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ORCIDBibTeX records: Ivo Grosse
@article{DBLP:journals/bioinformatics/LawrenceHGA21,
author = {Travis J. Lawrence and
Fatemeh Hadi{-}Nezhad and
Ivo Grosse and
David H. Ardell},
title = {tSFM 1.0: tRNA Structure-Function Mapper},
journal = {Bioinform.},
volume = {37},
number = {20},
pages = {3654--3656},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab247},
doi = {10.1093/BIOINFORMATICS/BTAB247},
timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/LawrenceHGA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WeinholdtWKAKEV19,
author = {Claus Weinholdt and
Henri Wichmann and
Johanna Kotrba and
David H. Ardell and
Matthias Kappler and
Alexander W. Eckert and
Dirk Vordermark and
Ivo Grosse},
title = {Prediction of regulatory targets of alternative isoforms of the epidermal
growth factor receptor in a glioblastoma cell line},
journal = {{BMC} Bioinform.},
volume = {20},
number = {1},
pages = {434:1--434:14},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-2944-9},
doi = {10.1186/S12859-019-2944-9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WeinholdtWKAKEV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ml/EggelingGK19,
author = {Ralf Eggeling and
Ivo Grosse and
Mikko Koivisto},
title = {Algorithms for learning parsimonious context trees},
journal = {Mach. Learn.},
volume = {108},
number = {6},
pages = {879--911},
year = {2019},
url = {https://doi.org/10.1007/s10994-018-5770-9},
doi = {10.1007/S10994-018-5770-9},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ml/EggelingGK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DrostGLQG18,
author = {Hajk{-}Georg Drost and
Alexander Gabel and
Jialin Liu and
Marcel Quint and
Ivo Grosse},
title = {myTAI: evolutionary transcriptomics with {R}},
journal = {Bioinform.},
volume = {34},
number = {9},
pages = {1589--1590},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx835},
doi = {10.1093/BIOINFORMATICS/BTX835},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DrostGLQG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/HedtkeLGM18,
author = {Ivo Hedtke and
Ioana M. Lemnian and
Ivo Grosse and
Matthias M{\"{u}}ller{-}Hannemann},
title = {Optimal Block-Based Trimming for Next Generation Sequencing},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {15},
number = {2},
pages = {364--376},
year = {2018},
url = {https://doi.org/10.1109/TCBB.2017.2696525},
doi = {10.1109/TCBB.2017.2696525},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/HedtkeLGM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/EggelingGG17,
author = {Ralf Eggeling and
Ivo Grosse and
Jan Grau},
title = {InMoDe: tools for learning and visualizing intra-motif dependencies
of {DNA} binding sites},
journal = {Bioinform.},
volume = {33},
number = {4},
pages = {580--582},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btw689},
doi = {10.1093/BIOINFORMATICS/BTW689},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/EggelingGG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NettlingTCG17,
author = {Martin Nettling and
Hendrik Treutler and
Jes{\'{u}}s Cerquides and
Ivo Grosse},
title = {Unrealistic phylogenetic trees may improve phylogenetic footprinting},
journal = {Bioinform.},
volume = {33},
number = {11},
pages = {1639--1646},
year = {2017},
url = {https://doi.org/10.1093/bioinformatics/btx033},
doi = {10.1093/BIOINFORMATICS/BTX033},
timestamp = {Tue, 28 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NettlingTCG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NettlingTCG17,
author = {Martin Nettling and
Hendrik Treutler and
Jes{\'{u}}s Cerquides and
Ivo Grosse},
title = {Combining phylogenetic footprinting with motif models incorporating
intra-motif dependencies},
journal = {{BMC} Bioinform.},
volume = {18},
number = {1},
pages = {141:1--141:10},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1495-1},
doi = {10.1186/S12859-017-1495-1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NettlingTCG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/it/GrosseH16,
author = {Ivo Grosse and
Katrin Hoffmann},
