BibTeX records: Junhyong Kim

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@inproceedings{DBLP:conf/bibe/HuangK21,
  author       = {Angela Huang and
                  Junhyong Kim},
  title        = {A subspace clustering method for satisfying stoimetric constraints
                  in scRNA -seq},
  booktitle    = {21st {IEEE} International Conference on Bioinformatics and Bioengineering,
                  {BIBE} 2021, Kragujevac, Serbia, October 25-27, 2021},
  pages        = {1--5},
  publisher    = {{IEEE}},
  year         = {2021},
  url          = {https://doi.org/10.1109/BIBE52308.2021.9635324},
  doi          = {10.1109/BIBE52308.2021.9635324},
  timestamp    = {Fri, 17 Dec 2021 08:28:48 +0100},
  biburl       = {https://dblp.org/rec/conf/bibe/HuangK21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/KuangK20,
  author       = {Da Kuang and
                  Junhyong Kim},
  title        = {Resistant Fit Regression Normalization for Single-cell RNA-seq Data},
  booktitle    = {20th {IEEE} International Conference on Bioinformatics and Bioengineering,
                  {BIBE} 2020, Cincinnati, OH, USA, October 26-28, 2020},
  pages        = {236--240},
  publisher    = {{IEEE}},
  year         = {2020},
  url          = {https://doi.org/10.1109/BIBE50027.2020.00046},
  doi          = {10.1109/BIBE50027.2020.00046},
  timestamp    = {Fri, 08 Jan 2021 16:29:47 +0100},
  biburl       = {https://dblp.org/rec/conf/bibe/KuangK20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhuFDMKK18,
  author       = {Qin Zhu and
                  Stephen A. Fisher and
                  Hannah Dueck and
                  Sarah Middleton and
                  Mugdha Khaladkar and
                  Junhyong Kim},
  title        = {{PIVOT:} platform for interactive analysis and visualization of transcriptomics
                  data},
  journal      = {{BMC} Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {6:1--6:8},
  year         = {2018},
  url          = {https://doi.org/10.1186/s12859-017-1994-0},
  doi          = {10.1186/S12859-017-1994-0},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/ZhuFDMKK18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipaw/AlawiniCDFK18,
  author       = {Abdussalam Alawini and
                  Leshang Chen and
                  Susan B. Davidson and
                  Stephen Fisher and
                  Junhyong Kim},
  editor       = {Khalid Belhajjame and
                  Ashish Gehani and
                  Pinar Alper},
  title        = {Discovering Similar Workflows via Provenance Clustering: {A} Case
                  Study},
  booktitle    = {Provenance and Annotation of Data and Processes - 7th International
                  Provenance and Annotation Workshop, {IPAW} 2018, London, UK, July
                  9-10, 2018, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {11017},
  pages        = {115--127},
  publisher    = {Springer},
  year         = {2018},
  url          = {https://doi.org/10.1007/978-3-319-98379-0\_9},
  doi          = {10.1007/978-3-319-98379-0\_9},
  timestamp    = {Tue, 14 May 2019 10:00:47 +0200},
  biburl       = {https://dblp.org/rec/conf/ipaw/AlawiniCDFK18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/MirarabNGWKW15,
  author       = {Siavash Mirarab and
                  Nam Nguyen and
                  Sheng Guo and
                  Li{-}San Wang and
                  Junhyong Kim and
                  Tandy J. Warnow},
  title        = {{PASTA:} Ultra-Large Multiple Sequence Alignment for Nucleotide and
                  Amino-Acid Sequences},
  journal      = {J. Comput. Biol.},
  volume       = {22},
  number       = {5},
  pages        = {377--386},
  year         = {2015},
  url          = {https://doi.org/10.1089/cmb.2014.0156},
  doi          = {10.1089/CMB.2014.0156},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/MirarabNGWKW15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LeeK08,
  author       = {Miler T. Lee and
                  Junhyong Kim},
  title        = {Self Containment, a Property of Modular {RNA} Structures, Distinguishes
                  microRNAs},
  journal      = {PLoS Comput. Biol.},
  volume       = {4},
  number       = {8},
  year         = {2008},
  url          = {https://doi.org/10.1371/journal.pcbi.1000150},
