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ORCIDBibTeX records: Eric P. Hoffman
@article{DBLP:journals/bioinformatics/TianZHCZSXHW15,
author = {Ye Tian and
Bai Zhang and
Eric P. Hoffman and
Robert Clarke and
Zhen Zhang and
Ie{-}Ming Shih and
Jianhua Xuan and
David M. Herrington and
Yue Joseph Wang},
title = {{KDDN:} an open-source Cytoscape app for constructing differential
dependency networks with significant rewiring},
journal = {Bioinform.},
volume = {31},
number = {2},
pages = {287--289},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu632},
doi = {10.1093/BIOINFORMATICS/BTU632},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TianZHCZSXHW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/TianZHCZSXHW14,
author = {Ye Tian and
Bai Zhang and
Eric P. Hoffman and
Robert Clarke and
Zhen Zhang and
Ie{-}Ming Shih and
Jianhua Xuan and
David M. Herrington and
Yue Joseph Wang},
title = {Knowledge-fused differential dependency network models for detecting
significant rewiring in biological networks},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {87},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0087-1},
doi = {10.1186/S12918-014-0087-1},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcsb/TianZHCZSXHW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/globalsip/WangBWMHY14,
author = {Yinxue Wang and
Luca Bello and
Yue Wang and
Craig M. McDonald and
Eric P. Hoffman and
Guoqiang Yu},
title = {Predicting age at loss of ambulation in Duchenne muscular dystrophy
with deep phenotypic measures},
booktitle = {2014 {IEEE} Global Conference on Signal and Information Processing,
GlobalSIP 2014, Atlanta, GA, USA, December 3-5, 2014},
pages = {1344--1347},
publisher = {{IEEE}},
year = {2014},
url = {https://doi.org/10.1109/GlobalSIP.2014.7032343},
doi = {10.1109/GLOBALSIP.2014.7032343},
timestamp = {Tue, 21 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/globalsip/WangBWMHY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jmlr/WangMCMCHXW13,
author = {Niya Wang and
Fan Meng and
Li Chen and
Subha Madhavan and
Robert Clarke and
Eric P. Hoffman and
Jianhua Xuan and
Yue Joseph Wang},
title = {The {CAM} software for nonnegative blind source separation in R-Java},
journal = {J. Mach. Learn. Res.},
volume = {14},
number = {1},
pages = {2899--2903},
year = {2013},
url = {https://dl.acm.org/doi/10.5555/2567709.2567753},
doi = {10.5555/2567709.2567753},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/WangMCMCHXW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijon/WangHXWH12,
author = {Chen Wang and
Sook S. Ha and
Jianhua Xuan and
Yue Joseph Wang and
Eric P. Hoffman},
title = {Computational analysis of muscular dystrophy sub-types using a novel
integrative scheme},
journal = {Neurocomputing},
volume = {92},
pages = {9--17},
year = {2012},
url = {https://doi.org/10.1016/j.neucom.2011.08.037},
doi = {10.1016/J.NEUCOM.2011.08.037},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijon/WangHXWH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/YuLHSCHMXW11,
author = {Guoqiang Yu and
Huai Li and
Sook S. Ha and
Ie{-}Ming Shih and
Robert Clarke and
Eric P. Hoffman and
Subha Madhavan and
Jianhua Xuan and
Yue Joseph Wang},
title = {{PUGSVM:} a caBIG\({}^{\mbox{TM}}\) analytical tool for multiclass
gene selection and predictive classification},
journal = {Bioinform.},
volume = {27},
number = {5},
pages = {736--738},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btq721},
doi = {10.1093/BIOINFORMATICS/BTQ721},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/YuLHSCHMXW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangTJLSMCHXHW11,
author = {Bai Zhang and
Ye Tian and
Lu Jin and
Huai Li and
Ie{-}Ming Shih and
Subha Madhavan and
Robert Clarke and
Eric P. Hoffman and
Jianhua Xuan and
Leena Hilakivi{-}Clarke and
Yue Joseph Wang},
title = {{DDN:} a caBIG\({}^{\mbox{{\textregistered}}}\) analytical tool for
differential network analysis},
journal = {Bioinform.},
volume = {27},
number = {7},
pages = {1036--1038},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr052},
doi = {10.1093/BIOINFORMATICS/BTR052},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangTJLSMCHXHW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GongXCRLHCW11,
author = {Ting Gong and
Jianhua Xuan and
Li Chen and