title = {Bioinformatics challenges of next generation sequencing},
journal = {it Inf. Technol.},
volume = {58},
number = {3},
pages = {117--118},
year = {2016},
url = {https://doi.org/10.1515/itit-2016-0029},
doi = {10.1515/ITIT-2016-0029},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/it/GrosseH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/GrauGK15,
author = {Jan Grau and
Ivo Grosse and
Jens Keilwagen},
title = {{PRROC:} computing and visualizing precision-recall and receiver operating
characteristic curves in {R}},
journal = {Bioinform.},
volume = {31},
number = {15},
pages = {2595--2597},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv153},
doi = {10.1093/BIOINFORMATICS/BTV153},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/GrauGK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MorenoBHMTDDTGH15,
author = {Pablo A. Moreno and
Stephan Beisken and
Bhavana Harsha and
Venkatesh Muthukrishnan and
Ilinca Tudose and
Adriano Dekker and
Stefanie Dornfeldt and
Franziska Taruttis and
Ivo Grosse and
Janna Hastings and
Steffen Neumann and
Christoph Steinbeck},
title = {BiNChE: {A} web tool and library for chemical enrichment analysis
based on the ChEBI ontology},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {56:1--56:7},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0486-3},
doi = {10.1186/S12859-015-0486-3},
timestamp = {Wed, 24 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/MorenoBHMTDDTGH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/EggelingRMG15,
author = {Ralf Eggeling and
Teemu Roos and
Petri Myllym{\"{a}}ki and
Ivo Grosse},
title = {Inferring intra-motif dependencies of {DNA} binding sites from ChIP-seq
data},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {375:1--375:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0797-4},
doi = {10.1186/S12859-015-0797-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/EggelingRMG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NettlingTGKPG15,
author = {Martin Nettling and
Hendrik Treutler and
Jan Grau and
Jens Keilwagen and
Stefan Posch and
Ivo Grosse},
title = {DiffLogo: a comparative visualization of sequence motifs},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {387:1--387:9},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0767-x},
doi = {10.1186/S12859-015-0767-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/NettlingTGKPG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/computation/FischerFJKMG15,
author = {Anja Fischer and
Frank Fischer and
Gerold J{\"{a}}ger and
Jens Keilwagen and
Paul Molitor and
Ivo Grosse},
title = {Computational Recognition of {RNA} Splice Sites by Exact Algorithms
for the Quadratic Traveling Salesman Problem},
journal = {Comput.},
volume = {3},
number = {2},
pages = {285--298},
year = {2015},
url = {https://doi.org/10.3390/computation3020285},
doi = {10.3390/COMPUTATION3020285},
timestamp = {Thu, 01 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/computation/FischerFJKMG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icml/EggelingKG15,
author = {Ralf Eggeling and
Mikko Koivisto and
Ivo Grosse},
editor = {Francis R. Bach and
David M. Blei},
title = {Dealing with small data: On the generalization of context trees},
booktitle = {Proceedings of the 32nd International Conference on Machine Learning,
{ICML} 2015, Lille, France, 6-11 July 2015},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {37},
pages = {1245--1253},
publisher = {JMLR.org},
year = {2015},
url = {http://proceedings.mlr.press/v37/eggeling15.html},
timestamp = {Wed, 29 May 2019 08:41:45 +0200},
biburl = {https://dblp.org/rec/conf/icml/EggelingKG15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NettlingTBG14,
author = {Martin Nettling and
Nils Thieme and
Andreas Both and
Ivo Grosse},
title = {{DRUMS:} Disk Repository with Update Management and Select option
for high throughput sequencing data},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {38},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-38},
doi = {10.1186/1471-2105-15-38},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NettlingTBG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/dam/FischerFJKMG14,
