bettina M. Mayr and
Christoph L. Klein},
editor = {Michael R. Berthold and
Robert C. Glen and
Kay Diederichs and
Oliver Kohlbacher and
Ingrid Fischer},
title = {Algorithms for the Automated Absolute Quantification of Diagnostic
Markers in Complex Proteomics Samples},
booktitle = {Computational Life Sciences, First International Symposium, CompLife
2005, Konstanz, Germany, September 25-27, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3695},
pages = {151--162},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11560500\_14},
doi = {10.1007/11560500\_14},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/complife/GroplLRKSHMK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/HoglundDBAK05,
author = {Annette H{\"{o}}glund and
Pierre D{\"{o}}nnes and
Torsten Blum and
Hans{-}Werner Adolph and
Oliver Kohlbacher},
editor = {Andrew E. Torda and
Stefan Kurtz and
Matthias Rarey},
title = {Using N-terminal targeting sequences, amino acid composition, and
sequence motifs for predicting protein subcellular localizations},
booktitle = {Proceedings of the German Conference on Bioinformatics {(GCB} 2005),
Hamburg, Germany, October 5-7, 2005},
series = {{LNI}},
volume = {{P-71}},
pages = {45--59},
publisher = {{GI}},
year = {2005},
url = {https://dl.gi.de/handle/20.500.12116/24939},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/HoglundDBAK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icapr/SupperDK05,
author = {Jochen Supper and
Pierre D{\"{o}}nnes and
Oliver Kohlbacher},
editor = {Peng Wang and
Maneesha Singh and
Chidanand Apt{\'{e}} and
Petra Perner},
title = {Analysis of MHC-Peptide Binding Using Amino Acid Property-Based Decision
Rules},
booktitle = {Pattern Recognition and Data Mining, Third International Conference
on Advances in Pattern Recognition, {ICAPR} 2005, Bath, UK, August
22-25, 2005, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {3686},
pages = {446--453},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11551188\_48},
doi = {10.1007/11551188\_48},
timestamp = {Tue, 14 May 2019 10:00:49 +0200},
biburl = {https://dblp.org/rec/conf/icapr/SupperDK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/complife/2005,
editor = {Michael R. Berthold and
Robert C. Glen and
Kay Diederichs and
Oliver Kohlbacher and
Ingrid Fischer},
title = {Computational Life Sciences, First International Symposium, CompLife
2005, Konstanz, Germany, September 25-27, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3695},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11560500},
doi = {10.1007/11560500},
isbn = {3-540-29104-0},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/complife/2005.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/DelmotteMLRKKH05,
author = {Nathana{\"{e}}l Delmotte and
Bettina M. Mayr and
Andreas Leinenbach and
Knut Reinert and
Oliver Kohlbacher and
Christoph L. Klein and
Christian G. Huber},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {Evaluation of {LC-MS} data for the absolute quantitative analysis
of marker proteins},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/539},
timestamp = {Thu, 10 Jun 2021 13:02:10 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/DelmotteMLRKKH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/HuberKR05,
author = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {05471 Executive Summary - Computational Proteomics},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/540},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/HuberKR05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/HuberKR05a,
author = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {05471 Abstract Collection - Computational Proteomics},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/556},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/HuberKR05a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/LangeGKH05,
author = {Eva Lange and
Clemens Gr{\"{o}}pl and
Oliver Kohlbacher and
Andreas Hildebrandt},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {High-accuracy peak picking of proteomics data},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/535},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/LangeGKH05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dagstuhl/SturmQHK05,
author = {Marc Sturm and
Sascha Quinten and
Christian G. Huber and
Oliver Kohlbacher},
editor = {Christian G. Huber and
Oliver Kohlbacher and
Knut Reinert},
title = {A machine learning approach for prediction of {DNA} and peptide retention
times},
booktitle = {Computational Proteomics, 20.-25. November 2005},
series = {Dagstuhl Seminar Proceedings},
volume = {05471},
publisher = {Internationales Begegnungs- und Forschungszentrum f{\"{u}}r Informatik
(IBFI), Schloss Dagstuhl, Germany},
year = {2005},
url = {http://drops.dagstuhl.de/opus/volltexte/2006/548},
timestamp = {Thu, 23 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dagstuhl/SturmQHK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/it/KohlbacherR04,
author = {Oliver Kohlbacher and
Knut Reinert},
title = {Differenzielle Proteomanalyse - Experimentelle Methoden, algorithmische
Herausforderungen (Differential Analysis in Proteomics: Experimental
Methods, Algorithmic Challenges)},
journal = {it Inf. Technol.},
volume = {46},
number = {1},
pages = {31--38},
year = {2004},
url = {http://www.extenza-eps.com/extenza/loadHTML?objectIDValue=26506\&\#38;type=abstract},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/it/KohlbacherR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/FloreaHKSHI03,
author = {Liliana Florea and
Bjarni V. Halld{\'{o}}rsson and
Oliver Kohlbacher and
Russell Schwartz and
Stephen Hoffman and
Sorin Istrail},
title = {Epitope Prediction Algorithms for Peptide based Vaccine Design},
booktitle = {2nd {IEEE} Computer Society Bioinformatics Conference, {CSB} 2003,
Stanford, CA, USA, August 11-14, 2003},
pages = {17--26},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/CSB.2003.1227293},
