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ORCIDBibTeX records: Pankaj Jaiswal
@article{DBLP:journals/frai/ThessenCSHREJ23,
author = {Anne E. Thessen and
Laurel Cooper and
Tyson L. Swetnam and
Harshad Hegde and
Justin T. Reese and
Justin Elser and
Pankaj Jaiswal},
title = {Using knowledge graphs to infer gene expression in plants},
journal = {Frontiers Artif. Intell.},
volume = {6},
year = {2023},
url = {https://doi.org/10.3389/frai.2023.1201002},
doi = {10.3389/FRAI.2023.1201002},
timestamp = {Fri, 22 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/frai/ThessenCSHREJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2308-16435,
author = {Jonathan S. Koning and
Ashwin Subramanian and
Mazen Alotaibi and
Cara L. Appel and
Christopher M. Sullivan and
Thon Chao and
Lisa Truong and
Robyn L. Tanguay and
Pankaj Jaiswal and
Taal Levi and
Damon B. Lesmeister},
title = {Njobvu-AI: An open-source tool for collaborative image labeling and
implementation of computer vision models},
journal = {CoRR},
volume = {abs/2308.16435},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2308.16435},
doi = {10.48550/ARXIV.2308.16435},
eprinttype = {arXiv},
eprint = {2308.16435},
timestamp = {Mon, 04 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2308-16435.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/YatesAAABBBCMCC22,
author = {Andrew D. Yates and
James E. Allen and
M. Ridwan Amode and
Andrey G. Azov and
Matthieu Barba and
Andr{\'{e}}s Becerra and
Jyothish Bhai and
Lahcen I. Campbell and
Manuel Carbajo Martinez and
Marc Chakiachvili and
Kapeel Chougule and
Mikkel B. Christensen and
Bruno Contreras{-}Moreira and
Alayne Cuzick and
Luca Da Rin Fioretto and
Paul Davis and
Nishadi De Silva and
Stavros Diamantakis and
Sarah Dyer and
Justin Elser and
Carla V. Filippi and
Astrid Gall and
Dionysios Grigoriadis and
Cristina Guijarro{-}Clarke and
Parul Gupta and
Kim E. Hammond{-}Kosack and
Kevin L. Howe and
Pankaj Jaiswal and
Vinay Kaikala and
Vivek Kumar and
Sunita Kumari and
Nick Langridge and
Tuan Le and
Manuel Luypaert and
Gareth Maslen and
Thomas Maurel and
Benjamin Moore and
Matthieu Muffato and
Aleena Mushtaq and
Guy Naamati and
Sushma Naithani and
Andrew Olson and
Anne Parker and
Michael Paulini and
Helder Pedro and
Emily Perry and
Justin Preece and
Mark Quinton{-}Tulloch and
Faye Rodgers and
Marc Rosello and
Magali Ruffier and
James Seager and
Vasily Sitnik and
Michal Szpak and
John G. Tate and
Marcela K. Tello{-}Ruiz and
Stephen J. Trevanion and
Martin Urban and
Doreen Ware and
Sharon Wei and
Gary Williams and
Andrea Winterbottom and
Magdalena Zarowiecki and
Robert D. Finn and
Paul Flicek},
title = {Ensembl Genomes 2022: an expanding genome resource for non-vertebrates},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {996--1003},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1007},
doi = {10.1093/NAR/GKAB1007},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/YatesAAABBBCMCC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Tello-RuizNGOWP21,
author = {Marcela K. Tello{-}Ruiz and
Sushma Naithani and
Parul Gupta and
Andrew Olson and
Sharon Wei and
Justin Preece and
Yinping Jiao and
Bo Wang and
Kapeel Chougule and
Priyanka Garg and
Justin Elser and
Sunita Kumari and
Vivek Kumar and
Bruno Contreras{-}Moreira and
Guy Naamati and
Nancy George and
Justin Cook and
Dan M. Bolser and
Peter D'Eustachio and
Lincoln D. Stein and
Amit Gupta and
Weijia Xu and
Jennifer Regala and
Irene Papatheodorou and
Paul J. Kersey and
Paul Flicek and
Crispin Taylor and
Pankaj Jaiswal and
Doreen Ware},
title = {Gramene 2021: harnessing the power of comparative genomics and pathways
for plant research},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D1452--D1463},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa979},
doi = {10.1093/NAR/GKAA979},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Tello-RuizNGOWP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CarbonDGUHMBCDH21,
author = {Seth Carbon and
Eric Douglass and
Benjamin M. Good and
Deepak R. Unni and
Nomi L. Harris and
Christopher J. Mungall and
Siddartha Basu and
Rex L. Chisholm and
Robert J. Dodson and
Eric Hartline and
Petra Fey and
Paul D. Thomas and
Laurent{-}Philippe Albou and
Dustin Ebert and
Michael J. Kesling and
Huaiyu Mi and
Anushya Muruganujan and
Xiaosong Huang and
Tremayne Mushayahama and
Sandra A. LaBonte and
Deborah A. Siegele and
Giulia Antonazzo and
Helen Attrill and
Nick H. Brown and
Phani V. Garapati and
Steven J. Marygold and
Vitor Trovisco and
Gilberto dos Santos and
Kathleen Falls and
Christopher J. Tabone and
Pinglei Zhou and
Joshua L. Goodman and
Victor B. Strelets and
Jim Thurmond and
Penelope Garmiri and
Rizwan Ishtiaq and
Milagros Rodr{\'{\i}}guez{-}L{\'{o}}pez and
Marcio Luis Acencio and
Martin Kuiper and
Astrid L{\ae}greid and