author = {Anja Fischer and
Frank Fischer and
Gerold J{\"{a}}ger and
Jens Keilwagen and
Paul Molitor and
Ivo Grosse},
title = {Exact algorithms and heuristics for the Quadratic Traveling Salesman
Problem with an application in bioinformatics},
journal = {Discret. Appl. Math.},
volume = {166},
pages = {97--114},
year = {2014},
url = {https://doi.org/10.1016/j.dam.2013.09.011},
doi = {10.1016/J.DAM.2013.09.011},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/dam/FischerFJKMG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aistats/EggelingRMG14,
author = {Ralf Eggeling and
Teemu Roos and
Petri Myllym{\"{a}}ki and
Ivo Grosse},
title = {Robust learning of inhomogeneous PMMs},
booktitle = {Proceedings of the Seventeenth International Conference on Artificial
Intelligence and Statistics, {AISTATS} 2014, Reykjavik, Iceland, April
22-25, 2014},
series = {{JMLR} Workshop and Conference Proceedings},
volume = {33},
pages = {229--237},
publisher = {JMLR.org},
year = {2014},
url = {http://proceedings.mlr.press/v33/eggeling14.html},
timestamp = {Wed, 29 May 2019 08:41:44 +0200},
biburl = {https://dblp.org/rec/conf/aistats/EggelingRMG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/alcob/HedtkeLMG14,
author = {Ivo Hedtke and
Ioana M. Lemnian and
Matthias M{\"{u}}ller{-}Hannemann and
Ivo Grosse},
editor = {Adrian{-}Horia Dediu and
Carlos Mart{\'{\i}}n{-}Vide and
Bianca Truthe},
title = {On Optimal Read Trimming in Next Generation Sequencing and Its Complexity},
booktitle = {Algorithms for Computational Biology - First International Conference,
AlCoB 2014, Tarragona, Spain, July 1-3, 2014, Proceedigns},
series = {Lecture Notes in Computer Science},
volume = {8542},
pages = {83--94},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-07953-0\_7},
doi = {10.1007/978-3-319-07953-0\_7},
timestamp = {Mon, 16 Sep 2019 15:22:41 +0200},
biburl = {https://dblp.org/rec/conf/alcob/HedtkeLMG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/data/BecksteinBBBBDDGHKLMMWZ14,
author = {Clemens Beckstein and
Sebastian B{\"{o}}cker and
Martin Bogdan and
Helge Bruehlheide and
H. Martin B{\"{u}}cker and
Joachim Denzler and
Peter Dittrich and
Ivo Grosse and
Alexander Hinneburg and
Birgitta K{\"{o}}nig{-}Ries and
Felicitas L{\"{o}}ffler and
Manja Marz and
Matthias M{\"{u}}ller{-}Hannemann and
Martin Winter and
Wolf Zimmermann},
editor = {Markus Helfert and
Andreas Holzinger and
Orlando Belo and
Chiara Francalanci},
title = {Explorative Analysis of Heterogeneous, Unstructured, and Uncertain
Data - {A} Computer Science Perspective on Biodiversity Research},
booktitle = {{DATA} 2014 - Proceedings of 3rd International Conference on Data
Management Technologies and Applications, Vienna, Austria, 29-31 August,
2014},
pages = {251--257},
publisher = {SciTePress},
year = {2014},
url = {https://doi.org/10.5220/0005098402510257},
doi = {10.5220/0005098402510257},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/data/BecksteinBBBBDDGHKLMMWZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/PoeschlGG14,
author = {Yvonne Poeschl and
Ivo Grosse and
Andreas Gogol{-}D{\"{o}}ring},
editor = {Robert Giegerich and
Ralf Hofest{\"{a}}dt and
Tim W. Nattkemper},
title = {Explaining gene responses by linear modeling},
booktitle = {German conference on bioinformatics 2014, September 28 - October 1,
2014, Bielefeld, Germany},
series = {{LNI}},
volume = {{P-235}},
pages = {27--35},
publisher = {{GI}},
year = {2014},
url = {https://dl.gi.de/handle/20.500.12116/3048},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/PoeschlGG14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/GrauPGK14,
author = {Jan Grau and
Stefan Posch and
Ivo Grosse and
Jens Keilwagen},
editor = {Robert Giegerich and
Ralf Hofest{\"{a}}dt and
Tim W. Nattkemper},
title = {A general approach for discriminative de novo motif discovery from
high-throughput data},
booktitle = {German conference on bioinformatics 2014, September 28 - October 1,
2014, Bielefeld, Germany},
series = {{LNI}},
volume = {{P-235}},
pages = {41--43},
publisher = {{GI}},
year = {2014},
