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ORCIDBibTeX records: Xiuzhen Huang
@article{DBLP:journals/tcbb/CauseyLCDWQSMGH22,
author = {Jason L. Causey and
Keyu Li and
Xianghao Chen and
Wei Dong and
Karl Walker and
Jake A. Qualls and
Jonathan Stubblefield and
Jason H. Moore and
Yuanfang Guan and
Xiuzhen Huang},
title = {Spatial Pyramid Pooling With 3D Convolution Improves Lung Cancer Detection},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {2},
pages = {1165--1172},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2020.3027744},
doi = {10.1109/TCBB.2020.3027744},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CauseyLCDWQSMGH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HuangZG22,
author = {Xiuzhen Huang and
Yu Zhang and
Xuan Guo},
title = {Editorial},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1334--1335},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3131688},
doi = {10.1109/TCBB.2021.3131688},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HuangZG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/CauseySQFCWGH22,
author = {Jason L. Causey and
Jonathan Stubblefield and
Jake A. Qualls and
Jennifer Fowler and
Lingrui Cai and
Karl Walker and
Yuanfang Guan and
Xiuzhen Huang},
title = {An Ensemble of U-Net Models for Kidney Tumor Segmentation With {CT}
Images},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {19},
number = {3},
pages = {1387--1392},
year = {2022},
url = {https://doi.org/10.1109/TCBB.2021.3085608},
doi = {10.1109/TCBB.2021.3085608},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/CauseySQFCWGH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/PeckhamPOH22,
author = {Joan Peckham and
Andy D. Perkins and
Tayo Obafemi{-}Ajayi and
Xiuzhen Huang},
title = {{NBT} (no-boundary thinking): needed to attend to ethical implications
of data and {AI}},
booktitle = {{BCB} '22: 13th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, Northbrook, Illinois,
USA, August 7 - 10, 2022},
pages = {74:1--74:2},
publisher = {{ACM}},
year = {2022},
url = {https://doi.org/10.1145/3535508.3545595},
doi = {10.1145/3535508.3545595},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/PeckhamPOH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/PerkinsPOH22,
author = {Andy D. Perkins and
Joan Peckham and
Tayo Obafemi{-}Ajayi and
Xiuzhen Huang},
title = {Team building without boundaries},
booktitle = {{BCB} '22: 13th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, Northbrook, Illinois,
USA, August 7 - 10, 2022},
pages = {75:1--75:3},
publisher = {{ACM}},
year = {2022},
url = {https://doi.org/10.1145/3535508.3545596},
doi = {10.1145/3535508.3545596},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/PerkinsPOH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/globecom/LiuZAH0D22,
author = {Jinwei Liu and
Xiaonan Zhang and
Richard A. Al{\'{o}} and
Xiuzhen Huang and
Long Cheng and
Feng Deng},
title = {CrossCas: {A} Novel Cross-Platform Approach for Predicting Cascades
in Online Social Networks with Hidden Markov Model},
booktitle = {{IEEE} Global Communications Conference, {GLOBECOM} 2022, Rio de Janeiro,
Brazil, December 4-8, 2022},
pages = {6415--6420},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/GLOBECOM48099.2022.10001560},
doi = {10.1109/GLOBECOM48099.2022.10001560},
timestamp = {Wed, 06 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/globecom/LiuZAH0D22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcbdd/FowlerSCQDJWGH21,
author = {Jennifer Fowler and
Jonathan Stubblefield and
Jason L. Causey and
Jake A. Qualls and
Wei Dong and
Hongmei Jiang and
Karl Walker and
Yuanfang Guan and
Xiuzhen Huang},
title = {Identify differentially expressed genes with large background samples},
journal = {Int. J. Comput. Biol. Drug Des.},
volume = {14},
number = {6},
pages = {411--428},
year = {2021},
url = {https://doi.org/10.1504/IJCBDD.2021.121615},
doi = {10.1504/IJCBDD.2021.121615},
timestamp = {Tue, 14 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijcbdd/FowlerSCQDJWGH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bcb/2021,
editor = {Hongmei Jiang and
Xiuzhen Huang and
Jiajie Zhang},
title = {{BCB} '21: 12th {ACM} International Conference on Bioinformatics,
Computational Biology and Health Informatics, Gainesville, Florida,