Colin Logie and
Ruth C. Lovering and
Barbara Kramarz and
Shirin C. C. Saverimuttu and
Sandra M. Pinheiro and
Heather Gunn and
Renzhi Su and
Katherine E. Thurlow and
Marcus C. Chibucos and
Michelle G. Giglio and
Suvarna Nadendla and
James B. Munro and
Rebecca C. Jackson and
Margaret J. Duesbury and
Noemi del{-}Toro and
Birgit H. M. Meldal and
Kalpana Paneerselvam and
Livia Perfetto and
Pablo Porras and
Sandra E. Orchard and
Anjali Shrivastava and
Hsin{-}Yu Chang and
Robert D. Finn and
Alex L. Mitchell and
Neil D. Rawlings and
Lorna J. Richardson and
Amaia Sangrador{-}Vegas and
Judith A. Blake and
Karen R. Christie and
Mary E. Dolan and
Harold J. Drabkin and
David P. Hill and
Li Ni and
Dmitry M. Sitnikov and
Midori A. Harris and
Stephen G. Oliver and
Kim Rutherford and
Valerie Wood and
Jaqueline Hayles and
J{\"{u}}rg B{\"{a}}hler and
Elizabeth R. Bolton and
Jeffrey DePons and
Melinda R. Dwinell and
G. Thomas Hayman and
Mary L. Kaldunski and
Anne E. Kwitek and
Stanley J. F. Laulederkind and
Cody Plasterer and
Marek Tutaj and
Mahima Vedi and
Shur{-}Jen Wang and
Peter D'Eustachio and
Lisa Matthews and
James P. Balhoff and
Suzi A. Aleksander and
Michael J. Alexander and
J. Michael Cherry and
Stacia R. Engel and
Felix Gondwe and
Kalpana Karra and
Stuart R. Miyasato and
Robert S. Nash and
Matt Simison and
Marek S. Skrzypek and
Shuai Weng and
Edith D. Wong and
Marc Feuermann and
Pascale Gaudet and
Anne Morgat and
Erica Bakker and
Tanya Z. Berardini and
Leonore Reiser and
Shabari Subramaniam and
Eva Huala and
Cecilia N. Arighi and
Andrea H. Auchincloss and
Kristian B. Axelsen and
Ghislaine Argoud{-}Puy and
Alex Bateman and
Marie{-}Claude Blatter and
Emmanuel Boutet and
Emily Bowler and
Lionel Breuza and
Alan J. Bridge and
Ramona Britto and
Hema Bye{-}A{-}Jee and
Cristina Casals{-}Casas and
Elisabeth Coudert and
Paul Denny and
Anne Estreicher and
Maria Livia Famiglietti and
George E. Georghiou and
Arnaud Gos and
Nadine Gruaz{-}Gumowski and
Emma Hatton{-}Ellis and
Chantal Hulo and
Alexandr Ignatchenko and
Florence Jungo and
Kati Laiho and
Philippe Le Mercier and
Damien Lieberherr and
Antonia Lock and
Yvonne Lussi and
Alistair MacDougall and
Michele Magrane and
Maria Jesus Martin and
Patrick Masson and
Darren A. Natale and
Nevila Hyka{-}Nouspikel and
Ivo Pedruzzi and
Lucille Pourcel and
Sylvain Poux and
Sangya Pundir and
Catherine Rivoire and
Elena Speretta and
Shyamala Sundaram and
Nidhi Tyagi and
Kate Warner and
Rossana Zaru and
Cathy H. Wu and
Alexander D. Diehl and
Juancarlos Chan and
Christian A. Grove and
Raymond Y. N. Lee and
Hans{-}Michael M{\"{u}}ller and
Daniela Raciti and
Kimberly Van Auken and
Paul W. Sternberg and
Matthew Berriman and
Michael Paulini and
Kevin L. Howe and
Sibyl Gao and
Adam Wright and
Lincoln Stein and
Douglas G. Howe and
Sabrina Toro and
Monte Westerfield and
Pankaj Jaiswal and
Laurel Cooper and
Justin Elser},
title = {The Gene Ontology resource: enriching a GOld mine},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D325--D334},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1113},
doi = {10.1093/NAR/GKAA1113},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/CarbonDGUHMBCDH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NaithaniGPDEGDK20,
author = {Sushma Naithani and
Parul Gupta and
Justin Preece and
Peter D'Eustachio and
Justin Elser and
Priyanka Garg and
Daemon A. Dikeman and
Jason Kiff and
Justin Cook and
Andrew Olson and
Sharon Wei and
Marcela K. Tello{-}Ruiz and
Antonio Fabregat Mundo and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Suhaib Mohammed and
Tiejun Cheng and
Evan Bolton and
Irene Papatheodorou and
Lincoln Stein and
Doreen Ware and
Pankaj Jaiswal},
title = {Plant Reactome: a knowledgebase and resource for comparative pathway
analysis},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D1093--D1103},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz996},
doi = {10.1093/NAR/GKZ996},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/NaithaniGPDEGDK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HoweCSMAAABBCCC20,
author = {Kevin L. Howe and
Bruno Contreras{-}Moreira and
Nishadi De Silva and
Gareth Maslen and
Wasiu A. Akanni and
James E. Allen and
Jorge {\'{A}}lvarez{-}Jarreta and
Matthieu Barba and
Dan M. Bolser and
Lahcen Cambell and
Manuel Carbajo and
Marc Chakiachvili and
Mikkel B. Christensen and
Carla A. Cummins and
Alayne Cuzick and
Paul Davis and
Silvie Fexova and
Astrid Gall and
Nancy George and
Laurent Gil and
Parul Gupta and
Kim E. Hammond{-}Kosack and
Erin Haskell and
Sarah E. Hunt and
Pankaj Jaiswal and
Sophie H. Janacek and
Paul J. Kersey and
Nick Langridge and
Uma Maheswari and
Thomas Maurel and
Mark D. McDowall and
Benjamin Moore and
Matthieu Muffato and
Guy Naamati and
Sushma Naithani and
Andrew Olson and
Irene Papatheodorou and
Mateus Patricio and