url = {https://dl.gi.de/handle/20.500.12116/3050},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/GrauPGK14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/GrauKGPPSSG13,
author = {Jan Grau and
Jens Keilwagen and
Andr{\'{e}} Gohr and
Ivan A. Paponov and
Stefan Posch and
Michael Seifert and
Marc Strickert and
Ivo Grosse},
title = {Dispom: a Discriminative de-novo Motif Discovery Tool Based on the
Jstacs Library},
journal = {J. Bioinform. Comput. Biol.},
volume = {11},
number = {1},
year = {2013},
url = {https://doi.org/10.1142/S0219720013400064},
doi = {10.1142/S0219720013400064},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/GrauKGPPSSG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/LemnianEG13,
author = {Ioana M. Lemnian and
Ralf Eggeling and
Ivo Grosse},
editor = {Tim Bei{\ss}barth and
Martin Kollmar and
Andreas Leha and
Burkhard Morgenstern and
Anne{-}Kathrin Schultz and
Stephan Waack and
Edgar Wingender},
title = {Extended Sunflower Hidden Markov Models for the recognition of homotypic
cis-regulatory modules\}},
booktitle = {German Conference on Bioinformatics 2013, {GCB} 2013, September 10-13,
2013, G{\"{o}}ttingen, Germany},
series = {OASIcs},
volume = {34},
pages = {101--109},
publisher = {Schloss Dagstuhl - Leibniz-Zentrum f{\"{u}}r Informatik},
year = {2013},
url = {https://doi.org/10.4230/OASIcs.GCB.2013.101},
doi = {10.4230/OASICS.GCB.2013.101},
timestamp = {Tue, 15 Feb 2022 09:40:04 +0100},
biburl = {https://dblp.org/rec/conf/gcb/LemnianEG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pkdd/EggelingGBWG13,
author = {Ralf Eggeling and
Andr{\'{e}} Gohr and
Pierre{-}Yves Bourguignon and
Edgar Wingender and
Ivo Grosse},
editor = {Hendrik Blockeel and
Kristian Kersting and
Siegfried Nijssen and
Filip Zelezn{\'{y}}},
title = {Inhomogeneous Parsimonious Markov Models},
booktitle = {Machine Learning and Knowledge Discovery in Databases - European Conference,
{ECML} {PKDD} 2013, Prague, Czech Republic, September 23-27, 2013,
Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {8188},
pages = {321--336},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-40988-2\_21},
doi = {10.1007/978-3-642-40988-2\_21},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pkdd/EggelingGBWG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/BellonCG13,
author = {Victor Bellon and
Jes{\'{u}}s Cerquides and
Ivo Grosse},
title = {Bayesian Conditional Gaussian Network Classifiers with Applications
to Mass Spectra Classification},
journal = {CoRR},
volume = {abs/1308.6181},
year = {2013},
url = {http://arxiv.org/abs/1308.6181},
eprinttype = {arXiv},
eprint = {1308.6181},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/BellonCG13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ReczkoMAGH12,
author = {Martin Reczko and
Manolis Maragkakis and
Panagiotis Alexiou and
Ivo Grosse and
Artemis G. Hatzigeorgiou},
title = {Functional microRNA targets in protein coding sequences},
journal = {Bioinform.},
volume = {28},
number = {6},
pages = {771--776},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts043},
doi = {10.1093/BIOINFORMATICS/BTS043},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ReczkoMAGH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jmlr/GrauKGHPG12,
author = {Jan Grau and
Jens Keilwagen and
Andr{\'{e}} Gohr and
Berit Haldemann and
Stefan Posch and
Ivo Grosse},
title = {Jstacs: {A} Java Framework for Statistical Analysis and Classification
of Biological Sequences},
journal = {J. Mach. Learn. Res.},
volume = {13},
pages = {1967--1971},
year = {2012},
url = {https://dl.acm.org/doi/10.5555/2503308.2343706},
doi = {10.5555/2503308.2343706},
timestamp = {Thu, 02 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jmlr/GrauKGHPG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/SeifertGSG12,
author = {Michael Seifert and
Andr{\'{e}} Gohr and
Marc Strickert and
Ivo Grosse},
title = {Parsimonious Higher-Order Hidden Markov Models for Improved Array-CGH
Analysis with Applications to \emph{Arabidopsis thaliana}},
journal = {PLoS Comput. Biol.},
volume = {8},
number = {1},
year = {2012},