Rebecca B. Riggins and
Huai Li and
Eric P. Hoffman and
Robert Clarke and
Yue Joseph Wang},
title = {Motif-guided sparse decomposition of gene expression data for regulatory
module identification},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {82},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-82},
doi = {10.1186/1471-2105-12-82},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/GongXCRLHCW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenXRWHC10,
author = {Li Chen and
Jianhua Xuan and
Rebecca B. Riggins and
Yue Joseph Wang and
Eric P. Hoffman and
Robert Clarke},
title = {Multilevel support vector regression analysis to identify condition-specific
regulatory networks},
journal = {Bioinform.},
volume = {26},
number = {11},
pages = {1416--1422},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq144},
doi = {10.1093/BIOINFORMATICS/BTQ144},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenXRWHC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangXLWZHC10,
author = {Chen Wang and
Jianhua Xuan and
Huai Li and
Yue Joseph Wang and
Ming Zhan and
Eric P. Hoffman and
Robert Clarke},
title = {Knowledge-guided gene ranking by coordinative component analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {162},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-162},
doi = {10.1186/1471-2105-11-162},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangXLWZHC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jmlr/YuFMXHCDSW10,
author = {Guoqiang Yu and
Yuanjian Feng and
David J. Miller and
Jianhua Xuan and
Eric P. Hoffman and
Robert Clarke and
Ben Davidson and
Ie{-}Ming Shih and
Yue Joseph Wang},
title = {Matched Gene Selection and Committee Classifier for Molecular Classification
of Heterogeneous Diseases},
journal = {J. Mach. Learn. Res.},
volume = {11},
pages = {2141--2167},
year = {2010},
url = {https://dl.acm.org/doi/10.5555/1756006.1859924},
doi = {10.5555/1756006.1859924},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/YuFMXHCDSW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/WangHWXH10,
author = {Chen Wang and
Sook S. Ha and
Yue Joseph Wang and
Jianhua Xuan and
Eric P. Hoffman},
editor = {Sorin Draghici and
Taghi M. Khoshgoftaar and
Vasile Palade and
Witold Pedrycz and
M. Arif Wani and
Xingquan Zhu},
title = {Computational Analysis of Muscular Dystrophy Sub-types Using a Novel
Integrative Scheme},
booktitle = {The Ninth International Conference on Machine Learning and Applications,
{ICMLA} 2010, Washington, DC, USA, 12-14 December 2010},
pages = {287--292},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/ICMLA.2010.49},
doi = {10.1109/ICMLA.2010.49},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmla/WangHWXH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangLRZXZHCW09,
author = {Bai Zhang and
Huai Li and
Rebecca B. Riggins and
Ming Zhan and
Jianhua Xuan and
Zhen Zhang and
Eric P. Hoffman and
Robert Clarke and
Yue Joseph Wang},
title = {Differential dependency network analysis to identify condition-specific
topological changes in biological networks},
journal = {Bioinform.},
volume = {25},
number = {4},
pages = {526--532},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn660},
doi = {10.1093/BIOINFORMATICS/BTN660},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangLRZXZHCW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcbdd/ChenXWHRC09,
author = {Li Chen and
Jianhua Xuan and
Yue Joseph Wang and
Eric P. Hoffman and
Rebecca B. Riggins and
Robert Clarke},
title = {Identification of condition-specific regulatory modules through multi-level
motif and mRNA expression analysis},
journal = {Int. J. Comput. Biol. Drug Des.},
volume = {2},
number = {1},
pages = {1--20},
year = {2009},
url = {https://doi.org/10.1504/IJCBDD.2009.027582},
doi = {10.1504/IJCBDD.2009.027582},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijcbdd/ChenXWHRC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijdmb/ChenXWWSWZCH09,
author = {Li Chen and
Jianhua Xuan and
Chen Wang and
Yue Joseph Wang and
Ie{-}Ming Shih and
Tian{-}Li Wang and
Zhen Zhang and
Robert Clarke and
Eric P. Hoffman},
title = {Biomarker identification by knowledge-driven multilevel {ICA} and
motif analysis},
journal = {Int. J. Data Min. Bioinform.},
volume = {3},
number = {4},
pages = {365--381},
year = {2009},