Michael Paulini and
Helder Pedro and
Emily Perry and
Justin Preece and
Marc Rosello and
Matthew Russell and
Vasily Sitnik and
Daniel M. Staines and
Joshua C. Stein and
Marcela K. Tello{-}Ruiz and
Stephen J. Trevanion and
Martin Urban and
Sharon Wei and
Doreen Ware and
Gary Williams and
Andrew D. Yates and
Paul Flicek},
title = {Ensembl Genomes 2020 - enabling non-vertebrate genomic research},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D689--D695},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz890},
doi = {10.1093/NAR/GKZ890},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HoweCSMAAABBCCC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/ArnaudLKALMCJKS20,
author = {Elizabeth Arnaud and
Marie{-}Ang{\'{e}}lique Laporte and
Soonho Kim and
C{\'{e}}line Aubert and
Sabina Leonelli and
Berta Miro and
Laurel Cooper and
Pankaj Jaiswal and
Gideon Kruseman and
Rosemary Shrestha and
Pier Luigi Buttigieg and
Christopher J. Mungall and
Julian Pietragalla and
Afolabi Agbona and
Jacqueline Muliro and
Jeffrey Detras and
Vilma Hualla and
Abhishek Rathore and
Roma Rani Das and
Ibnou Dieng and
Guillaume Bauchet and
Naama Menda and
Cyril Pommier and
Felix Shaw and
David Lyon and
Leroy Mwanzia and
Henry Juarez and
Enrico Bonaiuti and
Brian Chiputwa and
Oluremi Olatunbosun and
Sandrine Auzoux and
Esther Dzal{\'{e}} Yeumo and
Lukas A. Mueller and
Kevin A. T. Silverstein and
Alexandra Lafargue and
Erick Antezana and
Medha Devare and
Brian King},
title = {The Ontologies Community of Practice: {A} {CGIAR} Initiative for Big
Data in Agrifood Systems},
journal = {Patterns},
volume = {1},
number = {7},
pages = {100105},
year = {2020},
url = {https://doi.org/10.1016/j.patter.2020.100105},
doi = {10.1016/J.PATTER.2020.100105},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/patterns/ArnaudLKALMCJKS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/CooperLEBSMAJ20,
author = {Laurel Cooper and
Marie{-}Ang{\'{e}}lique Laporte and
Justin Elser and
Victoria Carollo Blake and
Taner Z. Sen and
Chris Mungall and
Elizabeth Arnaud and
Pankaj Jaiswal},
editor = {Janna Hastings and
Frank Loebe},
title = {The Plant Trait Ontology Links Wheat Traits for Crop Improvement and
Genomics (short paper)},
booktitle = {Proceedings of the 11th International Conference on Biomedical Ontologies
{(ICBO)} joint with the 10th Workshop on Ontologies and Data in Life
Sciences {(ODLS)} and part of the Bolzano Summer of Knowledge (BoSK
2020), Virtual conference hosted in Bolzano, Italy, September 17,
2020},
series = {{CEUR} Workshop Proceedings},
volume = {2807},
pages = {1--2},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2807/abstractT.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/CooperLEBSMAJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/NaithaniGPGFPMV19,
author = {Sushma Naithani and
Parul Gupta and
Justin Preece and
Priyanka Garg and
Valerie Fraser and
Lillian K. Padgitt{-}Cobb and
Matthew Martin and
Kelly Vining and
Pankaj Jaiswal},
title = {Involving community in genes and pathway curation},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {bay146},
year = {2019},
url = {https://doi.org/10.1093/database/bay146},
doi = {10.1093/DATABASE/BAY146},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/NaithaniGPGFPMV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dim/XuGJTLR19,
author = {Weijia Xu and
Amit Gupta and
Pankaj Jaiswal and
Crispin Taylor and
Patti Lockhart and
Jennifer Regala},
title = {Improving Publication Pipeline with Automated Biological Entity Detection
and Validation Service},
journal = {Data Inf. Manag.},
volume = {3},
number = {1},
pages = {3--17},
year = {2019},
url = {https://doi.org/10.2478/dim-2019-0003},
doi = {10.2478/DIM-2019-0003},
timestamp = {Wed, 05 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dim/XuGJTLR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/isf/GuptaCJ19,
author = {Parul Gupta and
Sumedha Chauhan and
Pankaj Jaiswal},
title = {Classification of Smart City Research - a Descriptive Literature Review
and Future Research Agenda},
journal = {Inf. Syst. Frontiers},
volume = {21},
number = {3},
pages = {661--685},
year = {2019},
url = {https://doi.org/10.1007/s10796-019-09911-3},
doi = {10.1007/S10796-019-09911-3},
timestamp = {Fri, 13 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/isf/GuptaCJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/xsede/GuptaXJTR19,
author = {Amit Gupta and
Weijia Xu and
Pankaj Jaiswal and
Crispin Taylor and
Jennifer Regala},
editor = {Thomas R. Furlani},
title = {Extracting Domain Information using Deep Learning},
booktitle = {Proceedings of the Practice and Experience in Advanced Research Computing
on Rise of the Machines (learning), {PEARC} 2019, Chicago, IL, USA,
July 28 - August 01, 2019},
pages = {67:1--67:7},
publisher = {{ACM}},