doi = {10.1109/CSB.2003.1227293},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/FloreaHKSHI03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AlthausKLM02,
author = {Ernst Althaus and
Oliver Kohlbacher and
Hans{-}Peter Lenhof and
Peter M{\"{u}}ller},
title = {A Combinatorial Approach to Protein Docking with Flexible Side Chains},
journal = {J. Comput. Biol.},
volume = {9},
number = {4},
pages = {597--612},
year = {2002},
url = {https://doi.org/10.1089/106652702760277336},
doi = {10.1089/106652702760277336},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/AlthausKLM02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eccb/SiravaSEKKBL02,
author = {Marite Sirava and
T. Sch{\"{a}}fer and
Markus Eiglsperger and
Michael Kaufmann and
Oliver Kohlbacher and
Erich Bornberg{-}Bauer and
Hans{-}Peter Lenhof},
title = {BioMiner - modeling, analyzing, and visualizing biochemical pathways
and networks},
booktitle = {Proceedings of the European Conference on Computational Biology {(ECCB}
2002), October 6-9, 2002, Saarbr{\"{u}}cken, Germany},
pages = {219--230},
year = {2002},
timestamp = {Thu, 23 Jun 2016 15:53:27 +0200},
biburl = {https://dblp.org/rec/conf/eccb/SiravaSEKKBL02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/de/Kohlbacher01,
author = {Oliver Kohlbacher},
title = {New approaches to protein docking},
school = {Saarland University, Germany},
year = {2001},
url = {https://d-nb.info/961007990},
timestamp = {Wed, 22 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/phd/de/Kohlbacher01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pvg/TurnerCEFHHKMRRSWYI01,
author = {Russell J. Turner and
Kabir Chaturvedi and
Nathan Edwards and
Daniel P. Fasulo and
Aaron L. Halpern and
Daniel H. Huson and
Oliver Kohlbacher and
Jason R. Miller and
Knut Reinert and
Karin A. Remington and
Russell Schwartz and
Brian Walenz and
Shibu Yooseph and
Sorin Istrail},
editor = {David E. Breen and
Alan Heirich and
Anton H. J. Koning},
title = {Visualization challenges for a new cyberpharmaceutical computing paradigm},
booktitle = {Proceedings of the {IEEE} 2001 Symposium on Parallel and Large-Data
Visualization and Graphics, {PVG} 2001, San Diego, California, USA,
October 22-23, 2001},
pages = {7--18},
publisher = {{IEEE}},
year = {2001},
url = {https://dl.acm.org/doi/10.5555/502125.502127},
doi = {10.5555/502125.502127},
timestamp = {Thu, 02 Jun 2022 12:38:21 +0200},
biburl = {https://dblp.org/rec/conf/pvg/TurnerCEFHHKMRRSWYI01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/KohlbacherBMHBL01,
author = {Oliver Kohlbacher and
Andreas Burchardt and
Andreas Moll and
Andreas Hildebrandt and
Peter Bayer and
Hans{-}Peter Lenhof},
editor = {Thomas Lengauer},
title = {A NMR-spectra-based scoring function for protein docking},
booktitle = {Proceedings of the Fifth Annual International Conference on Computational
Biology, {RECOMB} 2001, Montr{\'{e}}al, Qu{\'{e}}bec, Canada,
April 22-25, 2001},
pages = {184--192},
publisher = {{ACM}},
year = {2001},
url = {https://doi.org/10.1145/369133.369194},
doi = {10.1145/369133.369194},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/KohlbacherBMHBL01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KohlbacherL00,
author = {Oliver Kohlbacher and
Hans{-}Peter Lenhof},
title = {BALL-rapid software prototyping in computational molecular biology},
journal = {Bioinform.},
volume = {16},
number = {9},
pages = {815--824},
year = {2000},
url = {https://doi.org/10.1093/bioinformatics/16.9.815},
doi = {10.1093/BIOINFORMATICS/16.9.815},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KohlbacherL00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jea/BoghossianKL00,
author = {Nicolas Boghossian and
Oliver Kohlbacher and
Hans{-}Peter Lenhof},
title = {Rapid Software Prototyping in Molecular Modeling Using the Biochemical
Algorithms Library {(BALL)}},
journal = {{ACM} J. Exp. Algorithmics},
volume = {5},
pages = {16},
year = {2000},
url = {https://doi.org/10.1145/351827.384258},
doi = {10.1145/351827.384258},
timestamp = {Thu, 25 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jea/BoghossianKL00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AlthausKLM00,
author = {Ernst Althaus and
Oliver Kohlbacher and
Hans{-}Peter Lenhof and
Peter M{\"{u}}ller},
editor = {Ron Shamir and
Satoru Miyano and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman},
title = {A combinatorial approach to protein docking with flexible side-chains},
booktitle = {Proceedings of the Fourth Annual International Conference on Computational
Molecular Biology, {RECOMB} 2000, Tokyo, Japan, April 8-11, 2000},
pages = {15--24},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/332306.332319},
doi = {10.1145/332306.332319},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/AlthausKLM00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/KohlbacherL99,
author = {Oliver Kohlbacher and
Hans{-}Peter Lenhof},
title = {Rapid Software Prototyping in Computational Molecular Biology},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 1999,
October 4-6, 1999, Hannover, Germany},
pages = {81--92},
year = {1999},
timestamp = {Fri, 02 Aug 2019 15:48:16 +0200},
biburl = {https://dblp.org/rec/conf/gcb/KohlbacherL99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wae/BoghossianKL99,
author = {Nicolas Boghossian and
Oliver Kohlbacher and
Hans{-}Peter Lenhof},
editor = {Jeffrey Scott Vitter and
Christos D. Zaroliagis},
title = {{BALL:} Biochemical Algorithms Library},
booktitle = {Algorithm Engineering, 3rd International Workshop, {WAE} '99, London,
UK, July 19-21, 1999, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1668},
pages = {331--345},
publisher = {Springer},
year = {1999},
url = {https://doi.org/10.1007/3-540-48318-7\_26},
doi = {10.1007/3-540-48318-7\_26},
timestamp = {Fri, 07 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wae/BoghossianKL99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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