url = {https://doi.org/10.1504/IJDMB.2009.029201},
doi = {10.1504/IJDMB.2009.029201},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijdmb/ChenXWWSWZCH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tvcg/KimLKHS09,
author = {Bo Hyoung Kim and
Bongshin Lee and
Susan Knoblach and
Eric P. Hoffman and
Jinwook Seo},
title = {GeneShelf: {A} Web-based Visual Interface for Large Gene Expression
Time-Series Data Repositories},
journal = {{IEEE} Trans. Vis. Comput. Graph.},
volume = {15},
number = {6},
pages = {905--912},
year = {2009},
url = {https://doi.org/10.1109/TVCG.2009.146},
doi = {10.1109/TVCG.2009.146},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tvcg/KimLKHS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ChenXWSWZHC08,
author = {Li Chen and
Jianhua Xuan and
Chen Wang and
Ie{-}Ming Shih and
Yue Joseph Wang and
Zhen Zhang and
Eric P. Hoffman and
Robert Clarke},
title = {Knowledge-guided multi-scale independent component analysis for biomarker
identification},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-416},
doi = {10.1186/1471-2105-9-416},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ChenXWSWZHC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangXCZWCH08,
author = {Chen Wang and
Jianhua Xuan and
Li Chen and
Po Zhao and
Yue Joseph Wang and
Robert Clarke and
Eric P. Hoffman},
title = {Motif-directed network component analysis for regulatory network inference},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-1}},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-S1-S21},
doi = {10.1186/1471-2105-9-S1-S21},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WangXCZWCH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhuLMWXCHW08,
author = {Yitan Zhu and
Huai Li and
David J. Miller and
Zuyi Wang and
Jianhua Xuan and
Robert Clarke and
Eric P. Hoffman and
Yue Joseph Wang},
title = {caBIG\({}^{\mbox{TM}}\) {VISDA:} Modeling, visualization, and discovery
for cluster analysis of genomic data},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-383},
doi = {10.1186/1471-2105-9-383},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhuLMWXCHW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcbgc/WangXCHC08,
author = {Chen Wang and
Jianhua Xuan and
Li Chen and
Eric P. Hoffman and
Robert Clarke},
editor = {Mukesh Doble and
William Loging and
James Malone and
Vincent Shin{-}Mu Tseng},
title = {Reliability Analysis of Transcriptional Regulatory Networks},
booktitle = {International Conference on Bioinformatics, Computational Biology,
Genomics and Chemoinformatics, BCBGC-08, Orlando, Florida, {USA} ,
July 7-10, 2008},
pages = {42--48},
publisher = {{ISRST}},
year = {2008},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcbgc/WangXCHC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcbgc/XiongWZWHCX08,
author = {Jianghui Xiong and
Chen Wang and
Bai Zhang and
Yue Joseph Wang and
Eric P. Hoffman and
Robert Clarke and
Jianhua Xuan},
editor = {Mukesh Doble and
William Loging and
James Malone and
Vincent Shin{-}Mu Tseng},
title = {Inferring Condition-Specific miRNA-Gene Modules from miRNA and mRNA
Profiling Data},
booktitle = {International Conference on Bioinformatics, Computational Biology,
Genomics and Chemoinformatics, BCBGC-08, Orlando, Florida, {USA} ,
July 7-10, 2008},
pages = {49--55},
publisher = {{ISRST}},
year = {2008},
timestamp = {Tue, 14 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcbgc/XiongWZWHCX08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/ChenXRWHC08,
author = {Li Chen and
Jianhua Xuan and
Rebecca B. Riggins and
Yue Joseph Wang and
Eric P. Hoffman and
Robert Clarke},
editor = {Hamid R. Arabnia and
Mary Qu Yang and
Jack Y. Yang},
title = {Identification of Condition-specific Regulatory Modules by Multi-level
Motif and mRNA Expression Analysis},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
2 Volumes},
pages = {23--28},
publisher = {{CSREA} Press},
year = {2008},
timestamp = {Thu, 16 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/biocomp/ChenXRWHC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/GongXRWHC08,
author = {Ting Gong and
Jianhua Xuan and
Rebecca B. Riggins and
Yue Joseph Wang and
Eric P. Hoffman and
Robert Clarke},
editor = {Hamid R. Arabnia and
Mary Qu Yang and
Jack Y. Yang},
title = {Exploring Transcriptional Modules Through Integrative Gene Clustering