year = {2019},
url = {https://doi.org/10.1145/3332186.3332255},
doi = {10.1145/3332186.3332255},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/xsede/GuptaXJTR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HarperCCJPWAABB18,
author = {Lisa C. Harper and
Jacqueline D. Campbell and
Ethalinda K. S. Cannon and
Sook Jung and
Monica Poelchau and
Ramona L. Walls and
Carson M. Andorf and
Elizabeth Arnaud and
Tanya Z. Berardini and
Clayton L. Birkett and
Steven B. Cannon and
James D. Carson and
Bradford Condon and
Laurel Cooper and
Nathan A. Dunn and
Christine G. Elsik and
Andrew D. Farmer and
Stephen P. Ficklin and
David M. Grant and
Emily S. Grau and
Nic Herndon and
Zhi{-}Liang Hu and
Jodi L. Humann and
Pankaj Jaiswal and
Cl{\'{e}}ment Jonquet and
Marie{-}Ang{\'{e}}lique Laporte and
Pierre Larmande and
Gerard R. Lazo and
Fiona McCarthy and
Naama Menda and
Christopher J. Mungall and
Monica C. Munoz{-}Torres and
Sushma Naithani and
Rex T. Nelson and
Daureen Nesdill and
Carissa A. Park and
James M. Reecy and
Leonore Reiser and
Lacey{-}Anne Sanderson and
Taner Z. Sen and
Margaret Staton and
Sabarinath Subramaniam and
Marcela Karey Tello{-}Ruiz and
Victor Unda and
Deepak R. Unni and
Liya Wang and
Doreen Ware and
Jill L. Wegrzyn and
Jason Williams and
Margaret Woodhouse and
Jing Yu and
Doreen Main},
title = {AgBioData consortium recommendations for sustainable genomics and
genetics databases for agriculture},
journal = {Database J. Biol. Databases Curation},
volume = {2018},
pages = {bay088},
year = {2018},
url = {https://doi.org/10.1093/database/bay088},
doi = {10.1093/DATABASE/BAY088},
timestamp = {Tue, 25 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/HarperCCJPWAABB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CooperMLEMSCCD018,
author = {Laurel Cooper and
Austin Meier and
Marie{-}Ang{\'{e}}lique Laporte and
Justin Elser and
Chris Mungall and
Brandon T. Sinn and
Dario Cavaliere and
Seth Carbon and
Nathan A. Dunn and
Barry Smith and
Botong Qu and
Justin Preece and
Eugene Zhang and
Sinisa Todorovic and
Georgios V. Gkoutos and
John H. Doonan and
Dennis W. Stevenson and
Elizabeth Arnaud and
Pankaj Jaiswal},
title = {The Planteome database: an integrated resource for reference ontologies,
plant genomics and phenomics},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D1168--D1180},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx1152},
doi = {10.1093/NAR/GKX1152},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/CooperMLEMSCCD018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Tello-RuizNSGCO18,
author = {Marcela K. Tello{-}Ruiz and
Sushma Naithani and
Joshua C. Stein and
Parul Gupta and
Michael Campbell and
Andrew Olson and
Sharon Wei and
Justin Preece and
Matthew J. Geniza and
Yinping Jiao and
Young Koung Lee and
Bo Wang and
Joseph Mulvaney and
Kapeel Chougule and
Justin Elser and
Noor Al{-}Bader and
Sunita Kumari and
James Thomason and
Vivek Kumar and
Daniel M. Bolser and
Guy Naamati and
Electra Tapanari and
Nuno A. Fonseca and
Laura Huerta and
Haider Iqbal and
Maria Keays and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Y. Amy Tang and
Antonio Fabregat and
Peter D'Eustachio and
Joel Weiser and
Lincoln D. Stein and
Robert Petryszak and
Irene Papatheodorou and
Paul J. Kersey and
Patti Lockhart and
Crispin Taylor and
Pankaj Jaiswal and
Doreen Ware},
title = {Gramene 2018: unifying comparative genomics and pathway resources
for plant research},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D1181--D1189},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx1111},
doi = {10.1093/NAR/GKX1111},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Tello-RuizNSGCO18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PapatheodorouFK18,
author = {Irene Papatheodorou and
Nuno A. Fonseca and
Maria Keays and
Y. Amy Tang and
Elisabet Barrera and
Wojciech Bazant and
Melissa L. Burke and
Anja F{\"{u}}llgrabe and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Nancy George and
Laura Huerta and
Satu Koskinen and
Suhaib Mohammed and
Matthew J. Geniza and
Justin Preece and
Pankaj Jaiswal and
Andrew F. Jarnuczak and
Wolfgang Huber and
Oliver Stegle and
Juan Antonio Vizca{\'{\i}}no and
Alvis Brazma and
Robert Petryszak},
title = {Expression Atlas: gene and protein expression across multiple studies
and organisms},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D246--D251},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx1158},
doi = {10.1093/NAR/GKX1158},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PapatheodorouFK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/EndaraBCJLC18,
author = {Lorena Endara and
J. Gordon Burleigh and
Laurel Cooper and
Pankaj Jaiswal and
Marie{-}Ang{\'{e}}lique Laporte and
Hong Cui},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {A Natural Language Processing Pipeline to Extract Phenotypic Data
