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ORCIDBibTeX records: Igor Jurisica
@article{DBLP:journals/bioinformatics/WongPKFJ23,
author = {Serene W. H. Wong and
Chiara Pastrello and
Max Kotlyar and
Christos Faloutsos and
Igor Jurisica},
title = {\emph{USNAP}: fast unique dense region detection and its application
to lung cancer},
journal = {Bioinform.},
volume = {39},
number = {8},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btad477},
doi = {10.1093/BIOINFORMATICS/BTAD477},
timestamp = {Mon, 01 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/WongPKFJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HauschildPEBAAKLJ23,
author = {Anne{-}Christin Hauschild and
Chiara Pastrello and
Gitta Kirana Anindya Ekaputeri and
Dylan Bethune{-}Waddell and
Mark Abovsky and
Zuhaib Ahmed and
Max Kotlyar and
Richard Lu and
Igor Jurisica},
title = {MirDIP 5.2: tissue context annotation and novel microRNA curation},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{D1}},
pages = {217--225},
year = {2023},
url = {https://doi.org/10.1093/nar/gkac1070},
doi = {10.1093/NAR/GKAC1070},
timestamp = {Fri, 18 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HauschildPEBAAKLJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AgapitoPNJ22,
author = {Giuseppe Agapito and
Chiara Pastrello and
Yun Niu and
Igor Jurisica},
title = {Pathway integration and annotation: building a puzzle with non-matching
pieces and no reference picture},
journal = {Briefings Bioinform.},
volume = {23},
number = {5},
year = {2022},
url = {https://doi.org/10.1093/bib/bbac368},
doi = {10.1093/BIB/BBAC368},
timestamp = {Tue, 06 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/AgapitoPNJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TokarPARJ22,
author = {Tom{\'{a}}s Tok{\'{a}}r and
Chiara Pastrello and
Mark Abovsky and
Sara Rahmati and
Igor Jurisica},
title = {miRAnno - network-based functional microRNA annotation},
journal = {Bioinform.},
volume = {38},
number = {2},
pages = {592--593},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btab527},
doi = {10.1093/BIOINFORMATICS/BTAB527},
timestamp = {Fri, 21 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TokarPARJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/inffus/HolzingerDECASS22,
author = {Andreas Holzinger and
Matthias Dehmer and
Frank Emmert{-}Streib and
Rita Cucchiara and
Isabelle Augenstein and
Javier Del Ser and
Wojciech Samek and
Igor Jurisica and
Natalia D{\'{\i}}az Rodr{\'{\i}}guez},
title = {Information fusion as an integrative cross-cutting enabler to achieve
robust, explainable, and trustworthy medical artificial intelligence},
journal = {Inf. Fusion},
volume = {79},
pages = {263--278},
year = {2022},
url = {https://doi.org/10.1016/j.inffus.2021.10.007},
doi = {10.1016/J.INFFUS.2021.10.007},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/inffus/HolzingerDECASS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KotlyarPACVJ22,
author = {Max Kotlyar and
Chiara Pastrello and
Zuhaib Ahmed and
Justin Chee and
Zofia Varyova and
Igor Jurisica},
title = {{IID} 2021: towards context-specific protein interaction analyses
by increased coverage, enhanced annotation and enrichment analysis},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {640--647},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1034},
doi = {10.1093/NAR/GKAB1034},
timestamp = {Sun, 15 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KotlyarPACVJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/AgapitoPJ21,
author = {Giuseppe Agapito and
Chiara Pastrello and
Igor Jurisica},
title = {Comprehensive pathway enrichment analysis workflows: {COVID-19} case
study},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {676--689},
year = {2021},
url = {https://doi.org/10.1093/bib/bbaa377},
doi = {10.1093/BIB/BBAA377},
timestamp = {Wed, 14 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/AgapitoPJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/PerfettoPdDIKLM20,
author = {Livia Perfetto and
Chiara Pastrello and
Noemi del{-}Toro and
Margaret J. Duesbury and
Marta Iannuccelli and
Max Kotlyar and
Luana Licata and
Birgit Meldal and
Kalpana Panneerselvam and
Simona Panni and
N. Rahimzadeh and
Sylvie Ricard{-}Blum and
Lukasz Salw{\'{\i}}nski and
Anjali Shrivastava and
Gianni Cesareni and
Matteo Pellegrini and
Sandra E. Orchard and
Igor Jurisica and
Henning Hermjakob and
Pablo Porras},
title = {The IMEx coronavirus interactome: an evolving map of Coronaviridae-host
molecular interactions},
journal = {Database J. Biol. Databases Curation},
volume = {2020},
year = {2020},
url = {https://doi.org/10.1093/database/baaa096},
doi = {10.1093/DATABASE/BAAA096},
timestamp = {Sun, 04 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/PerfettoPdDIKLM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TokarPJ20,
author = {Tom{\'{a}}s Tok{\'{a}}r and
Chiara Pastrello and
Igor Jurisica},
title = {{GSOAP:} a tool for visualization of gene set over-representation
analysis},
journal = {Bioinform.},
volume = {36},
number = {9},
pages = {2923--2925},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa001},
doi = {10.1093/BIOINFORMATICS/BTAA001},
timestamp = {Fri, 14 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TokarPJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AgapitoPGJC20,
author = {Giuseppe Agapito and
Chiara Pastrello and
Pietro Hiram Guzzi and
Igor Jurisica and
Mario Cannataro},
title = {BioPAX-Parser: parsing and enrichment analysis of BioPAX pathways},
journal = {Bioinform.},
volume = {36},
number = {15},
pages = {4377--4378},
year = {2020},
url = {https://doi.org/10.1093/bioinformatics/btaa529},
doi = {10.1093/BIOINFORMATICS/BTAA529},
timestamp = {Tue, 20 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AgapitoPGJC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RahmatiAPKLCRCJ20,
author = {Sara Rahmati and
Mark Abovsky and
Chiara Pastrello and
Max Kotlyar and
Richard Lu and
Christian A. Cumbaa and
Proton Rahman and
Vinod Chandran and
Igor Jurisica},