USA, August 1-4, 2021},
publisher = {{ACM}},
year = {2021},
url = {https://doi.org/10.1145/3459930},
doi = {10.1145/3459930},
isbn = {978-1-4503-8450-6},
timestamp = {Wed, 04 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/2021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/GuanWLZCSNH20,
author = {Yuanfang Guan and
Xueqing Wang and
Hongyang Li and
Zhenning Zhang and
Xianghao Chen and
Omer Siddiqui and
Sara Nehring and
Xiuzhen Huang},
title = {Detecting Asymmetric Patterns and Localizing Cancers on Mammograms},
journal = {Patterns},
volume = {1},
number = {7},
pages = {100106},
year = {2020},
url = {https://doi.org/10.1016/j.patter.2020.100106},
doi = {10.1016/J.PATTER.2020.100106},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/patterns/GuanWLZCSNH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1906-00240,
author = {Jason L. Causey and
Yuanfang Guan and
Wei Dong and
Karl Walker and
Jake A. Qualls and
Fred W. Prior and
Xiuzhen Huang},
title = {Lung cancer screening with low-dose {CT} scans using a deep learning
approach},
journal = {CoRR},
volume = {abs/1906.00240},
year = {2019},
url = {http://arxiv.org/abs/1906.00240},
eprinttype = {arXiv},
eprint = {1906.00240},
timestamp = {Tue, 14 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1906-00240.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OrzechowskiSHM18,
author = {Patryk Orzechowski and
Moshe Sipper and
Xiuzhen Huang and
Jason H. Moore},
title = {{EBIC:} an evolutionary-based parallel biclustering algorithm for
pattern discovery},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3719--3726},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty401},
doi = {10.1093/BIOINFORMATICS/BTY401},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/OrzechowskiSHM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OrzechowskiPHM18,
author = {Patryk Orzechowski and
Artur Panszczyk and
Xiuzhen Huang and
Jason H. Moore},
title = {runibic: a Bioconductor package for parallel row-based biclustering
of gene expression data},
journal = {Bioinform.},
volume = {34},
number = {24},
pages = {4302--4304},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty512},
doi = {10.1093/BIOINFORMATICS/BTY512},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OrzechowskiPHM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gecco/OrzechowskiSHM18,
author = {Patryk Orzechowski and
Moshe Sipper and
Xiuzhen Huang and
Jason H. Moore},
editor = {Hern{\'{a}}n E. Aguirre and
Keiki Takadama},
title = {{EBIC:} a next-generation evolutionary-based parallel biclustering
method},
booktitle = {Proceedings of the Genetic and Evolutionary Computation Conference
Companion, {GECCO} 2018, Kyoto, Japan, July 15-19, 2018},
pages = {59--60},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3205651.3208779},
doi = {10.1145/3205651.3208779},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gecco/OrzechowskiSHM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1801-03039,
author = {Patryk Orzechowski and
Moshe Sipper and
Xiuzhen Huang and
Jason H. Moore},
title = {{EBIC:} an artificial intelligence-based parallel biclustering algorithm
for pattern discovery},
journal = {CoRR},
volume = {abs/1801.03039},
year = {2018},
url = {http://arxiv.org/abs/1801.03039},
eprinttype = {arXiv},
eprint = {1801.03039},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1801-03039.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1802-01756,
author = {Jason L. Causey and
Junyu Zhang and
Shiqian Ma and
Bo Jiang and
Jake A. Qualls and
David G. Politte and
Fred W. Prior and
Shuzhong Zhang and
Xiuzhen Huang},
title = {Highly accurate model for prediction of lung nodule malignancy with
{CT} scans},
journal = {CoRR},
volume = {abs/1802.01756},
year = {2018},
url = {http://arxiv.org/abs/1802.01756},
eprinttype = {arXiv},
eprint = {1802.01756},
timestamp = {Thu, 13 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1802-01756.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jimaging/LiuAHL17,
author = {Suxing Liu and
Lucia M. Acosta{-}Gamboa and
Xiuzhen Huang and
Argelia Lorence},
title = {Novel Low Cost 3D Surface Model Reconstruction System for Plant Phenotyping},
journal = {J. Imaging},
volume = {3},
number = {3},
pages = {39},
year = {2017},
url = {https://doi.org/10.3390/jimaging3030039},