from Formal Taxonomic Descriptions with a Focus on Flagellate Plants},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_50.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/EndaraBCJLC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/GuptaXJTR18,
author = {Amit Gupta and
Weijia Xu and
Pankaj Jaiswal and
Crispin Taylor and
Jennifer Regala},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Domain Informational Vocabulary Extraction Experiences with Publication
Pipeline Integration and Ontology Curation},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_43.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/GuptaXJTR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/MeierLECPJP18,
author = {Austin Meier and
Marie{-}Ang{\'{e}}lique Laporte and
Justin Elser and
Laurel Cooper and
Justin Preece and
Pankaj Jaiswal and
Jorrit H. Poelen},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {{OOPS:} The Ontology of Plant Stress, {A} Semi-Automated Standardization
Methodology},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_25.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/MeierLECPJP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/TrigkakisPMEKFM18,
author = {Dimitrios Trigkakis and
Justin Preece and
Austin Meier and
Justin Elser and
Kristian Kvilekval and
Dmitry V. Fedorov and
B. S. Manjunath and
Pankaj Jaiswal and
Sinisa Todorovic},
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Planteome {\&} BisQue: Automating Image Annotation with Ontologies
using Deep-Learning Networks},
booktitle = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285/ICBO\_2018\_paper\_11.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/TrigkakisPMEKFM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/ssw/BraunBBCGHHJKLMSVWL18,
author = {Ian Braun and
James P. Balhoff and
Tanya Z. Berardini and
Laurel Cooper and
Georgios V. Gkoutos and
Lisa C. Harper and
Eva Huala and
Pankaj Jaiswal and
Toni Kazic and
Hilmar Lapp and
James A. Macklin and
Chelsea D. Specht and
Todd J. Vision and
Ramona L. Walls and
Carolyn J. Lawrence{-}Dill},
editor = {Anne E. Thessen},
title = {'Computable' Phenotypes Enable Comparative and Predictive Phenomics
Among Plant Species and Across Domains of Life},
booktitle = {Application of Semantic Technology in Biodiversity Science},
series = {Studies on the Semantic Web},
volume = {33},
pages = {187--205},
publisher = {{IOS} Press},
year = {2018},
url = {https://doi.org/10.3233/978-1-61499-854-9-187},
doi = {10.3233/978-1-61499-854-9-187},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/series/ssw/BraunBBCGHHJKLMSVWL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/icbo/2018,
editor = {Pankaj Jaiswal and
Laurel Cooper and
Melissa A. Haendel and
Christopher J. Mungall},
title = {Proceedings of the 9th International Conference on Biological Ontology
{(ICBO} 2018), Corvallis, Oregon, USA, August 7-10, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2285},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2285},
urn = {urn:nbn:de:0074-2285-4},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/2018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NaithaniPDGADWF17,
author = {Sushma Naithani and
Justin Preece and
Peter D'Eustachio and
Parul Gupta and
Vindhya Amarasinghe and
Palitha Dharmawardhana and
Guanming Wu and
Antonio Fabregat and
Justin Elser and
Joel Weiser and
Maria Keays and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Robert Petryszak and
Lincoln D. Stein and
Doreen Ware and
Pankaj Jaiswal},
title = {Plant Reactome: a resource for plant pathways and comparative analysis},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D1029--D1039},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw932},
doi = {10.1093/NAR/GKW932},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NaithaniPDGADWF17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/siggraph/QuKZJCE017,
author = {Botong Qu and
Prashant Kumar and
Eugene Zhang and
Pankaj Jaiswal and
Laurel Cooper and
Justin Elser and
Yue Zhang},
editor = {Koji Koyamada and
Puripant Ruchikachorn},
title = {Interactive design and visualization of N-ary relationships},
booktitle = {{SIGGRAPH} {ASIA} 2017, Bangkok, Thailand, November 27 - 30, 2017
- Symposium on Visualization},
pages = {15:1--15:8},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3139295.3139314},
doi = {10.1145/3139295.3139314},
timestamp = {Tue, 06 Nov 2018 16:59:16 +0100},
biburl = {https://dblp.org/rec/conf/siggraph/QuKZJCE017.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PetryszakKTFBBF16,
author = {Robert Petryszak and
Maria Keays and
Y. Amy Tang and
Nuno A. Fonseca and
Elisabet Barrera and
Tony Burdett and
Anja F{\"{u}}llgrabe and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Simon Jupp and