  doi          = {10.1371/JOURNAL.PCBI.1000150},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/LeeK08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AngelovHKKK07,
  author       = {Stanislav Angelov and
                  Boulos Harb and
                  Sampath Kannan and
                  Sanjeev Khanna and
                  Junhyong Kim},
  title        = {Efficient Enumeration of Phylogenetically Informative Substrings},
  journal      = {J. Comput. Biol.},
  volume       = {14},
  number       = {6},
  pages        = {701--723},
  year         = {2007},
  url          = {https://doi.org/10.1089/cmb.2007.R011},
  doi          = {10.1089/CMB.2007.R011},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jcb/AngelovHKKK07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/Kim07,
  author       = {Junhyong Kim},
  editor       = {Sarah Cohen Boulakia and
                  Val Tannen},
  title        = {Phyl-O'Data {(POD)} from Tree of Life: Integration Challenges from
                  Yellow Slimy Things to Black Crunchy Stuff},
  booktitle    = {Data Integration in the Life Sciences, 4th International Workshop,
                  {DILS} 2007, Philadelphia, PA, USA, June 27-29, 2007, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4544},
  pages        = {3--5},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-73255-6\_2},
  doi          = {10.1007/978-3-540-73255-6\_2},
  timestamp    = {Mon, 16 Sep 2019 15:28:31 +0200},
  biburl       = {https://dblp.org/rec/conf/dils/Kim07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/WangWKSK06,
  author       = {Li{-}San Wang and
                  Doris Wagner and
                  Chang Seob Kwon and
                  Yanhui Su and
                  Junhyong Kim},
  title        = {Transcriptional Target Prediction Using Qualitative Reasoning},
  booktitle    = {28th International Conference of the {IEEE} Engineering in Medicine
                  and Biology Society, {EMBC} 2006, New York City, NY, USA, August 30
                  - September 3, 2006, Main Volume},
  pages        = {3138--3141},
  publisher    = {{IEEE}},
  year         = {2006},
  url          = {https://doi.org/10.1109/IEMBS.2006.259290},
  doi          = {10.1109/IEMBS.2006.259290},
  timestamp    = {Tue, 01 Jun 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/embc/WangWKSK06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/AngelovHKKK06,
  author       = {Stanislav Angelov and
                  Boulos Harb and
                  Sampath Kannan and
                  Sanjeev Khanna and
                  Junhyong Kim},
  editor       = {Alberto Apostolico and
                  Concettina Guerra and
                  Sorin Istrail and
                  Pavel A. Pevzner and
                  Michael S. Waterman},
  title        = {Efficient Enumeration of Phylogenetically Informative Substrings},
  booktitle    = {Research in Computational Molecular Biology, 10th Annual International
                  Conference, {RECOMB} 2006, Venice, Italy, April 2-5, 2006, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3909},
  pages        = {248--264},
  publisher    = {Springer},
  year         = {2006},
  url          = {https://doi.org/10.1007/11732990\_22},
  doi          = {10.1007/11732990\_22},
  timestamp    = {Mon, 13 May 2019 09:30:09 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/AngelovHKKK06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vldb/ZhengFCGKD06,
  author       = {Yifeng Zheng and
                  Stephen Fisher and
                  Shirley Cohen and
                  Sheng Guo and
                  Junhyong Kim and
                  Susan B. Davidson},
  editor       = {Umeshwar Dayal and
                  Kyu{-}Young Whang and
                  David B. Lomet and
                  Gustavo Alonso and
                  Guy M. Lohman and
                  Martin L. Kersten and
                  Sang Kyun Cha and
                  Young{-}Kuk Kim},
  title        = {Crimson: {A} Data Management System to Support Evaluating Phylogenetic
                  Tree Reconstruction Algorithms},
  booktitle    = {Proceedings of the 32nd International Conference on Very Large Data
                  Bases, Seoul, Korea, September 12-15, 2006},
  pages        = {1231--1234},
  publisher    = {{ACM}},
  year         = {2006},
  url          = {http://dl.acm.org/citation.cfm?id=1164251},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/vldb/ZhengFCGKD06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KimJ05,