doi = {10.3390/JIMAGING3030039},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jimaging/LiuAHL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/MooreJGHPWWZH17,
author = {Jason H. Moore and
Steven F. Jennings and
Casey S. Greene and
Lawrence E. Hunter and
Andy D. Perkins and
ClarLynda R. Williams{-}DeVane and
Donald C. Wunsch and
Zhongming Zhao and
Xiuzhen Huang},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {No-Boundary Thinking in Bioinformatics},
booktitle = {Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2017},
pages = {646--648},
year = {2017},
url = {http://psb.stanford.edu/psb-online/proceedings/psb17/wkshop-noboundary.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/MooreJGHPWWZH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LiuLCYLMCH16,
author = {Juntao Liu and
Guojun Li and
Zheng Chang and
Ting Yu and
Bingqiang Liu and
Rick McMullen and
Pengyin Chen and
Xiuzhen Huang},
title = {BinPacker: Packing-Based \emph{De Novo} Transcriptome Assembly from
RNA-seq Data},
journal = {PLoS Comput. Biol.},
volume = {12},
number = {2},
year = {2016},
url = {https://doi.org/10.1371/journal.pcbi.1004772},
doi = {10.1371/JOURNAL.PCBI.1004772},
timestamp = {Tue, 12 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/LiuLCYLMCH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/cu/p/MaJHZ16,
author = {Shiqian Ma and
Bo Jiang and
Xiuzhen Huang and
Shuzhong Zhang},
editor = {Shuguang Cui and
Alfred O. Hero III and
Zhi{-}Quan Luo and
Jos{\'{e}} M. F. Moura},
title = {Tensor models: solution methods and applications},
booktitle = {Big Data over Networks},
pages = {3--36},
publisher = {Cambridge University Press},
year = {2016},
url = {https://doi.org/10.1017/CBO9781316162750.002},
doi = {10.1017/CBO9781316162750.002},
timestamp = {Wed, 20 Mar 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/books/cu/p/MaJHZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HuangJBBCCCGHJL15,
author = {Xiuzhen Huang and
Steven F. Jennings and
Barry Bruce and
Alison Buchan and
Liming Cai and
Pengyin Chen and
Carole L. Cramer and
Weihua Guan and
Uwe Hilgert and
Hongmei Jiang and
Zenglu Li and
Gail McClure and
Donald F. McMullen and
Bindu Nanduri and
Andy D. Perkins and
Bhanu Rekepalli and
Saeed Salem and
Jennifer Specker and
Karl Walker and
Donald C. Wunsch and
Donghai Xiong and
Shuzhong Zhang and
Yu Zhang and
Zhongming Zhao and
Jason H. Moore},
title = {Big data - a 21st century science Maginot Line? No-boundary thinking:
shifting from the big data paradigm},
journal = {BioData Min.},
volume = {8},
pages = {7},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0037-5},
doi = {10.1186/S13040-015-0037-5},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HuangJBBCCCGHJL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lata/DingSXHMC14,
author = {Liang Ding and
Abdul Samad and
Xingran Xue and
Xiuzhen Huang and
Russell L. Malmberg and
Liming Cai},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Jos{\'{e}} Luis Sierra{-}Rodr{\'{\i}}guez and
Bianca Truthe},
title = {Stochastic k-Tree Grammar and Its Application in Biomolecular Structure
Modeling},
booktitle = {Language and Automata Theory and Applications - 8th International
Conference, {LATA} 2014, Madrid, Spain, March 10-14, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8370},
pages = {308--322},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-04921-2\_25},
doi = {10.1007/978-3-319-04921-2\_25},
timestamp = {Fri, 10 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/lata/DingSXHMC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/HuangBBCCJJLMMMNPPPRSSWXZZ13,
author = {Xiuzhen Huang and
Barry Bruce and
Alison Buchan and
Clare Bates Congdon and
Carole L. Cramer and
Steven F. Jennings and
Hongmei Jiang and
Zenglu Li and
Gail McClure and
Rick McMullen and
Jason H. Moore and
Bindu Nanduri and
Joan Peckham and
Andy D. Perkins and
Shawn W. Polson and
Bhanu Rekepalli and
Saeed Salem and
Jennifer Specker and
Donald C. Wunsch and
Donghai Xiong and
Shuzhong Zhang and
Zhongming Zhao},
title = {No-boundary thinking in bioinformatics research},
journal = {BioData Min.},
volume = {6},
pages = {19},
year = {2013},
url = {https://doi.org/10.1186/1756-0381-6-19},