Satu Koskinen and
Oliver Mannion and
Laura Huerta and
Karine Megy and
Catherine Snow and
Eleanor Williams and
Mitra Barzine and
Emma Hastings and
Hendrik Weisser and
James C. Wright and
Pankaj Jaiswal and
Wolfgang Huber and
Jyoti Choudhary and
Helen E. Parkinson and
Alvis Brazma},
title = {Expression Atlas update - an integrated database of gene and protein
expression in humans, animals and plants},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {746--752},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1045},
doi = {10.1093/NAR/GKV1045},
timestamp = {Tue, 26 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PetryszakKTFBBF16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Tello-RuizSWPON16,
author = {Marcela K. Tello{-}Ruiz and
Joshua C. Stein and
Sharon Wei and
Justin Preece and
Andrew Olson and
Sushma Naithani and
Vindhya Amarasinghe and
Palitha Dharmawardhana and
Yinping Jiao and
Joseph Mulvaney and
Sunita Kumari and
Kapeel Chougule and
Justin Elser and
Bo Wang and
James Thomason and
Daniel M. Bolser and
Arnaud Kerhornou and
Brandon Walts and
Nuno A. Fonseca and
Laura Huerta and
Maria Keays and
Y. Amy Tang and
Helen E. Parkinson and
Antonio Fabregat and
Sheldon J. McKay and
Joel Weiser and
Peter D'Eustachio and
Lincoln Stein and
Robert Petryszak and
Paul J. Kersey and
Pankaj Jaiswal and
Doreen Ware},
title = {Gramene 2016: comparative plant genomics and pathway resources},
journal = {Nucleic Acids Res.},
volume = {44},
number = {Database-Issue},
pages = {1133--1140},
year = {2016},
url = {https://doi.org/10.1093/nar/gkv1179},
doi = {10.1093/NAR/GKV1179},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Tello-RuizSWPON16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/CooperMEPXKQZTJ16,
author = {Laurel Cooper and
Austin Meier and
Justin Elser and
Justin Preece and
Xu Xu and
Ryan Kitchen and
Botong Qu and
Eugene Zhang and
Sinisa Todorovic and
Pankaj Jaiswal and
Marie{-}Ang{\'{e}}lique Laporte and
Elizabeth Arnaud and
Seth Carbon and
Chris Mungall and
Barry Smith and
Georgios V. Gkoutos and
John H. Doonan},
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {The Planteome Project},
booktitle = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747/IT406-IP35\_ICBO2016.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/CooperMEPXKQZTJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/LaporteVCMMJA16,
author = {Marie{-}Ang{\'{e}}lique Laporte and
L{\'{e}}o Valette and
Laurel Cooper and
Chris Mungall and
Austin Meier and
Pankaj Jaiswal and
Elizabeth Arnaud},
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {Comparison of Ontology Mapping Techniques to Map Plant Trait Ontologies},
booktitle = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747/IP17\_ICBO2016.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/LaporteVCMMJA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/MeierCEJL16,
author = {Austin Meier and
Laurel Cooper and
Justin Elser and
Pankaj Jaiswal and
Marie{-}Ang{\'{e}}lique Laporte},
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {Annotating Germplasm to Planteome Reference Ontologies},
booktitle = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747/IT407\_ICBO2016.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/MeierCEJL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/PreeceEJKFMKXTT16,
author = {Justin Preece and
Justin Elser and
Pankaj Jaiswal and
Kristian Kvilekval and
Dmitry V. Fedorov and
B. S. Manjunath and
Ryan Kitchen and
Xu Xu and
Dmitrios Trigkakis and
Sinisa Todorovic and
Seth Carbon},
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {Plant Image Segmentation and Annotation with Ontologies in BisQue},
booktitle = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747/D101\_ICBO2016.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/PreeceEJKFMKXTT16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/QuDZEJCM16,
author = {Botong Qu and
Jaden Diefenbaugh and
Eugene Zhang and
Justin Elser and
Pankaj Jaiswal and
Seth Carbon and
Christopher J. Mungall},
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {Planteome Gene Annotation Enrichment Analysis},
booktitle = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747/IP31\_ICBO2016.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/QuDZEJCM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/XuGJTL16,
author = {Weijia Xu and
Amit Gupta and
Pankaj Jaiswal and
Crispin Taylor and
Patti Lockhart},
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {Enhancing Information Accessibility of Publications with Text Mining
and Ontology},
booktitle = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747/D106-BP04\_ICBO2016.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/XuGJTL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/XuGJTL16a,
author = {Weijia Xu and