title = {pathDIP 4: an extended pathway annotations and enrichment analysis
resource for human, model organisms and domesticated species},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D479--D488},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz989},
doi = {10.1093/NAR/GKZ989},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RahmatiAPKLCRCJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/mimb/PastrelloKJ20,
author = {Chiara Pastrello and
Max Kotlyar and
Igor Jurisica},
editor = {Stefan Canzar and
Francisca Rojas Ringeling},
title = {Informed Use of Protein-Protein Interaction Data: {A} Focus on the
Integrated Interactions Database {(IID)}},
booktitle = {Protein-Protein Interaction Networks, Methods and Protocols},
series = {Methods in Molecular Biology},
volume = {2074},
pages = {125--134},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-1-4939-9873-9\_10},
doi = {10.1007/978-1-4939-9873-9\_10},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/mimb/PastrelloKJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KotlyarPMJ19,
author = {Max Kotlyar and
Chiara Pastrello and
Zara Malik and
Igor Jurisica},
title = {{IID} 2018 update: context-specific physical protein-protein interactions
in human, model organisms and domesticated species},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D581--D589},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1037},
doi = {10.1093/NAR/GKY1037},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KotlyarPMJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/KotlyarPRJ19,
author = {Max Kotlyar and
Chiara Pastrello and
Andrea E. M. Rossos and
Igor Jurisica},
editor = {Shoba Ranganathan and
Michael Gribskov and
Kenta Nakai and
Christian Sch{\"{o}}nbach},
title = {Protein-Protein Interaction Databases},
booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume
1},
pages = {988--996},
publisher = {Elsevier},
year = {2019},
url = {https://doi.org/10.1016/b978-0-12-809633-8.20495-0},
doi = {10.1016/B978-0-12-809633-8.20495-0},
timestamp = {Thu, 05 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/bioinf/KotlyarPRJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/HauschildPRJ19,
author = {Anne{-}Christin Hauschild and
Chiara Pastrello and
Andrea E. M. Rossos and
Igor Jurisica},
editor = {Shoba Ranganathan and
Michael Gribskov and
Kenta Nakai and
Christian Sch{\"{o}}nbach},
title = {Visualization of Biomedical Networks},
booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume
1},
pages = {1016--1035},
publisher = {Elsevier},
year = {2019},
url = {https://doi.org/10.1016/b978-0-12-809633-8.20430-5},
doi = {10.1016/B978-0-12-809633-8.20430-5},
timestamp = {Thu, 05 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/bioinf/HauschildPRJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/RahmatiPRJ19,
author = {Sara Rahmati and
Chiara Pastrello and
Andrea E. M. Rossos and
Igor Jurisica},
editor = {Shoba Ranganathan and
Michael Gribskov and
Kenta Nakai and
Christian Sch{\"{o}}nbach},
title = {Two Decades of Biological Pathway Databases: Results and Challenges},
booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume
1},
pages = {1071--1084},
publisher = {Elsevier},
year = {2019},
url = {https://doi.org/10.1016/b978-0-12-809633-8.20496-2},
doi = {10.1016/B978-0-12-809633-8.20496-2},
timestamp = {Thu, 05 Nov 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/bioinf/RahmatiPRJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DumousseauAABCC18,
author = {M. Sivade Dumousseau and
Diego Alonso{-}L{\'{o}}pez and
Mais G. Ammari and
Glyn Bradley and
Nancy H. Campbell and
Arnaud C{\'{e}}ol and
Gianni Cesareni and
Colin W. Combe and
Javier De Las Rivas and
Noemi del{-}Toro and
Joshua Heimbach and
Henning Hermjakob and
Igor Jurisica and
Maximilian Koch and
Luana Licata and
Ruth C. Lovering and
David J. Lynn and
Birgit H. M. Meldal and
Gos Micklem and
Simona Panni and
Pablo Porras and
Sylvie Ricard{-}Blum and
Bernd Roechert and
Lukasz Salw{\'{\i}}nski and
Anjali Shrivastava and
Julie M. Sullivan and
Nicolas Thierry{-}Mieg and
Yo Yehudi and
Kim Van Roey and
Sandra E. Orchard},
title = {Encompassing new use cases - level 3.0 of the {HUPO-PSI} format for
molecular interactions},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {134:1--134:8},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2118-1},
doi = {10.1186/S12859-018-2118-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/DumousseauAABCC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/TokarPRAHTLJ18,
author = {Tom{\'{a}}s Tok{\'{a}}r and
Chiara Pastrello and
Andrea E. M. Rossos and
Mark Abovsky and
Anne{-}Christin Hauschild and
Mike Tsay and
Richard Lu and
Igor Jurisica},
title = {mirDIP 4.1 - integrative database of human microRNA target predictions},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D360--D370},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx1144},
doi = {10.1093/NAR/GKX1144},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/TokarPRAHTLJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cascon/TokarJVV08,
author = {Tom{\'{a}}s Tok{\'{a}}r and
Igor Jurisica and
Naomi P. Visanji and
Christian Veillette},
editor = {Iosif{-}Viorel Onut and
Andrew Jaramillo and
Guy{-}Vincent Jourdan and
Dorina C. Petriu and
Wang Chen},
title = {Data-driven medicine: promise and challenges},
booktitle = {Proceedings of the 28th Annual International Conference on Computer
Science and Software Engineering, {CASCON} 2018, Markham, Ontario,
Canada, October 29-31, 2018},
pages = {384--386},
publisher = {{ACM}},
year = {2018},
url = {https://dl.acm.org/citation.cfm?id=3291352},
timestamp = {Tue, 19 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cascon/TokarJVV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/WongPKFJ18,
author = {Serene W. H. Wong and
Chiara Pastrello and
Max Kotlyar and
Christos Faloutsos and
Igor Jurisica},
editor = {Yike Guo and
Faisal Farooq},
title = {{SDREGION:} Fast Spotting of Changing Communities in Biological Networks},
booktitle = {Proceedings of the 24th {ACM} {SIGKDD} International Conference on