doi = {10.1186/1756-0381-6-19},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/HuangBBCCJJLMMMNPPPRSSWXZZ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/DingSXHC13,
author = {Liang Ding and
Abdul Samad and
Xingran Xue and
Xiuzhen Huang and
Liming Cai},
title = {Polynomial kernels collapse the W-hierarchy},
journal = {CoRR},
volume = {abs/1308.3613},
year = {2013},
url = {http://arxiv.org/abs/1308.3613},
eprinttype = {arXiv},
eprint = {1308.3613},
timestamp = {Fri, 10 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/DingSXHC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biostec/AshbyWCH12,
author = {Cody Ashby and
Kun Wang and
Carole L. Cramer and
Xiuzhen Huang},
editor = {Jan Schier and
Carlos Manuel B. A. Correia and
Ana L. N. Fred and
Hugo Gamboa},
title = {Study of Protein Structure Alignment Problem in Parameterized Computation},
booktitle = {{BIOINFORMATICS} 2012 - Proceedings of the International Conference
on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve,
Portugal, 1 - 4 February, 2012},
pages = {174--181},
publisher = {SciTePress},
year = {2012},
timestamp = {Tue, 29 May 2012 10:31:06 +0200},
biburl = {https://dblp.org/rec/conf/biostec/AshbyWCH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/prib/ZhangWACH12,
author = {Shuzhong Zhang and
Kun Wang and
Cody Ashby and
Bilian Chen and
Xiuzhen Huang},
editor = {Tetsuo Shibuya and
Hisashi Kashima and
Jun Sese and
Shandar Ahmad},
title = {A Unified Adaptive Co-identification Framework for High-D Expression
Data},
booktitle = {Pattern Recognition in Bioinformatics - 7th {IAPR} International Conference,
{PRIB} 2012, Tokyo, Japan, November 8-10, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7632},
pages = {59--70},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-34123-6\_6},
doi = {10.1007/978-3-642-34123-6\_6},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/prib/ZhangWACH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/JohnsonWCH11,
author = {Daniel Johnson and
Kun Wang and
Carole L. Cramer and
Xiuzhen Huang},
editor = {Robert Grossman and
Andrey Rzhetsky and
Sun Kim and
Wei Wang},
title = {Graph-based approach for gene markers and applications in next-generation
sequencing data analysis},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
2011},
pages = {511--513},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2147805.2147886},
doi = {10.1145/2147805.2147886},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/JohnsonWCH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/prib/ZhangWCH11,
author = {Shuzhong Zhang and
Kun Wang and
Bilian Chen and
Xiuzhen Huang},
editor = {Marco Loog and
Lodewyk F. A. Wessels and
Marcel J. T. Reinders and
Dick de Ridder},
title = {A New Framework for Co-clustering of Gene Expression Data},
booktitle = {Pattern Recognition in Bioinformatics - 6th {IAPR} International Conference,
{PRIB} 2011, Delft, The Netherlands, November 2-4, 2011. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7036},
pages = {1--12},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-24855-9\_1},
doi = {10.1007/978-3-642-24855-9\_1},
timestamp = {Tue, 14 May 2019 10:00:45 +0200},
biburl = {https://dblp.org/rec/conf/prib/ZhangWCH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/algorithmica/CaiH10,
author = {Liming Cai and
Xiuzhen Huang},
title = {Fixed-Parameter Approximation: Conceptual Framework and Approximability
Results},
journal = {Algorithmica},
volume = {57},
number = {2},
pages = {398--412},
year = {2010},
url = {https://doi.org/10.1007/s00453-008-9223-x},
doi = {10.1007/S00453-008-9223-X},
timestamp = {Wed, 17 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/algorithmica/CaiH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/JohnsonTAHH10,
author = {Daniel Johnson and
Keat Teoh and
Cody Ashby and
Elizabeth Hood and
Xiuzhen Huang},
title = {Analyzing genetic factors involved in recombinant protein expression
enhancement},
booktitle = {2010 {IEEE} International Conference on Bioinformatics and Biomedicine
Workshops, {BIBMW} 2010, Hong Kong, December 18, 2010},
pages = {240--245},
publisher = {{IEEE}},
year = {2010},
url = {https://doi.org/10.1109/BIBMW.2010.5703806},
doi = {10.1109/BIBMW.2010.5703806},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/JohnsonTAHH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WilkinH08,