Amit Gupta and
Pankaj Jaiswal and
Crispin Taylor and
Patti Lockhart},
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {A Web Application for Extracting Key Domain Information for Scientific
Publications Using Ontology},
booktitle = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747/BIT105\_ICBO2016.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/XuGJTL16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/icbo/2016,
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747},
urn = {urn:nbn:de:0074-1747-1},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/2016.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/LingutlaPTCMJ14,
author = {Nikhil Lingutla and
Justin Preece and
Sinisa Todorovic and
Laurel Cooper and
Laura Moore and
Pankaj Jaiswal},
title = {{AISO:} Annotation of Image Segments with Ontologies},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {50},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-50},
doi = {10.1186/2041-1480-5-50},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/LingutlaPTCMJ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MonacoSNWDKAYTPPOJLBKSWWDHCKSJW14,
author = {Marcela K. Monaco and
Joshua C. Stein and
Sushma Naithani and
Sharon Wei and
Palitha Dharmawardhana and
Sunita Kumari and
Vindhya Amarasinghe and
Ken Youens{-}Clark and
James Thomason and
Justin Preece and
Shiran Pasternak and
Andrew Olson and
Yinping Jiao and
Zhenyuan Lu and
Daniel M. Bolser and
Arnaud Kerhornou and
Daniel M. Staines and
Brandon Walts and
Guanming Wu and
Peter D'Eustachio and
Robin Haw and
David Croft and
Paul J. Kersey and
Lincoln Stein and
Pankaj Jaiswal and
Doreen Ware},
title = {Gramene 2013: comparative plant genomics resources},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {1193--1199},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1110},
doi = {10.1093/NAR/GKT1110},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MonacoSNWDKAYTPPOJLBKSWWDHCKSJW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ic3k/ArnaudCSMNMSBJMM12,
author = {Elizabeth Arnaud and
Laurel Cooper and
Rosemary Shrestha and
Naama Menda and
Rex T. Nelson and
Luca Matteis and
Milko Skofic and
Ruth Bastow and
Pankaj Jaiswal and
Lukas A. Mueller and
Graham McLaren},
editor = {Joaquim Filipe and
Jan L. G. Dietz},
title = {Towards a Reference Plant Trait Ontology for Modeling Knowledge of
Plant Traits and Phenotypes},
booktitle = {{KEOD} 2012 - Proceedings of the International Conference on Knowledge
Engineering and Ontology Development, Barcelona, Spain, 4 - 7 October,
2012},
pages = {220--225},
publisher = {SciTePress},
year = {2012},
timestamp = {Mon, 03 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ic3k/ArnaudCSMNMSBJMM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/WallsCMMCSJ12,
author = {Ramona L. Walls and
Hong Cui and
James A. Macklin and
Chris Mungall and
Laurel Cooper and
Dennis W. Stevenson and
Pankaj Jaiswal},
editor = {Ronald Cornet and
Robert Stevens},
title = {Mapping of glossary terms from the Flora of North America to the Plant
Ontology enhances both resources},
booktitle = {Proceedings of the 3rd International Conference on Biomedical Ontology
{(ICBO} 2012), {KR-MED} Series, Graz, Austria, July 21-25, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {897},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-897/poster\_6.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/WallsCMMCSJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/WallsSEGSJ12,
author = {Ramona L. Walls and
Barry Smith and
Justin Elser and
Albert Goldfain and
Dennis W. Stevenson and
Pankaj Jaiswal},
editor = {Ronald Cornet and
Robert Stevens},
title = {A plant disease extension of the Infectious Disease Ontology},
booktitle = {Proceedings of the 3rd International Conference on Biomedical Ontology
{(ICBO} 2012), {KR-MED} Series, Graz, Austria, July 21-25, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {897},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-897/session1-paper01.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/WallsSEGSJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SmitaLKJPB11,
author = {Shuchi Smita and
Sangram Keshari Lenka and
Amit Katiyar and
Pankaj Jaiswal and
Justin Preece and
Kailash Chander Bansal},
title = {QlicRice: a web interface for abiotic stress responsive {QTL} and
loci interaction channels in rice},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/bar037},
doi = {10.1093/DATABASE/BAR037},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/SmitaLKJPB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Youens-ClarkBCCDDDJKKLMRSSTWW11,
author = {Ken Youens{-}Clark and
Edward S. Buckler and
Terry M. Casstevens and
Charles Chen and
Genevieve DeClerck and
Paul S. Derwent and
Palitha Dharmawardhana and
Pankaj Jaiswal and