Knowledge Discovery {\&} Data Mining, {KDD} 2018, London, UK,
August 19-23, 2018},
pages = {867--875},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3219819.3219854},
doi = {10.1145/3219819.3219854},
timestamp = {Wed, 21 Nov 2018 12:44:27 +0100},
biburl = {https://dblp.org/rec/conf/kdd/WongPKFJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RahmatiAPJ17,
author = {Sara Rahmati and
Mark Abovsky and
Chiara Pastrello and
Igor Jurisica},
title = {pathDIP: an annotated resource for known and predicted human gene-pathway
associations and pathway enrichment analysis},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D419--D426},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1082},
doi = {10.1093/NAR/GKW1082},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RahmatiAPJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cascon/WongJ07,
author = {Serene Wong and
Igor Jurisica},
editor = {Marcellus Mindel and
Kelly A. Lyons and
Joe Wigglesworth},
title = {Big data analytics: challenges and applications to health care},
booktitle = {Proceedings of the 27th Annual International Conference on Computer
Science and Software Engineering, {CASCON} 2017, Markham, Ontario,
Canada, November 6-8, 2017},
pages = {338},
publisher = {{IBM} / {ACM}},
year = {2017},
url = {http://dl.acm.org/citation.cfm?id=3172852},
timestamp = {Thu, 27 Aug 2020 18:26:39 +0200},
biburl = {https://dblp.org/rec/conf/cascon/WongJ07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VargasAPMLJJ16,
author = {Andrea Vargas and
Marc Angeli and
Chiara Pastrello and
Rosanne McQuaid and
Han Li and
Andrea Jurisicova and
Igor Jurisica},
title = {Robust quantitative scratch assay},
journal = {Bioinform.},
volume = {32},
number = {9},
pages = {1439--1440},
year = {2016},
url = {https://doi.org/10.1093/bioinformatics/btv746},
doi = {10.1093/BIOINFORMATICS/BTV746},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/VargasAPMLJJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KotlyarPSJ16,
author = {Max Kotlyar and
Chiara Pastrello and
Nicholas Sheahan and
Igor Jurisica},
title = {Integrated interactions database: tissue-specific view of the human
and model organism interactomes},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {536--541},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1115},
doi = {10.1093/NAR/GKV1115},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KotlyarPSJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gecco/LarsenADJAB16,
author = {Simon J. Larsen and
Frederik G. Alk{\ae}rsig and
Henrik J. Ditzel and
Igor Jurisica and
Nicolas Alcaraz and
Jan Baumbach},
editor = {Tobias Friedrich and
Frank Neumann and
Andrew M. Sutton},
title = {A Simulated Annealing Algorithm for Maximum Common Edge Subgraph Detection
in Biological Networks},
booktitle = {Proceedings of the 2016 on Genetic and Evolutionary Computation Conference,
Denver, CO, USA, July 20 - 24, 2016},
pages = {341--348},
publisher = {{ACM}},
year = {2016},
url = {https://doi.org/10.1145/2908812.2908858},
doi = {10.1145/2908812.2908858},
timestamp = {Tue, 06 Nov 2018 11:06:42 +0100},
biburl = {https://dblp.org/rec/conf/gecco/LarsenADJAB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/lncs/JeanquartierJKTHJH16,
author = {Fleur Jeanquartier and
Claire Jean{-}Quartier and
Max Kotlyar and
Tom{\'{a}}s Tok{\'{a}}r and
Anne{-}Christin Hauschild and
Igor Jurisica and
Andreas Holzinger},
editor = {Andreas Holzinger},
title = {Machine Learning for In Silico Modeling of Tumor Growth},
booktitle = {Machine Learning for Health Informatics - State-of-the-Art and Future
Challenges},
series = {Lecture Notes in Computer Science},
volume = {9605},
pages = {415--434},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-50478-0\_21},
doi = {10.1007/978-3-319-50478-0\_21},
timestamp = {Tue, 14 May 2019 10:00:55 +0200},
biburl = {https://dblp.org/rec/series/lncs/JeanquartierJKTHJH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoengPMJ15,
author = {Julia Hoeng and
Manuel C. Peitsch and
Pablo Meyer and
Igor Jurisica},
title = {Where are we at regarding species translation? {A} review of the sbv
{IMPROVER} challenge},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {451--452},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv065},
doi = {10.1093/BIOINFORMATICS/BTV065},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoengPMJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/FortneyGKPATJ15,
author = {Kristen Fortney and
Joshua Griesman and
Max Kotlyar and
Chiara Pastrello and
Marc Angeli and
Ming{-}Sound Tsao and
Igor Jurisica},
title = {Prioritizing Therapeutics for Lung Cancer: An Integrative Meta-analysis
of Cancer Gene Signatures and Chemogenomic Data},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {3},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1004068},
doi = {10.1371/JOURNAL.PCBI.1004068},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/FortneyGKPATJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HolzingerDJ14,
author = {Andreas Holzinger and
Matthias Dehmer and
Igor Jurisica},
title = {Knowledge Discovery and interactive Data Mining in Bioinformatics
- State-of-the-Art, future challenges and research directions},
journal = {{BMC} Bioinform.},
volume = {15},
number = {{S-6}},
pages = {I1},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-S6-I1},
doi = {10.1186/1471-2105-15-S6-I1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HolzingerDJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/lncs/HolzingerJ14,
author = {Andreas Holzinger and
Igor Jurisica},
editor = {Andreas Holzinger and
Igor Jurisica},
title = {Knowledge Discovery and Data Mining in Biomedical Informatics: The
Future Is in Integrative, Interactive Machine Learning Solutions},
booktitle = {Interactive Knowledge Discovery and Data Mining in Biomedical Informatics
- State-of-the-Art and Future Challenges},
series = {Lecture Notes in Computer Science},
volume = {8401},
pages = {1--18},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-43968-5\_1},