author = {Gregory A. Wilkin and
Xiuzhen Huang},
title = {A practical comparison of two K-Means clustering algorithms},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-6}},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-S6-S19},
doi = {10.1186/1471-2105-9-S6-S19},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WilkinH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cj/CaiHLRS08,
author = {Liming Cai and
Xiuzhen Huang and
Chunmei Liu and
Frances A. Rosamond and
Yinglei Song},
title = {Parameterized Complexity and Biopolymer Sequence Comparison},
journal = {Comput. J.},
volume = {51},
number = {3},
pages = {270--291},
year = {2008},
url = {https://doi.org/10.1093/comjnl/bxm035},
doi = {10.1093/COMJNL/BXM035},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cj/CaiHLRS08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/imsccs/Huang08,
author = {Xiuzhen Huang},
title = {Addressing Bio-sequence and Bio-structure Problems},
booktitle = {International Multisymposiums on Computer and Computational Sciences,
{IMSCCS} 2008, Shanghai, China, October 18-20, 2008},
pages = {9--16},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/IMSCCS.2008.26},
doi = {10.1109/IMSCCS.2008.26},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/imsccs/Huang08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/imsccs/AshbyHJK08,
author = {Cody Ashby and
Xiuzhen Huang and
Jeff Jenness and
Joseph Kerby},
title = {A Relational Approach for Pathway Analysis},
booktitle = {International Multisymposiums on Computer and Computational Sciences,
{IMSCCS} 2008, Shanghai, China, October 18-20, 2008},
pages = {31--36},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/IMSCCS.2008.27},
doi = {10.1109/IMSCCS.2008.27},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/imsccs/AshbyHJK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/ChenHKX07,
author = {Jianer Chen and
Xiuzhen Huang and
Iyad A. Kanj and
Ge Xia},
title = {Polynomial time approximation schemes and parameterized complexity},
journal = {Discret. Appl. Math.},
volume = {155},
number = {2},
pages = {180--193},
year = {2007},
url = {https://doi.org/10.1016/j.dam.2006.04.040},
doi = {10.1016/J.DAM.2006.04.040},
timestamp = {Thu, 11 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/ChenHKX07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/imsccs/HuangL07,
author = {Xiuzhen Huang and
Jing Lai},
title = {Parameterized Graph Problems in Computational Biology},
booktitle = {Proceeding of the Second International Multi-Symposium of Computer
and Computational Sciences {(IMSCCS} 2007), August 13-15, 2007, The
University of Iowa, Iowa City, Iowa, {USA}},
pages = {129--132},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/IMSCCS.2007.50},
doi = {10.1109/IMSCCS.2007.50},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/imsccs/HuangL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/imsccs/WilkinH07,
author = {Gregory A. Wilkin and
Xiuzhen Huang},
title = {K-Means Clustering Algorithms: Implementation and Comparison},
booktitle = {Proceeding of the Second International Multi-Symposium of Computer
and Computational Sciences {(IMSCCS} 2007), August 13-15, 2007, The
University of Iowa, Iowa City, Iowa, {USA}},
pages = {133--136},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/IMSCCS.2007.51},
doi = {10.1109/IMSCCS.2007.51},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/imsccs/WilkinH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HuangLJ06,
author = {Xiuzhen Huang and
Jing Lai and
Steven F. Jennings},
title = {Maximum common subgraph: some upper bound and lower bound results},
journal = {{BMC} Bioinform.},
volume = {7},
number = {{S-4}},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-S4-S6},
doi = {10.1186/1471-2105-7-S4-S6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HuangLJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jco/ChenHKX06,
author = {Jianer Chen and
Xiuzhen Huang and
Iyad A. Kanj and
Ge Xia},
title = {On the computational hardness based on linear FPT-reductions},
journal = {J. Comb. Optim.},
volume = {11},
number = {2},
pages = {231--247},
year = {2006},
url = {https://doi.org/10.1007/s10878-006-7137-6},
doi = {10.1007/S10878-006-7137-6},