Paul J. Kersey and
A. S. Karthikeyan and
Jerry Lu and
Susan McCouch and
Liya Ren and
William Spooner and
Joshua C. Stein and
Jim Thomason and
Sharon Wei and
Doreen Ware},
title = {Gramene database in 2010: updates and extensions},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {1085--1094},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1148},
doi = {10.1093/NAR/GKQ1148},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/Youens-ClarkBCCDDDJKKLMRSSTWW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/PreeceEJ11,
author = {Justin Preece and
Justin Elser and
Pankaj Jaiswal},
editor = {Adrian Paschke and
Albert Burger and
Paolo Romano and
M. Scott Marshall and
Andrea Splendiani},
title = {Planteome annotation wiki: a semantic application for the community
curation of plant genotypes and phenotypes},
booktitle = {Proceedings of the 4th International Workshop on Semantic Web Applications
and Tools for the Life Sciences, {SWAT4LS} 2011, London, United Kingdom,
December 07-09, 2011},
pages = {96--97},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2166896.2166921},
doi = {10.1145/2166896.2166921},
timestamp = {Thu, 28 Nov 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/PreeceEJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/NiPYYJTTRSWAWSM09,
author = {Junjian Ni and
Anuradha Pujar and
Ken Youens{-}Clark and
Immanuel Yap and
Pankaj Jaiswal and
Isaak Y. Tecle and
Chih{-}Wei Tung and
Liya Ren and
William Spooner and
Xuehong Wei and
Shuly Avraham and
Doreen Ware and
Lincoln Stein and
Susan McCouch},
title = {Gramene {QTL} database: development, content and applications},
journal = {Database J. Biol. Databases Curation},
volume = {2009},
year = {2009},
url = {https://doi.org/10.1093/database/bap005},
doi = {10.1093/DATABASE/BAP005},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/NiPYYJTTRSWAWSM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AvrahamTIJKMPRRSSSSVZW08,
author = {Shulamit Avraham and
Chih{-}Wei Tung and
Katica Ilic and
Pankaj Jaiswal and
Elizabeth A. Kellogg and
Susan McCouch and
Anuradha Pujar and
Leonore Reiser and
Seung Yon Rhee and
Martin M. Sachs and
Mary L. Schaeffer and
Lincoln Stein and
Peter F. Stevens and
Leszek Vincent and
Felipe Zapata and
Doreen Ware},
title = {The Plant Ontology Database: a community resource for plant structure
and developmental stages controlled vocabulary and annotations},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {449--454},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm908},
doi = {10.1093/NAR/GKM908},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AvrahamTIJKMPRRSSSSVZW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiangJHABCHMNPRRSTTTWYYWS08,
author = {Chengzhi Liang and
Pankaj Jaiswal and
Claire Hebbard and
Shuly Avraham and
Edward S. Buckler and
Terry M. Casstevens and
Bonnie L. Hurwitz and
Susan McCouch and
Junjian Ni and
Anuradha Pujar and
Dean Ravenscroft and
Liya Ren and
William Spooner and
Isaak Y. Tecle and
Jim Thomason and
Chih{-}Wei Tung and
Xuehong Wei and
Immanuel Yap and
Ken Youens{-}Clark and
Doreen Ware and
Lincoln Stein},
title = {Gramene: a growing plant comparative genomics resource},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {947--953},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm968},
doi = {10.1093/NAR/GKM968},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LiangJHABCHMNPRRSTTTWYYWS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/JaiswalNYWSYRLZRFCFHASCBSM06,
author = {Pankaj Jaiswal and
Junjian Ni and
Immanuel Yap and
Doreen Ware and
William Spooner and
Ken Youens{-}Clark and
Liya Ren and
Chengzhi Liang and
Wei Zhao and
Kiran Ratnapu and
Benjamin Faga and
Payan Canaran and
Molly Fogleman and
Claire Hebbard and
Shuly Avraham and
Steven Schmidt and
Terry M. Casstevens and
Edward S. Buckler and
Lincoln Stein and
Susan McCouch},
title = {Gramene: a bird's eye view of cereal genomes},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {717--723},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj154},
doi = {10.1093/NAR/GKJ154},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/JaiswalNYWSYRLZRFCFHASCBSM06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WareJNPCCTSZCMS03,
author = {Doreen Ware and
Pankaj Jaiswal and
Junjian Ni and
Xiaokang Pan and
Kuan Y. Chang and
Kenneth Clark and
Leonid Teytelman and
Steven Schmidt and
Wei Zhao and
Samuel Cartinhour and
Susan McCouch and
Lincoln Stein},
title = {Gramene: a resource for comparative grass genomics},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {103--105},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.103},
doi = {10.1093/NAR/30.1.103},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/WareJNPCCTSZCMS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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