doi = {10.1007/978-3-662-43968-5\_1},
timestamp = {Tue, 14 May 2019 10:00:55 +0200},
biburl = {https://dblp.org/rec/series/lncs/HolzingerJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/lncs/OtasekPHJ14,
author = {David Otasek and
Chiara Pastrello and
Andreas Holzinger and
Igor Jurisica},
editor = {Andreas Holzinger and
Igor Jurisica},
title = {Visual Data Mining: Effective Exploration of the Biological Universe},
booktitle = {Interactive Knowledge Discovery and Data Mining in Biomedical Informatics
- State-of-the-Art and Future Challenges},
series = {Lecture Notes in Computer Science},
volume = {8401},
pages = {19--33},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-43968-5\_2},
doi = {10.1007/978-3-662-43968-5\_2},
timestamp = {Sat, 24 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/series/lncs/OtasekPHJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@book{DBLP:series/lncs/8401,
editor = {Andreas Holzinger and
Igor Jurisica},
title = {Interactive Knowledge Discovery and Data Mining in Biomedical Informatics
- State-of-the-Art and Future Challenges},
series = {Lecture Notes in Computer Science},
volume = {8401},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-662-43968-5},
doi = {10.1007/978-3-662-43968-5},
isbn = {978-3-662-43967-8},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/lncs/8401.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/VafaeeRBJ13,
author = {Fatemeh Vafaee and
Daniela Rosu and
Fiona Broackes{-}Carter and
Igor Jurisica},
title = {Novel semantic similarity measure improves an integrative approach
to predicting gene functional associations},
journal = {{BMC} Syst. Biol.},
volume = {7},
pages = {22},
year = {2013},
url = {https://doi.org/10.1186/1752-0509-7-22},
doi = {10.1186/1752-0509-7-22},
timestamp = {Sat, 05 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/VafaeeRBJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/FortneyXKGKJ13,
author = {Kristen Fortney and
Wing Xie and
Max Kotlyar and
Joshua Griesman and
Yulia Kotseruba and
Igor Jurisica},
title = {NetwoRx: connecting drugs to networks and phenotypes in \emph{Saccharomyces
cerevisiae}},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {720--727},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1106},
doi = {10.1093/NAR/GKS1106},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/FortneyXKGKJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PastrelloOFACSJ13,
author = {Chiara Pastrello and
David Otasek and
Kristen Fortney and
Giuseppe Agapito and
Mario Cannataro and
Elize Shirdel and
Igor Jurisica},
title = {Visual Data Mining of Biological Networks: One Size Does Not Fit All},
journal = {PLoS Comput. Biol.},
volume = {9},
number = {1},
year = {2013},
url = {https://doi.org/10.1371/journal.pcbi.1002833},
doi = {10.1371/JOURNAL.PCBI.1002833},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/PastrelloOFACSJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/dils/2013,
editor = {Christopher J. O. Baker and
Greg Butler and
Igor Jurisica},
title = {Data Integration in the Life Sciences - 9th International Conference,
{DILS} 2013, Montreal, QC, Canada, July 11-12, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7970},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-39437-9},
doi = {10.1007/978-3-642-39437-9},
isbn = {978-3-642-39436-2},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/dils/2013.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HeifetsJ12,
author = {Abraham Heifets and
Igor Jurisica},
title = {{SCRIPDB:} a portal for easy access to syntheses, chemicals and reactions
in patents},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {428--433},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr919},
doi = {10.1093/NAR/GKR919},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HeifetsJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/HeifetsJ12,
author = {Abraham Heifets and
Igor Jurisica},
editor = {J{\"{o}}rg Hoffmann and
Bart Selman},
title = {Construction of New Medicines via Game Proof Search},
booktitle = {Proceedings of the Twenty-Sixth {AAAI} Conference on Artificial Intelligence,
July 22-26, 2012, Toronto, Ontario, Canada},
pages = {1564--1570},
publisher = {{AAAI} Press},
year = {2012},
url = {https://doi.org/10.1609/aaai.v26i1.8331},
doi = {10.1609/AAAI.V26I1.8331},
timestamp = {Mon, 04 Sep 2023 15:56:47 +0200},
biburl = {https://dblp.org/rec/conf/aaai/HeifetsJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YanBJ11,
author = {Rui Yan and
Paul C. Boutros and
Igor Jurisica},
title = {A tree-based approach for motif discovery and sequence classification},
journal = {Bioinform.},
volume = {27},
number = {15},
pages = {2054--2061},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr353},
doi = {10.1093/BIOINFORMATICS/BTR353},
timestamp = {Thu, 09 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YanBJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WaldronPTSHJ11,
author = {Levi Waldron and
Melania Pintilie and
Ming{-}Sound Tsao and
Frances A. Shepherd and
Curtis Huttenhower and
Igor Jurisica},
title = {Optimized application of penalized regression methods to diverse genomic
data},
journal = {Bioinform.},
volume = {27},
number = {24},
pages = {3399--3406},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr591},
doi = {10.1093/BIOINFORMATICS/BTR591},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WaldronPTSHJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/YakhiniJ11,
author = {Zohar Yakhini and
Igor Jurisica},
title = {Cancer Computational Biology},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {120},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-120},
doi = {10.1186/1471-2105-12-120},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/YakhiniJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/im/DjebbariAOKFWHJ11,
author = {Amira Djebbari and
Muhammad Ali and
David Otasek and
Max Kotlyar and
Kristen Fortney and
Serene Wong and
Anthony Hrvojic and
Igor Jurisica},
title = {NAViGaTOR: Large Scalable and Interactive Navigation and Analysis