url = {https://doi.org/10.1371/journal.pcbi.1002286},
doi = {10.1371/JOURNAL.PCBI.1002286},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/SeifertGSG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeifertSSG11,
author = {Michael Seifert and
Marc Strickert and
Alexander Schliep and
Ivo Grosse},
title = {Exploiting prior knowledge and gene distances in the analysis of tumor
expression profiles with extended Hidden Markov Models},
journal = {Bioinform.},
volume = {27},
number = {12},
pages = {1645--1652},
year = {2011},
url = {https://doi.org/10.1093/bioinformatics/btr199},
doi = {10.1093/BIOINFORMATICS/BTR199},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeifertSSG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KeilwagenGPPSG11,
author = {Jens Keilwagen and
Jan Grau and
Ivan A. Paponov and
Stefan Posch and
Marc Strickert and
Ivo Grosse},
title = {De-Novo Discovery of Differentially Abundant Transcription Factor
Binding Sites Including Their Positional Preference},
journal = {PLoS Comput. Biol.},
volume = {7},
number = {2},
year = {2011},
url = {https://doi.org/10.1371/journal.pcbi.1001070},
doi = {10.1371/JOURNAL.PCBI.1001070},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/KeilwagenGPPSG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KeilwagenGPSG10,
author = {Jens Keilwagen and
Jan Grau and
Stefan Posch and
Marc Strickert and
Ivo Grosse},
title = {Unifying generative and discriminative learning principles},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {98},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-98},
doi = {10.1186/1471-2105-11-98},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KeilwagenGPSG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KeilwagenGPG10,
author = {Jens Keilwagen and
Jan Grau and
Stefan Posch and
Ivo Grosse},
title = {Apples and oranges: avoiding different priors in Bayesian {DNA} sequence
analysis},
journal = {{BMC} Bioinform.},
volume = {11},
pages = {149},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-149},
doi = {10.1186/1471-2105-11-149},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KeilwagenGPG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AlexiouVGPDMGSH10,
author = {Panagiotis Alexiou and
Thanasis Vergoulis and
Martin Gleditzsch and
George Prekas and
Theodore Dalamagas and
Molly Megraw and
Ivo Grosse and
Timos K. Sellis and
Artemis G. Hatzigeorgiou},
title = {miRGen 2.0: a database of microRNA genomic information and regulation},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {137--141},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp888},
doi = {10.1093/NAR/GKP888},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AlexiouVGPDMGSH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/GrauAGHKMWP10,
author = {Jan Grau and
Daniel Arend and
Ivo Grosse and
Artemis G. Hatzigeorgiou and
Jens Keilwagen and
Manolis Maragkakis and
Claus Weinholdt and
Stefan Posch},
editor = {Dietmar Schomburg and
Andreas Grote},
title = {Predicting miRNA targets utilizing an Extended Profile {HMM}},
booktitle = {German Conference on Bioinformatics 2010, September 20-22, 2010, Technische
Universit{\"{a}}t Carolo Wilhelmina zu Braunschweig, Germany},
series = {{LNI}},
volume = {{P-173}},
pages = {81--91},
publisher = {{GI}},
year = {2010},
url = {https://dl.gi.de/handle/20.500.12116/19675},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/GrauAGHKMWP10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SeifertKSG09,
author = {Michael Seifert and
Jens Keilwagen and
Marc Strickert and
Ivo Grosse},
title = {Utilizing gene pair orientations for HMM-based analysis of promoter
array ChIP-chip data},
journal = {Bioinform.},
volume = {25},
number = {16},
pages = {2118--2125},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp276},
doi = {10.1093/BIOINFORMATICS/BTP276},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SeifertKSG09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biostec/SeifertBKMHRCGS09,
author = {Michael Seifert and
Ali Banaei and
Jens Keilwagen and
Michael Florian Mette and
Andreas Houben and
Fran{\c{c}}ois Roudier and
Vincent Colot and
Ivo Grosse and