Guided by Transcription Factor Binding Information},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
2 Volumes},
pages = {191--197},
publisher = {{CSREA} Press},
year = {2008},
timestamp = {Mon, 04 Apr 2011 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/biocomp/GongXRWHC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/WangXCZWCH08,
author = {Chen Wang and
Jianhua Xuan and
Li Chen and
Po Zhao and
Yue Joseph Wang and
Robert Clarke and
Eric P. Hoffman},
editor = {Ion I. Mandoiu and
Raj Sunderraman and
Alexander Zelikovsky},
title = {Integrative Network Component Analysis for Regulatory Network Reconstruction},
booktitle = {Bioinformatics Research and Applications, Fourth International Symposium,
{ISBRA} 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4983},
pages = {196--207},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-79450-9\_19},
doi = {10.1007/978-3-540-79450-9\_19},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/WangXCZWCH08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isbra/GongXCRWHC08,
author = {Ting Gong and
Jianhua Xuan and
Li Chen and
Rebecca B. Riggins and
Yue Joseph Wang and
Eric P. Hoffman and
Robert Clarke},
editor = {Ion I. Mandoiu and
Raj Sunderraman and
Alexander Zelikovsky},
title = {Sparse Decomposition of Gene Expression Data to Infer Transcriptional
Modules Guided by Motif Information},
booktitle = {Bioinformatics Research and Applications, Fourth International Symposium,
{ISBRA} 2008, Atlanta, GA, USA, May 6-9, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4983},
pages = {244--255},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-79450-9\_23},
doi = {10.1007/978-3-540-79450-9\_23},
timestamp = {Wed, 25 Sep 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/isbra/GongXCRWHC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ejbsb/XuanWDFWKBWPWCCH07,
author = {Jianhua Xuan and
Yue Joseph Wang and
Yibin Dong and
Yuanjian Feng and
Bin Wang and
Javed I. Khan and
Marina Bakay and
Zuyi Wang and
Lauren Pachman and
Sara Winokur and
Yi{-}Wen Chen and
Robert Clarke and
Eric P. Hoffman},
title = {Gene Selection for Multiclass Prediction by Weighted Fisher Criterion},
journal = {{EURASIP} J. Bioinform. Syst. Biol.},
volume = {2007},
year = {2007},
url = {https://doi.org/10.1155/2007/64628},
doi = {10.1155/2007/64628},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ejbsb/XuanWDFWKBWPWCCH07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/WangXGCHW07,
author = {Chen Wang and
Jianhua Xuan and
Ting Gong and
Robert Clarke and
Eric P. Hoffman and
Yue Joseph Wang},
editor = {Hamid R. Arabnia and
Mary Qu Yang and
Jack Y. Yang},
title = {Stability-Based Dimension Estimation of {ICA} with Application to
Microarray Data Analysis},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2007, Volume I, June 25-28, 2007, Las Vegas Nevada,
{USA}},
pages = {132--138},
publisher = {{CSREA} Press},
year = {2007},
timestamp = {Tue, 14 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/biocomp/WangXGCHW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmla/ChenWSWZWCHX07,
author = {Li Chen and
Chen Wang and
Ie{-}Ming Shih and
Tian{-}Li Wang and
Zhen Zhang and
Yue Joseph Wang and
Robert Clarke and
Eric P. Hoffman and
Jianhua Xuan},
editor = {M. Arif Wani and
Mehmed M. Kantardzic and
Tao Li and
Ying Liu and
Lukasz A. Kurgan and
Jieping Ye and
Mitsunori Ogihara and
Seref Sagiroglu and
Xue{-}wen Chen and
Leif E. Peterson and
Khalid Hafeez},
title = {Biomarker Identification by Knowledge-Driven Multi-Level {ICA} and
Motif Analysis},
booktitle = {The Sixth International Conference on Machine Learning and Applications,
{ICMLA} 2007, Cincinnati, Ohio, USA, 13-15 December 2007},
pages = {560--566},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/ICMLA.2007.58},
doi = {10.1109/ICMLA.2007.58},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmla/ChenWSWZWCHX07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangWXDBFCH06,
author = {Zuyi Wang and
Yue Joseph Wang and
Jianhua Xuan and
Yibin Dong and
Marina Bakay and
Yuanjian Feng and
Robert Clarke and
Eric P. Hoffman},
title = {Optimized multilayer perceptrons for molecular classification and
diagnosis using genomic data},
journal = {Bioinform.},
volume = {22},
number = {6},