of Large Graphs},
journal = {Internet Math.},
volume = {7},
number = {4},
pages = {314--347},
year = {2011},
url = {https://doi.org/10.1080/15427951.2011.604289},
doi = {10.1080/15427951.2011.604289},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/im/DjebbariAOKFWHJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/widm/ArshadiJ11,
author = {Niloofar Arshadi and
Igor Jurisica},
title = {Ensembles of case-based reasoning classifiers in high-dimensional
biological domains},
journal = {WIREs Data Mining Knowl. Discov.},
volume = {1},
number = {2},
pages = {164--171},
year = {2011},
url = {https://doi.org/10.1002/widm.22},
doi = {10.1002/WIDM.22},
timestamp = {Fri, 21 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/widm/ArshadiJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cascon/DjebbariJ01,
author = {Amira Djebbari and
Igor Jurisica},
editor = {Joanna W. Ng and
Christian Couturier and
Marin Litoiu and
Eleni Stroulia},
title = {Next-generation, scalable network visualization and analysis},
booktitle = {Center for Advanced Studies on Collaborative Research, {CASCON} '11,
Toronto, ON, Canada, November 7-10, 2011},
pages = {316--317},
publisher = {{IBM} / {ACM}},
year = {2011},
url = {http://dl.acm.org/citation.cfm?id=2093926},
timestamp = {Fri, 30 Nov 2018 02:24:54 +0100},
biburl = {https://dblp.org/rec/conf/cascon/DjebbariJ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NiuOJ10,
author = {Yun Niu and
David Otasek and
Igor Jurisica},
title = {Evaluation of linguistic features useful in extraction of interactions
from PubMed; Application to annotating known, high-throughput and
predicted interactions in I\({}^{\mbox{2}}\)D},
journal = {Bioinform.},
volume = {26},
number = {1},
pages = {111--119},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btp602},
doi = {10.1093/BIOINFORMATICS/BTP602},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NiuOJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tvcg/ViauMCJ10,
author = {Christophe Viau and
Michael J. McGuffin and
Yves Chiricota and
Igor Jurisica},
title = {The FlowVizMenu and Parallel Scatterplot Matrix: Hybrid Multidimensional
Visualizations for Network Exploration},
journal = {{IEEE} Trans. Vis. Comput. Graph.},
volume = {16},
number = {6},
pages = {1100--1108},
year = {2010},
url = {https://doi.org/10.1109/TVCG.2010.205},
doi = {10.1109/TVCG.2010.205},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tvcg/ViauMCJ10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccbr/XiaJWS10,
author = {Edward Xia and
Igor Jurisica and
Julie Waterhouse and
Valerie Sloan},
editor = {Isabelle Bichindaritz and
Stefania Montani},
title = {Runtime Estimation Using the Case-Based Reasoning Approach for Scheduling
in a Grid Environment},
booktitle = {Case-Based Reasoning. Research and Development, 18th International
Conference on Case-Based Reasoning, {ICCBR} 2010, Alessandria, Italy,
July 19-22, 2010. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {6176},
pages = {525--539},
publisher = {Springer},
year = {2010},
url = {https://doi.org/10.1007/978-3-642-14274-1\_38},
doi = {10.1007/978-3-642-14274-1\_38},
timestamp = {Tue, 14 May 2019 10:00:52 +0200},
biburl = {https://dblp.org/rec/conf/iccbr/XiaJWS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrownOAMXDTJ09,
author = {Kevin R. Brown and
David Otasek and
Muhammad Ali and
Michael J. McGuffin and
Wing Xie and
Baiju Devani and
Ian Lawson van Toch and
Igor Jurisica},
title = {NAViGaTOR: Network Analysis, Visualization and Graphing Toronto},
journal = {Bioinform.},
volume = {25},
number = {24},
pages = {3327--3329},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp595},
doi = {10.1093/BIOINFORMATICS/BTP595},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrownOAMXDTJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tvcg/McGuffinJ09,
author = {Michael J. McGuffin and
Igor Jurisica},
title = {Interaction Techniques for Selecting and Manipulating Subgraphs in
Network Visualizations},
journal = {{IEEE} Trans. Vis. Comput. Graph.},
volume = {15},
number = {6},
pages = {937--944},
year = {2009},
url = {https://doi.org/10.1109/TVCG.2009.151},
doi = {10.1109/TVCG.2009.151},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tvcg/McGuffinJ09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/birthday/ChaudhriJKPT09,
author = {Vinay K. Chaudhri and
Igor Jurisica and
Manolis Koubarakis and
Dimitris Plexousakis and
Thodoros Topaloglou},
editor = {Alexander Borgida and
Vinay K. Chaudhri and
Paolo Giorgini and
Eric S. K. Yu},
title = {The {KBMS} Project and Beyond},
booktitle = {Conceptual Modeling: Foundations and Applications - Essays in Honor
of John Mylopoulos},
series = {Lecture Notes in Computer Science},
volume = {5600},
pages = {466--482},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-02463-4\_24},
doi = {10.1007/978-3-642-02463-4\_24},
timestamp = {Tue, 14 May 2019 10:00:52 +0200},
biburl = {https://dblp.org/rec/conf/birthday/ChaudhriJKPT09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/nldb/NiuJ08,
author = {Yun Niu and
Igor Jurisica},
editor = {Epaminondas Kapetanios and
Vijayan Sugumaran and
Myra Spiliopoulou},
title = {Detecting Protein-Protein Interaction Sentences Using a Mixture Model},
booktitle = {Natural Language and Information Systems, 13th International Conference
on Applications of Natural Language to Information Systems, {NLDB}
2008, London, UK, June 24-27, 2008, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5039},
pages = {352--354},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-69858-6\_42},
doi = {10.1007/978-3-540-69858-6\_42},
timestamp = {Tue, 14 May 2019 10:00:53 +0200},
biburl = {https://dblp.org/rec/conf/nldb/NiuJ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/grc/YanBJP07,
author = {Rui Yan and
Paul C. Boutros and
Igor Jurisica and
Linda Z. Penn},
title = {Comparison of Machine Learning and Pattern Discovery Algorithms for
the Prediction of Human Single Nucleotide Polymorphisms},
booktitle = {2007 {IEEE} International Conference on Granular Computing, GrC 2007,