Marc Strickert},
editor = {Pedro Encarna{\c{c}}{\~{a}}o and
Ant{\'{o}}nio P. Veloso},
title = {Array-based Genome Comparison of Arabidopsis Ecotypes using Hidden
Markov Models},
booktitle = {{BIOSIGNALS} 2009 - Proceedings of the International Conference on
Bio-inspired Systems and Signal Processing, Porto, Portugal, January
14-17, 2009},
pages = {3--11},
publisher = {{INSTICC} Press},
year = {2009},
timestamp = {Mon, 29 Aug 2022 17:06:59 +0200},
biburl = {https://dblp.org/rec/conf/biostec/SeifertBKMHRCGS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/gcb/2009,
editor = {Ivo Grosse and
Steffen Neumann and
Stefan Posch and
Falk Schreiber and
Peter F. Stadler},
title = {German Conference on Bioinformatics 2009, 28th to 30th September 2009,
Martin Luther University Halle-Wittenberg, Germany},
series = {{LNI}},
volume = {{P-157}},
publisher = {{GI}},
year = {2009},
url = {https://dl.gi.de/handle/20.500.12116/21225},
isbn = {978-3-88579-251-2},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/gcb/2009.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/SeifertKSG08,
author = {Michael Seifert and
Jens Keilwagen and
Marc Strickert and
Ivo Grosse},
editor = {Andreas Beyer and
Michael Schroeder},
title = {Utilizing Promoter Pair Orientations for HMM-based Analysis of ChIP-chip
Data},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 2008,
September 9-12, 2008, Dresden, Germany},
series = {{LNI}},
volume = {{P-136}},
pages = {116--127},
publisher = {{GI}},
year = {2008},
url = {https://dl.gi.de/handle/20.500.12116/21208},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/SeifertKSG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbcb/PoschGGBKG07,
author = {Stefan Posch and
Jan Grau and
Andr{\'{e}} Gohr and
Irad E. Ben{-}Gal and
Alexander E. Kel and
Ivo Grosse},
title = {Recognition of cis-Regulatory Elements with Vombat},
journal = {J. Bioinform. Comput. Biol.},
volume = {5},
number = {2b},
pages = {561--577},
year = {2007},
url = {https://doi.org/10.1142/S0219720007002886},
doi = {10.1142/S0219720007002886},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbcb/PoschGGBKG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/KuenneGMSSSSSW07,
author = {Christian K{\"{u}}nne and
Ivo Grosse and
Inge Matthies and
Uwe Scholz and
Tatjana Sretenovic{-}Rajicic and
Nils Stein and
Andreas Stephanik and
Burkhard Steuernagel and
Stephan Weise},
title = {Using Data Warehouse Technology in Crop Plant Bioinformatics},
journal = {J. Integr. Bioinform.},
volume = {4},
number = {1},
year = {2007},
url = {https://doi.org/10.2390/biecoll-jib-2007-88},
doi = {10.2390/BIECOLL-JIB-2007-88},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jib/KuenneGMSSSSSW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gcb/GrauKKGP07,
author = {Jan Grau and
Jens Keilwagen and
Alexander E. Kel and
Ivo Grosse and
Stefan Posch},
editor = {Claudia Falter and
Alexander Schliep and
Joachim Selbig and
Martin Vingron and
Dirk Walther},
title = {Supervised Posteriors for DNA-motif Classification},
booktitle = {Proceedings of the German Conference on Bioinformatics, {GCB} 2007,
September 26-28, 2007, Potsdam, Germany},
series = {{LNI}},
volume = {{P-115}},
pages = {123--134},
publisher = {{GI}},
year = {2007},
url = {https://dl.gi.de/handle/20.500.12116/22362},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gcb/GrauKKGP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lwa/GrauKGP07,
author = {Jan Grau and
Jens Keilwagen and
Ivo Grosse and
Stefan Posch},
editor = {Alexander Hinneburg},
title = {On the relevance of model orders to discriminative learning of Markov
models},
booktitle = {{LWA} 2007: Lernen - Wissen - Adaption, Halle, Deutschland, September
2007, Workshop Proceedings},
pages = {61--66},
publisher = {Martin-Luther-University Halle-Wittenberg},
year = {2007},
timestamp = {Thu, 05 Jul 2018 07:57:33 +0200},
biburl = {https://dblp.org/rec/conf/lwa/GrauKGP07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lwa/KeilwagenGPG07,
author = {Jens Keilwagen and
Jan Grau and
Stefan Posch and
Ivo Grosse},
editor = {Alexander Hinneburg},