  author       = {Junhyong Kim and
                  Inge Jonassen},
  title        = {Guest Editorial: {WABI} Special Section Part {II}},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {2},
  number       = {1},
  pages        = {1--2},
  year         = {2005},
  url          = {https://doi.org/10.1109/TCBB.2005.11},
  doi          = {10.1109/TCBB.2005.11},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/KimJ05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ssdbm/DavidsonKZ05,
  author       = {Susan B. Davidson and
                  Junhyong Kim and
                  Yifeng Zheng},
  editor       = {James Frew},
  title        = {Efficiently Supporting Structure Queries on Phylogenetic Trees},
  booktitle    = {17th International Conference on Scientific and Statistical Database
                  Management, {SSDBM} 2005, 27-29 June 2005, University of California,
                  Santa Barbara, CA, USA, Proceedings},
  pages        = {93--102},
  year         = {2005},
  timestamp    = {Tue, 18 Sep 2012 21:15:21 +0200},
  biburl       = {https://dblp.org/rec/conf/ssdbm/DavidsonKZ05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/KimJ04,
  author       = {Junhyong Kim and
                  Inge Jonassen},
  title        = {Guest Editorial: {WABI} Special Section Part 1},
  journal      = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
  volume       = {1},
  number       = {4},
  pages        = {137--138},
  year         = {2004},
  url          = {https://doi.org/10.1109/TCBB.2004.42},
  doi          = {10.1109/TCBB.2004.42},
  timestamp    = {Mon, 03 Apr 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/tcbb/KimJ04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/AngelovHKKKW04,
  author       = {Stanislav Angelov and
                  Boulos Harb and
                  Sampath Kannan and
                  Sanjeev Khanna and
                  Junhyong Kim and
                  Li{-}San Wang},
  editor       = {Inge Jonassen and
                  Junhyong Kim},
  title        = {Genome Identification and Classification by Short Oligo Arrays},
  booktitle    = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
                  Bergen, Norway, September 17-21, 2004, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3240},
  pages        = {400--411},
  publisher    = {Springer},
  year         = {2004},
  url          = {https://doi.org/10.1007/978-3-540-30219-3\_34},
  doi          = {10.1007/978-3-540-30219-3\_34},
  timestamp    = {Tue, 14 May 2019 10:00:40 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/AngelovHKKKW04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/wabi/2004,
  editor       = {Inge Jonassen and
                  Junhyong Kim},
  title        = {Algorithms in Bioinformatics, 4th International Workshop, {WABI} 2004,
                  Bergen, Norway, September 17-21, 2004, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3240},
  publisher    = {Springer},
  year         = {2004},
  url          = {https://doi.org/10.1007/b100405},
  doi          = {10.1007/B100405},
  isbn         = {3-540-23018-1},
  timestamp    = {Tue, 14 May 2019 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/wabi/2004.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MagweneLK03,
  author       = {Paul M. Magwene and
                  Paul Lizardi and
                  Junhyong Kim},
  title        = {Reconstructing the Temporal Ordering of Biological Samples Using Microarray
                  Data},
  journal      = {Bioinform.},
  volume       = {19},
  number       = {7},
  pages        = {842--850},
  year         = {2003},
  url          = {https://doi.org/10.1093/bioinformatics/btg081},
  doi          = {10.1093/BIOINFORMATICS/BTG081},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MagweneLK03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RifkinK02,
  author       = {S. A. Rifkin and
                  Junhyong Kim},
  title        = {Geometry of gene expression dynamics},
  journal      = {Bioinform.},
  volume       = {18},
  number       = {9},
  pages        = {1176--1183},
  year         = {2002},
  url          = {https://doi.org/10.1093/bioinformatics/18.9.1176},
  doi          = {10.1093/BIOINFORMATICS/18.9.1176},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/RifkinK02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/computer/Kim02,