San Jose, California, USA, 2-4 November 2007},
pages = {452--457},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/GrC.2007.72},
doi = {10.1109/GRC.2007.72},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/grc/YanBJP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PrzuljCJ06,
author = {Natasa Przulj and
Derek G. Corneil and
Igor Jurisica},
title = {Efficient estimation of graphlet frequency distributions in protein-protein
interaction networks},
journal = {Bioinform.},
volume = {22},
number = {8},
pages = {974--980},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl030},
doi = {10.1093/BIOINFORMATICS/BTL030},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PrzuljCJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isf/JurisicaG06,
author = {Igor Jurisica and
Janice I. Glasgow},
title = {Introduction: Knowledge Discovery in High-Throughput Biological Domains},
journal = {Inf. Syst. Frontiers},
volume = {8},
number = {1},
pages = {5--7},
year = {2006},
url = {https://doi.org/10.1007/s10796-005-6098-o},
doi = {10.1007/S10796-005-6098-O},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/isf/JurisicaG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isf/KotlyarJ06,
author = {Max Kotlyar and
Igor Jurisica},
title = {Predicting Protein-Protein Interactions by Association Mining},
journal = {Inf. Syst. Frontiers},
volume = {8},
number = {1},
pages = {37--47},
year = {2006},
url = {https://doi.org/10.1007/s10796-005-6102-8},
doi = {10.1007/S10796-005-6102-8},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/isf/KotlyarJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cascon/XiaJW06,
author = {Edward Xia and
Igor Jurisica and
Julie Waterhouse},
editor = {Hakan Erdogmus and
Eleni Stroulia and
Darlene A. Stewart},
title = {CasSim: a top-level-simulator for grid scheduling and applications},
booktitle = {Proceedings of the 2006 conference of the Centre for Advanced Studies
on Collaborative Research, October 16-19, 2006, Toronto, Ontario,
Canada},
pages = {353--356},
publisher = {{IBM}},
year = {2006},
url = {https://doi.org/10.1145/1188966.1189008},
doi = {10.1145/1188966.1189008},
timestamp = {Fri, 30 Nov 2018 02:24:54 +0100},
biburl = {https://dblp.org/rec/conf/cascon/XiaJW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BrownJ05,
author = {Kevin R. Brown and
Igor Jurisica},
title = {Online Predicted Human Interaction Database},
journal = {Bioinform.},
volume = {21},
number = {9},
pages = {2076--2082},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti273},
doi = {10.1093/BIOINFORMATICS/BTI273},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BrownJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tkde/ArshadiJ05,
author = {Niloofar Arshadi and
Igor Jurisica},
title = {Data Mining for Case-Based Reasoning in High-Dimensional Biological
Domains},
journal = {{IEEE} Trans. Knowl. Data Eng.},
volume = {17},
number = {8},
pages = {1127--1137},
year = {2005},
url = {https://doi.org/10.1109/TKDE.2005.124},
doi = {10.1109/TKDE.2005.124},
timestamp = {Sat, 20 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tkde/ArshadiJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cascon/XiaJWS05,
author = {Edward Xia and
Igor Jurisica and
Julie Waterhouse and
Valerie Sloan},
editor = {James R. Cordy and
Anatol W. Kark and
Darlene A. Stewart},
title = {Scheduling functional regression tests for {IBM} {DB2} products},
booktitle = {Proceedings of the 2005 conference of the Centre for Advanced Studies
on Collaborative Research, October 17-20, 2005, Toronto, Ontario,
Canada},
pages = {292--304},
publisher = {{IBM}},
year = {2005},
url = {https://dl.acm.org/citation.cfm?id=1105656},
timestamp = {Fri, 30 Nov 2018 02:24:54 +0100},
biburl = {https://dblp.org/rec/conf/cascon/XiaJWS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/flairs/ArshadiJ05,
author = {Niloofar Arshadi and
Igor Jurisica},
editor = {Ingrid Russell and
Zdravko Markov},
title = {Feature Selection for Improving Case-Based Classifiers on High-Dimensional
Data Sets},
booktitle = {Proceedings of the Eighteenth International Florida Artificial Intelligence
Research Society Conference, Clearwater Beach, Florida, {USA}},
pages = {99--104},
publisher = {{AAAI} Press},
year = {2005},
url = {http://www.aaai.org/Library/FLAIRS/2005/flairs05-017.php},
timestamp = {Wed, 26 Oct 2022 08:35:28 +0200},
biburl = {https://dblp.org/rec/conf/flairs/ArshadiJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccbr/ArshadiJ05,
author = {Niloofar Arshadi and
Igor Jurisica},
editor = {H{\'{e}}ctor Mu{\~{n}}oz{-}Avila and
Francesco Ricci},
title = {An Ensemble of Case-Based Classifiers for High-Dimensional Biological
Domains},
booktitle = {Case-Based Reasoning, Research and Development, 6th International
Conference, on Case-Based Reasoning, {ICCBR} 2005, Chicago, IL, USA,
August 23-26, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3620},
pages = {21--34},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11536406\_5},
doi = {10.1007/11536406\_5},
timestamp = {Tue, 14 May 2019 10:00:52 +0200},
biburl = {https://dblp.org/rec/conf/iccbr/ArshadiJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aim/GlasgowJR04,
author = {Janice I. Glasgow and
Igor Jurisica and
Burkhard Rost},
title = {{AI} and Bioinformatics},
journal = {{AI} Mag.},
volume = {25},
number = {1},
pages = {7--8},
year = {2004},
url = {https://doi.org/10.1609/aimag.v25i1.1743},
doi = {10.1609/AIMAG.V25I1.1743},
timestamp = {Tue, 25 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/aim/GlasgowJR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aim/JurisicaG04,
author = {Igor Jurisica and
Janice I. Glasgow},
title = {Applications of Case-Based Reasoning in Molecular Biology},
journal = {{AI} Mag.},
volume = {25},
number = {1},
pages = {85--96},
year = {2004},
url = {https://doi.org/10.1609/aimag.v25i1.1749},
doi = {10.1609/AIMAG.V25I1.1749},
timestamp = {Tue, 25 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/aim/JurisicaG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PrzuljWJ04,