pages = {755--761},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btk036},
doi = {10.1093/BIOINFORMATICS/BTK036},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangWXDBFCH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeoGH06,
author = {Jinwook Seo and
Heather Gordish{-}Dressman and
Eric P. Hoffman},
title = {An interactive power analysis tool for microarray hypothesis testing
and generation},
journal = {Bioinform.},
volume = {22},
number = {7},
pages = {808--814},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btk052},
doi = {10.1093/BIOINFORMATICS/BTK052},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeoGH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SeoH06,
author = {Jinwook Seo and
Eric P. Hoffman},
title = {Probe set algorithms: is there a rational best bet?},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {395},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-395},
doi = {10.1186/1471-2105-7-395},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SeoH06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/caine/MolineauxXGZHCW06,
author = {Justin Molineaux and
Jianhua Xuan and
Ting Gong and
Yitan Zhu and
Eric P. Hoffman and
Robert Clarke and
Yue Joseph Wang},
editor = {Thomas Philip},
title = {ModVis: An information visualization tool for gene module discovery},
booktitle = {Proceedings of the {ISCA} 19th International Conference on Computer
Applications in Industry and Engineering, {CAINE} 2006, November 13-15,
2006, Las Vegas, Nevada, {USA}},
pages = {24--31},
publisher = {{ISCA}},
year = {2006},
timestamp = {Mon, 04 Apr 2011 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/caine/MolineauxXGZHCW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/ZhuWFXMHW06,
author = {Yitan Zhu and
Zuyi Wang and
Yuanjian Feng and
Jianhua Xuan and
David J. Miller and
Eric P. Hoffman and
Yue Wang},
title = {Phenotypic-Specific Gene Module Discovery using a Diagnostic Tree
and caBIGTM {VISDA}},
booktitle = {28th International Conference of the {IEEE} Engineering in Medicine
and Biology Society, {EMBC} 2006, New York City, NY, USA, August 30
- September 3, 2006, Main Volume},
pages = {5767--5770},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/IEMBS.2006.260031},
doi = {10.1109/IEMBS.2006.260031},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/embc/ZhuWFXMHW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/embc/GongZXLCHW06,
author = {Ting Gong and
Yitan Zhu and
Jianhua Xuan and
Huai Li and
Robert Clarke and
Eric P. Hoffman and
Yue Wang},
title = {Latent Variable and nICA Modeling of Pathway Gene Module Composite},
booktitle = {28th International Conference of the {IEEE} Engineering in Medicine
and Biology Society, {EMBC} 2006, New York City, NY, USA, August 30
- September 3, 2006, Main Volume},
pages = {5872--5875},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/IEMBS.2006.260697},
doi = {10.1109/IEMBS.2006.260697},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/embc/GongZXLCHW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/XuanHCW05,
author = {Jianhua Xuan and
Eric P. Hoffman and
Robert Clarke and
Yue Joseph Wang},
title = {Normalization of Microarray Data by Iterative Nonlinear Regression},
booktitle = {Fifth {IEEE} International Symposium on Bioinformatic and Bioengineering
{(BIBE} 2005), 19-21 October 2005, Minneapolis, MN, {USA}},
pages = {267--270},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/BIBE.2005.43},
doi = {10.1109/BIBE.2005.43},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/XuanHCW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/ws/05/XuanDKCHW05,
author = {Jianhua Xuan and
Yibin Dong and
Javed I. Khan and
Robert Clarke and
Eric P. Hoffman and
Yue Wang},
editor = {Matthew He and
Giri Narasimhan and
Sergei V. Petoukhov},
title = {Gene Selection by Weighted Fisher criterion for Multiclass Prediction},
booktitle = {Advances in Bioinformatics and Its Applications},
series = {Series in mathematical biology and medicine},
volume = {8},
publisher = {World Scientific},
year = {2005},
url = {https://doi.org/10.1142/9789812702098\_0023},
doi = {10.1142/9789812702098\_0023},
timestamp = {Mon, 06 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/books/ws/05/XuanDKCHW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeoBCHSH04,