timestamp = {Thu, 18 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jco/ChenHKX06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcss/ChenHKX06,
author = {Jianer Chen and
Xiuzhen Huang and
Iyad A. Kanj and
Ge Xia},
title = {Strong computational lower bounds via parameterized complexity},
journal = {J. Comput. Syst. Sci.},
volume = {72},
number = {8},
pages = {1346--1367},
year = {2006},
url = {https://doi.org/10.1016/j.jcss.2006.04.007},
doi = {10.1016/J.JCSS.2006.04.007},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcss/ChenHKX06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/SongLHMXC06,
author = {Yinglei Song and
Chunmei Liu and
Xiuzhen Huang and
Russell L. Malmberg and
Ying Xu and
Liming Cai},
title = {Efficient Parameterized Algorithms for Biopolymer Structure-Sequence
Alignment},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {3},
number = {4},
pages = {423--432},
year = {2006},
url = {https://doi.org/10.1109/TCBB.2006.52},
doi = {10.1109/TCBB.2006.52},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/SongLHMXC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/LinJH06,
author = {Yuan Lin and
Jeff Jenness and
Xiuzhen Huang},
editor = {Hamid R. Arabnia and
Homayoun Valafar},
title = {Parameterized Computation of {LCS} for Two Sequences},
booktitle = {Proceedings of the 2006 International Conference on Bioinformatics
{\&} Computational Biology, BIOCOMP'06, Las Vegas, Nevada, USA,
June 26-29, 2006},
pages = {31--40},
publisher = {{CSREA} Press},
year = {2006},
timestamp = {Mon, 27 Nov 2006 11:07:54 +0100},
biburl = {https://dblp.org/rec/conf/biocomp/LinJH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/Huang06,
author = {Xiuzhen Huang},
editor = {Danny Z. Chen and
D. T. Lee},
title = {Lower Bounds and Parameterized Approach for Longest Common Subsequence},
booktitle = {Computing and Combinatorics, 12th Annual International Conference,
{COCOON} 2006, Taipei, Taiwan, August 15-18, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4112},
pages = {136--145},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11809678\_16},
doi = {10.1007/11809678\_16},
timestamp = {Tue, 14 May 2019 10:00:35 +0200},
biburl = {https://dblp.org/rec/conf/cocoon/Huang06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fcs/Huang06,
author = {Xiuzhen Huang},
editor = {Hamid R. Arabnia and
Mark Murgin},
title = {Negative-Weight Cycle Algorithms},
booktitle = {Proceedings of the 2006 International Conference on Foundations of
Computer Science, Las Vegas, Nevada, USA, June 26-29, 2006},
pages = {109--115},
publisher = {{CSREA} Press},
year = {2006},
timestamp = {Tue, 02 Jan 2007 10:32:03 +0100},
biburl = {https://dblp.org/rec/conf/fcs/Huang06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ifipTCS/HuangC06,
author = {Xiuzhen Huang and
Jianer Chen},
editor = {Gonzalo Navarro and
Leopoldo E. Bertossi and
Yoshiharu Kohayakawa},
title = {On {PTAS} for Planar Graph Problems},
booktitle = {Fourth {IFIP} International Conference on Theoretical Computer Science
{(TCS} 2006), {IFIP} 19th World Computer Congress, {TC-1} Foundations
of Computer Science, August 23-24, 2006, Santiago, Chile},
series = {{IFIP}},
volume = {209},
pages = {299--313},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-0-387-34735-6\_24},
doi = {10.1007/978-0-387-34735-6\_24},
timestamp = {Wed, 28 Feb 2024 00:16:41 +0100},
biburl = {https://dblp.org/rec/conf/ifipTCS/HuangC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/imsccs/HuangL06,
author = {Xiuzhen Huang and
Jing Lai},
editor = {Jun Ni and
Jack J. Dongarra},
title = {Maximum Common Subgraph: Upper Bound and Lower Bound Results},
booktitle = {Interdisciplinary and Multidisciplinary Research in Computer Science,
{IEEE} {CS} Proceeding of the First International Multi-Symposium
of Computer and Computational Sciences (IMSCCS{\(\vert\)}06), June
20-24, 2006, Zhejiang University, Hangzhou, China, Vol. 1},
pages = {40--47},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/IMSCCS.2006.84},
doi = {10.1109/IMSCCS.2006.84},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/imsccs/HuangL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwpec/CaiH06,
author = {Liming Cai and
Xiuzhen Huang},
editor = {Hans L. Bodlaender and
Michael A. Langston},
title = {Fixed-Parameter Approximation: Conceptual Framework and Approximability