author = {Natasa Przulj and
Dennis A. Wigle and
Igor Jurisica},
title = {Functional topology in a network of protein interactions},
journal = {Bioinform.},
volume = {20},
number = {3},
pages = {340--348},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/btg415},
doi = {10.1093/BIOINFORMATICS/BTG415},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PrzuljWJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KingPJ04,
author = {Andrew D. King and
Natasa Przulj and
Igor Jurisica},
title = {Protein complex prediction via cost-based clustering},
journal = {Bioinform.},
volume = {20},
number = {17},
pages = {3013--3020},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth351},
doi = {10.1093/BIOINFORMATICS/BTH351},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KingPJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PrzuljCJ04,
author = {Natasa Przulj and
Derek G. Corneil and
Igor Jurisica},
title = {Modeling interactome: scale-free or geometric?},
journal = {Bioinform.},
volume = {20},
number = {18},
pages = {3508--3515},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth436},
doi = {10.1093/BIOINFORMATICS/BTH436},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/PrzuljCJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/kais/JurisicaMY04,
author = {Igor Jurisica and
John Mylopoulos and
Eric S. K. Yu},
title = {Ontologies for Knowledge Management: An Information Systems Perspective},
journal = {Knowl. Inf. Syst.},
volume = {6},
number = {4},
pages = {380--401},
year = {2004},
url = {https://doi.org/10.1007/s10115-003-0135-4},
doi = {10.1007/S10115-003-0135-4},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/kais/JurisicaMY04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ewcbr/ArshadiJ04,
author = {Niloofar Arshadi and
Igor Jurisica},
editor = {Peter Funk and
Pedro A. Gonz{\'{a}}lez{-}Calero},
title = {Maintaining Case-Based Reasoning Systems: {A} Machine Learning Approach},
booktitle = {Advances in Case-Based Reasoning, 7th European Conference, {ECCBR}
2004, Madrid, Spain, August 30 - September 2, 2004, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3155},
pages = {17--31},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-28631-8\_3},
doi = {10.1007/978-3-540-28631-8\_3},
timestamp = {Mon, 15 Feb 2021 14:16:47 +0100},
biburl = {https://dblp.org/rec/conf/ewcbr/ArshadiJ04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/SultanWCMGTJ02,
author = {Mujahid Sultan and
Dennis A. Wigle and
Christian A. Cumbaa and
Marlena Maziarz and
Janice I. Glasgow and
Ming{-}Sound Tsao and
Igor Jurisica},
title = {Binary tree-structured vector quantization approach to clustering
and visualizing microarray data},
booktitle = {Proceedings of the Tenth International Conference on Intelligent Systems
for Molecular Biology, August 3-7, 2002, Edmonton, Alberta, Canada},
pages = {111--119},
year = {2002},
timestamp = {Mon, 26 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ismb/SultanWCMGTJ02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/expert/JurisicaRGCWLD01,
author = {Igor Jurisica and
Patrick Rogers and
Janice I. Glasgow and
Robert J. Collins and
Jennifer R. Wolfley and
Joseph R. Luft and
George T. DeTitta},
title = {Improving Objectivity and Scalability in Protein Crystallization:
Integrating Image Analysis With Knowledge Discovery},
journal = {{IEEE} Intell. Syst.},
volume = {16},
number = {6},
pages = {26--34},
year = {2001},
url = {https://doi.org/10.1109/5254.972075},
doi = {10.1109/5254.972075},
timestamp = {Fri, 06 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/expert/JurisicaRGCWLD01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ibmsj/JurisicaRGFLWBWD01,
author = {Igor Jurisica and
Patrick Rogers and
Janice I. Glasgow and
Suzanne Fortier and
Joseph R. Luft and
Jennifer R. Wolfley and
Melissa A. Bianca and
Daniel R. Weeks and
George T. DeTitta},
title = {Intelligent decision support for protein crystal growth},
journal = {{IBM} Syst. J.},
volume = {40},
number = {2},
pages = {394--409},
year = {2001},
url = {https://doi.org/10.1147/sj.402.0394},
doi = {10.1147/SJ.402.0394},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ibmsj/JurisicaRGFLWBWD01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iaai/JurisicaRGFLBCD01,
author = {Igor Jurisica and
Phil Rogers and
Janice I. Glasgow and
Suzanne Fortier and
Joseph R. Luft and
Melissa A. Bianca and
Robert J. Collins and
George T. DeTitta},
editor = {Haym Hirsh and
Steve A. Chien},
title = {Image-Feature Extraction for Protein Crystallization: Integrating
Image Analysis and Case-Based Reasoning},
booktitle = {Proceedings of the Thirteenth Innovative Applications of Artificial
Intelligence Conference, August 7-9, 2001, Seattle, Washington, {USA}},
pages = {73--80},
publisher = {{AAAI}},
year = {2001},
timestamp = {Tue, 14 Jun 2005 12:18:23 +0200},
biburl = {https://dblp.org/rec/conf/iaai/JurisicaRGFLBCD01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/apin/JurisicaGM00,
author = {Igor Jurisica and
Janice I. Glasgow and
John Mylopoulos},
title = {Incremental Iterative Retrieval and Browsing for Efficient Conversational
{CBR} Systems},
journal = {Appl. Intell.},
volume = {12},
number = {3},
pages = {251--268},
year = {2000},
url = {https://doi.org/10.1023/A:1008375309626},
doi = {10.1023/A:1008375309626},
timestamp = {Wed, 17 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/apin/JurisicaGM00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/kdd/FloratosJR00,
author = {Aris Floratos and
Igor Jurisica and
Isidore Rigoutsos},
editor = {Raymond T. Ng},
title = {Knowledge discovery in biological domains (tutorial {AM-3)}},
booktitle = {Tutorial notes of the sixth {ACM} {SIGKDD} international conference
on Knowledge discovery and data mining, {KDD} 2000, Boston, Massachusetts,
USA, August 20-23, 2000},
pages = {95--163},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/349093.349104},
doi = {10.1145/349093.349104},
timestamp = {Thu, 23 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/kdd/FloratosJR00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/JurisicaG00,