author = {Jinwook Seo and
Marina Bakay and
Yi{-}Wen Chen and
Sara Hilmer and
Ben Shneiderman and
Eric P. Hoffman},
title = {Interactively optimizing signal-to-noise ratios in expression profiling:
project-specific algorithm selection and detection p-value weighting
in Affymetrix microarrays},
journal = {Bioinform.},
volume = {20},
number = {16},
pages = {2534--2544},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth280},
doi = {10.1093/BIOINFORMATICS/BTH280},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeoBCHSH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChenZMCADJH04,
author = {Josephine Chen and
Po Zhao and
Donald Massaro and
Linda B. Clerch and
Richard R. Almon and
Debra C. DuBois and
William J. Jusko and
Eric P. Hoffman},
title = {The {PEPR} GeneChip data warehouse, and implementation of a dynamic
time series query tool {(SGQT)} with graphical interface},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {578--581},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh003},
doi = {10.1093/NAR/GKH003},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ChenZMCADJH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpr/XuanDKHCW04,
author = {Jianhua Xuan and
Yibin Dong and
Javed I. Khan and
Eric P. Hoffman and
Robert Clarke and
Yue Joseph Wang},
title = {Robust Feature Selection by Weighted Fisher Criterion for Multiclass
Prediction in Gene Expression Profiling},
booktitle = {17th International Conference on Pattern Recognition, {ICPR} 2004,
Cambridge, UK, August 23-26, 2004},
pages = {291--294},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/ICPR.2004.1334170},
doi = {10.1109/ICPR.2004.1334170},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icpr/XuanDKHCW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icmcs/SeoBZCCSH03,
author = {Jinwook Seo and
Marina Bakay and
Po Zhao and
Yi{-}Wen Chen and
Priscilla Clarkson and
Ben Shneiderman and
Eric P. Hoffman},
title = {Interactive color mosaic and dendrogram displays for signal/noise
optimization in microarray data analysis},
booktitle = {Proceedings of the 2003 {IEEE} International Conference on Multimedia
and Expo, {ICME} 2003, 6-9 July 2003, Baltimore, MD, {USA}},
pages = {461--464},
publisher = {{IEEE} Computer Society},
year = {2003},
url = {https://doi.org/10.1109/ICME.2003.1221348},
doi = {10.1109/ICME.2003.1221348},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icmcs/SeoBZCCSH03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BakayCBZNH02,
author = {Marina Bakay and
Yi{-}Wen Chen and
Rehannah H. A. Borup and
Po Zhao and
Kanneboyina Nagaraju and
Eric P. Hoffman},
title = {Sources of variability and effect of experimental approach on expression
profiling data interpretation},
journal = {{BMC} Bioinform.},
volume = {3},
pages = {4},
year = {2002},
url = {https://doi.org/10.1186/1471-2105-3-4},
doi = {10.1186/1471-2105-3-4},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BakayCBZNH02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BorupTCTLVH02,
author = {Rehannah H. A. Borup and
Stefano Toppo and
Yi{-}Wen Chen and
Tanya M. Teslovich and
Gerolamo Lanfranchi and
Giorgio Valle and
Eric P. Hoffman},
title = {Development and production of an oligonucleotide MuscleChip: use for
validation of ambiguous ESTs},
journal = {{BMC} Bioinform.},
volume = {3},
pages = {33},
year = {2002},
url = {https://doi.org/10.1186/1471-2105-3-33},
doi = {10.1186/1471-2105-3-33},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BorupTCTLVH02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/PathakHP94,
author = {Dhiraj K. Pathak and
Eric P. Hoffman and
Mark W. Perlin},
editor = {Russ B. Altman and
Douglas L. Brutlag and
Peter D. Karp and
Richard H. Lathrop and
David B. Searls},
title = {Intelligent DNA-Based Molecular Diagnostics Using Linked Genetic Markers},
booktitle = {Proceedings of the Second International Conference on Intelligent
Systems for Molecular Biology, August 14-17, 1994, Stanford University,
Stanford, California, {USA}},
pages = {331--339},
publisher = {{AAAI}},
year = {1994},
url = {http://www.aaai.org/Library/ISMB/1994/ismb94-041.php},
timestamp = {Thu, 13 Dec 2012 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/PathakHP94.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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