Results},
booktitle = {Parameterized and Exact Computation, Second International Workshop,
{IWPEC} 2006, Z{\"{u}}rich, Switzerland, September 13-15, 2006,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4169},
pages = {96--108},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11847250\_9},
doi = {10.1007/11847250\_9},
timestamp = {Tue, 14 May 2019 10:00:45 +0200},
biburl = {https://dblp.org/rec/conf/iwpec/CaiH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/iandc/ChenCFHJKX05,
author = {Jianer Chen and
Benny Chor and
Mike Fellows and
Xiuzhen Huang and
David W. Juedes and
Iyad A. Kanj and
Ge Xia},
title = {Tight lower bounds for certain parameterized NP-hard problems},
journal = {Inf. Comput.},
volume = {201},
number = {2},
pages = {216--231},
year = {2005},
url = {https://doi.org/10.1016/j.ic.2005.05.001},
doi = {10.1016/J.IC.2005.05.001},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/iandc/ChenCFHJKX05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cocoon/ChenHKX05,
author = {Jianer Chen and
Xiuzhen Huang and
Iyad A. Kanj and
Ge Xia},
editor = {Lusheng Wang},
title = {\emph{W}-Hardness Under Linear FPT-Reductions: Structural Properties
and Further Applications},
booktitle = {Computing and Combinatorics, 11th Annual International Conference,
{COCOON} 2005, Kunming, China, August 16-29, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3595},
pages = {975--984},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11533719\_98},
doi = {10.1007/11533719\_98},
timestamp = {Tue, 14 May 2019 10:00:35 +0200},
biburl = {https://dblp.org/rec/conf/cocoon/ChenHKX05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wabi/SongLHMXC05,
author = {Yinglei Song and
Chunmei Liu and
Xiuzhen Huang and
Russell L. Malmberg and
Ying Xu and
Liming Cai},
editor = {Rita Casadio and
Gene Myers},
title = {Efficient Parameterized Algorithm for Biopolymer Structure-Sequence
Alignment},
booktitle = {Algorithms in Bioinformatics, 5th International Workshop, {WABI} 2005,
Mallorca, Spain, October 3-6, 2005, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3692},
pages = {376--388},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11557067\_31},
doi = {10.1007/11557067\_31},
timestamp = {Tue, 14 May 2019 10:00:40 +0200},
biburl = {https://dblp.org/rec/conf/wabi/SongLHMXC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/coco/ChenCFHJKX04,
author = {Jianer Chen and
Benny Chor and
Mike Fellows and
Xiuzhen Huang and
David W. Juedes and
Iyad A. Kanj and
Ge Xia},
title = {Tight Lower Bounds for Certain Parameterized NP-Hard Problems},
booktitle = {19th Annual {IEEE} Conference on Computational Complexity {(CCC} 2004),
21-24 June 2004, Amherst, MA, {USA}},
pages = {150--160},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/CCC.2004.1313826},
doi = {10.1109/CCC.2004.1313826},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/coco/ChenCFHJKX04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mfcs/ChenHKX04,
author = {Jianer Chen and
Xiuzhen Huang and
Iyad A. Kanj and
Ge Xia},
editor = {Jir{\'{\i}} Fiala and
V{\'{a}}clav Koubek and
Jan Kratochv{\'{\i}}l},
title = {Polynomial Time Approximation Schemes and Parameterized Complexity},
booktitle = {Mathematical Foundations of Computer Science 2004, 29th International
Symposium, {MFCS} 2004, Prague, Czech Republic, August 22-27, 2004,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3153},
pages = {500--512},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-28629-5\_38},
doi = {10.1007/978-3-540-28629-5\_38},
timestamp = {Tue, 14 May 2019 10:00:37 +0200},
biburl = {https://dblp.org/rec/conf/mfcs/ChenHKX04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/stoc/ChenHKX04,
author = {Jianer Chen and
Xiuzhen Huang and
Iyad A. Kanj and
Ge Xia},
editor = {L{\'{a}}szl{\'{o}} Babai},
title = {Linear {FPT} reductions and computational lower bounds},
booktitle = {Proceedings of the 36th Annual {ACM} Symposium on Theory of Computing,
Chicago, IL, USA, June 13-16, 2004},
pages = {212--221},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/1007352.1007391},
doi = {10.1145/1007352.1007391},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/stoc/ChenHKX04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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