author = {Igor Jurisica and
Janice I. Glasgow},
editor = {Barrett R. Bryant and
Janice H. Carroll and
Ernesto Damiani and
Hisham Haddad and
Dave Oppenheim},
title = {Extending Case-Based Reasoning by Discovering and Using Image Features
in {IVF}},
booktitle = {Applied Computing 2000, Proceedings of the 2000 {ACM} Symposium on
Applied Computing, Villa Olmo, Via Cantoni 1, 22100 Como, Italy, March
19-21, 2000. Volume 1},
pages = {52--59},
publisher = {{ACM}},
year = {2000},
url = {https://doi.org/10.1145/335603.335693},
doi = {10.1145/335603.335693},
timestamp = {Tue, 06 Nov 2018 11:06:45 +0100},
biburl = {https://dblp.org/rec/conf/sac/JurisicaG00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/ca/Jurisica98,
author = {Igor Jurisica},
title = {{TA3:} theory, implementation, and applications of similarity-based
retrieval for case-based reasoning},
school = {University of Toronto, Canada},
year = {1998},
url = {https://librarysearch.library.utoronto.ca/permalink/01UTORONTO\_INST/14bjeso/alma991106032783206196},
timestamp = {Wed, 10 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/ca/Jurisica98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/JurisicaMGSC98,
author = {Igor Jurisica and
John Mylopoulos and
Janice I. Glasgow and
Heather Shapiro and
Robert F. Casper},
title = {Case-based reasoning in {IVF:} prediction and knowledge mining},
journal = {Artif. Intell. Medicine},
volume = {12},
number = {1},
pages = {1--24},
year = {1998},
url = {https://doi.org/10.1016/S0933-3657(97)00037-7},
doi = {10.1016/S0933-3657(97)00037-7},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/artmed/JurisicaMGSC98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/caise/JurisicaN98,
author = {Igor Jurisica and
Brian A. Nixon},
editor = {Barbara Pernici and
Costantino Thanos},
title = {Building Quality into Case-Based Reasoning Systems},
booktitle = {Advanced Information Systems Engineering, 10th International Conference
CAiSE'98, Pisa, Italy, June 8-12, 1998, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {1413},
pages = {363--380},
publisher = {Springer},
year = {1998},
url = {https://doi.org/10.1007/BFb0054235},
doi = {10.1007/BFB0054235},
timestamp = {Tue, 14 May 2019 10:00:36 +0200},
biburl = {https://dblp.org/rec/conf/caise/JurisicaN98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ieaaie/JurisicaG98,
author = {Igor Jurisica and
Janice I. Glasgow},
editor = {Angel P. del Pobil and
Jos{\'{e}} Mira and
Moonis Ali},
title = {An Efficient Approach to Iterative Browsing and Retrieval for Case-Based
Reasoning},
booktitle = {Tasks and Methods in Applied Artificial Intelligence, 11th International
Conference on Industrial and Engineering Applications of Artificial
In telligence and Expert Systems, IEA/AIE-98, Castell{\'{o}}n,
Spain, June 1-4, 1998, Proceedings, Volume {II}},
series = {Lecture Notes in Computer Science},
volume = {1416},
pages = {535--546},
publisher = {Springer},
year = {1998},
url = {https://doi.org/10.1007/3-540-64574-8\_439},
doi = {10.1007/3-540-64574-8\_439},
timestamp = {Tue, 29 Dec 2020 18:33:32 +0100},
biburl = {https://dblp.org/rec/conf/ieaaie/JurisicaG98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wcre/Dayani-FardJ98,
author = {Homayoun Dayani{-}Fard and
Igor Jurisica},
title = {Reverse Engineering by Mining Dynamic Repositories},
booktitle = {5th Working Conference on Reverse Engineering, {WCRE} '98, Honolulu,
Hawai, USA, October 12-14, 1998},
pages = {174--182},
publisher = {{IEEE} Computer Society},
year = {1998},
url = {https://doi.org/10.1109/WCRE.1998.723187},
doi = {10.1109/WCRE.1998.723187},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/wcre/Dayani-FardJ98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijait/JurisicaG97,
author = {Igor Jurisica and
Janice I. Glasgow},
title = {Improving Performance of Case-Based Classification Using Context-Based
Relevance},
journal = {Int. J. Artif. Intell. Tools},
volume = {6},
number = {4},
pages = {511--536},
year = {1997},
url = {https://doi.org/10.1142/S0218213097000268},
doi = {10.1142/S0218213097000268},
timestamp = {Tue, 12 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijait/JurisicaG97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cascon/Jurisica97,
author = {Igor Jurisica},
editor = {J. Howard Johnson},
title = {Similarity-based retrieval for diverse bookshelf software repository
users},
booktitle = {Proceedings of the 1997 conference of the Centre for Advanced Studies
on Collaborative Research, November 10-13, 1997, Toronto, Ontario,
Canada},
pages = {10},
publisher = {{IBM}},
year = {1997},
url = {https://dl.acm.org/citation.cfm?id=782020},
timestamp = {Fri, 30 Nov 2018 02:24:54 +0100},
biburl = {https://dblp.org/rec/conf/cascon/Jurisica97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ictai/JurisicaG96,
author = {Igor Jurisica and
Janice I. Glasgow},
title = {Case-Based Classification Using Similarity-Based Retrieval},
booktitle = {Eigth International Conference on Tools with Artificial Intelligence,
{ICTAI} '96, Toulouse, France, November 16-19, 1996},
pages = {410--419},
publisher = {{IEEE} Computer Society},
year = {1996},
url = {https://doi.org/10.1109/TAI.1996.560735},
doi = {10.1109/TAI.1996.560735},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ictai/JurisicaG96.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aaai/GreinerJ92,
author = {Russell Greiner and
Igor Jurisica},
editor = {William R. Swartout},
title = {A Statistical Approach to Solving the {EBL} Utility Problem},
booktitle = {Proceedings of the 10th National Conference on Artificial Intelligence,
San Jose, CA, USA, July 12-16, 1992},
pages = {241--248},
publisher = {{AAAI} Press / The {MIT} Press},
year = {1992},
url = {http://www.aaai.org/Library/AAAI/1992/aaai92-038.php},
timestamp = {Mon, 04 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/aaai/GreinerJ92.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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