  author       = {Junhyong Kim},
  title        = {Computers Are from Mars, Organisms Are from Venus},
  journal      = {Computer},
  volume       = {35},
  number       = {7},
  pages        = {25--32},
  year         = {2002},
  url          = {https://doi.org/10.1109/MC.2002.1016898},
  doi          = {10.1109/MC.2002.1016898},
  timestamp    = {Wed, 12 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/computer/Kim02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/AspnesHKKS02,
  author       = {James Aspnes and
                  Julia Hartling and
                  Ming{-}Yang Kao and
                  Junhyong Kim and
                  Gauri Shah},
  title        = {A Combinatorial Toolbox for Protein Sequence Design and Landscape
                  Analysis in the Grand Canonical Model},
  journal      = {J. Comput. Biol.},
  volume       = {9},
  number       = {5},
  pages        = {721--741},
  year         = {2002},
  url          = {https://doi.org/10.1089/106652702761034154},
  doi          = {10.1089/106652702761034154},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcb/AspnesHKKS02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isaac/AspnesHKKS01,
  author       = {James Aspnes and
                  Julia Hartling and
                  Ming{-}Yang Kao and
                  Junhyong Kim and
                  Gauri Shah},
  editor       = {Peter Eades and
                  Tadao Takaoka},
  title        = {A Combinatorial Toolbox for Protein Sequence Design and Landscape
                  Analysis in the Grand Canonical Model},
  booktitle    = {Algorithms and Computation, 12th International Symposium, {ISAAC}
                  2001, Christchurch, New Zealand, December 19-21, 2001, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2223},
  pages        = {403--415},
  publisher    = {Springer},
  year         = {2001},
  url          = {https://doi.org/10.1007/3-540-45678-3\_35},
  doi          = {10.1007/3-540-45678-3\_35},
  timestamp    = {Tue, 14 May 2019 10:00:50 +0200},
  biburl       = {https://dblp.org/rec/conf/isaac/AspnesHKKS01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/KimS01,
  author       = {Junhyong Kim and
                  Benjamin A. Salisbury},
  editor       = {Russ B. Altman and
                  A. Keith Dunker and
                  Lawrence Hunter and
                  Teri E. Klein},
  title        = {A Tree Obscured By Vines: Horizontal Gene Transfer and the Median
                  Tree Method of Estimating Species Phylogeny},
  booktitle    = {Proceedings of the 6th Pacific Symposium on Biocomputing, {PSB} 2001,
                  Hawaii, USA, January 3-7, 2001},
  pages        = {571--582},
  year         = {2001},
  url          = {http://psb.stanford.edu/psb-online/proceedings/psb01/jkim.pdf},
  timestamp    = {Thu, 12 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/KimS01.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/cs-CE-0101015,
  author       = {James Aspnes and
                  Julia Hartling and
                  Ming{-}Yang Kao and
                  Junhyong Kim and
                  Gauri Shah},
  title        = {Combinatorial Toolbox for Protein Sequence Design and Landscape Analysis
                  in the Grand Canonical Model},
  journal      = {CoRR},
  volume       = {cs.CE/0101015},
  year         = {2001},
  url          = {https://arxiv.org/abs/cs/0101015},
  timestamp    = {Fri, 10 Jan 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/corr/cs-CE-0101015.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KimMWCC00,
  author       = {Junhyong Kim and
                  Etsuko N. Moriyama and
                  Coral G. Warr and
                  Peter J. Clyne and
                  John R. Carlson},
  title        = {Identification of novel multi-transmembrane proteins from genomic
                  databases using quasi-periodic structural properties},
  journal      = {Bioinform.},
  volume       = {16},
  number       = {9},
  pages        = {767--775},
  year         = {2000},
  url          = {https://doi.org/10.1093/bioinformatics/16.9.767},
  doi          = {10.1093/BIOINFORMATICS/16.9.767},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KimMWCC00.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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