title = {Recognition of splice sites using maximum conditional likelihood},
booktitle = {{LWA} 2007: Lernen - Wissen - Adaption, Halle, Deutschland, September
2007, Workshop Proceedings},
pages = {67--72},
publisher = {Martin-Luther-University Halle-Wittenberg},
year = {2007},
timestamp = {Fri, 16 Nov 2007 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/lwa/KeilwagenGPG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WeiseGKKSSJ06,
author = {Stephan Weise and
Ivo Grosse and
Christian Klukas and
Dirk Kosch{\"{u}}tzki and
Uwe Scholz and
Falk Schreiber and
Bj{\"{o}}rn H. Junker},
title = {Meta-All: a system for managing metabolic pathway information},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {465},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-465},
doi = {10.1186/1471-2105-7-465},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/WeiseGKKSSJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GrauBPG06,
author = {Jan Grau and
Irad E. Ben{-}Gal and
Stefan Posch and
Ivo Grosse},
title = {{VOMBAT:} prediction of transcription factor binding sites using variable
order Bayesian trees},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Web-Server-Issue},
pages = {529--533},
year = {2006},
url = {https://doi.org/10.1093/nar/gkl212},
doi = {10.1093/NAR/GKL212},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GrauBPG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dils/MielordtGK06,
author = {Sven Mielordt and
Ivo Grosse and
J{\"{u}}rgen Kleffe},
editor = {Ulf Leser and
Felix Naumann and
Barbara A. Eckman},
title = {Data Structures for Genome Annotation, Alternative Splicing, and Validation},
booktitle = {Data Integration in the Life Sciences, Third International Workshop,
{DILS} 2006, Hinxton, UK, July 20-22, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4075},
pages = {114--123},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11799511\_11},
doi = {10.1007/11799511\_11},
timestamp = {Tue, 14 May 2019 10:00:43 +0200},
biburl = {https://dblp.org/rec/conf/dils/MielordtGK06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/Ben-GalSGGASPG05,
author = {Irad E. Ben{-}Gal and
Ayala Shani and
Andr{\'{e}} Gohr and
Jan Grau and
S. Arviv and
Armin Shmilovici and
Stefan Posch and
Ivo Grosse},
title = {Identification of transcription factor binding sites with variable-order
Bayesian networks},
journal = {Bioinform.},
volume = {21},
number = {11},
pages = {2657--2666},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti410},
doi = {10.1093/BIOINFORMATICS/BTI410},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/Ben-GalSGGASPG05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KunneLFMTGS05,
author = {Christian K{\"{u}}nne and
Matthias Lange and
T. Funke and
H. Miehe and
Thomas Thiel and
Ivo Grosse and
Uwe Scholz},
title = {{CR-EST:} a resource for crop ESTs},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {619--621},
year = {2005},
url = {https://doi.org/10.1093/nar/gki119},
doi = {10.1093/NAR/GKI119},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/KunneLFMTGS05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/complexity/LiG04,
author = {Wentian Li and
Ivo Grosse},
title = {Comments on "linguistic features in eukaryotic genomes"},
journal = {Complex.},
volume = {9},
number = {4},
pages = {10--11},
year = {2004},
url = {https://doi.org/10.1002/cplx.20022},
doi = {10.1002/CPLX.20022},
timestamp = {Thu, 24 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/complexity/LiG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/LiSG04,
author = {Wentian Li and
Fengzhu Sun and
Ivo Grosse},
title = {Extreme Value Distribution Based Gene Selection Criteria for Discriminant
Microarray Data Analysis Using Logistic Regression},
journal = {J. Comput. Biol.},
volume = {11},
number = {2/3},
pages = {215--226},
year = {2004},
url = {https://doi.org/10.1089/1066527041410445},
doi = {10.1089/1066527041410445},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/LiSG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/LiG03,
author = {Wentian Li and
Ivo Grosse},
editor = {Martin Vingron and
Sorin Istrail and
Pavel A. Pevzner and
Michael S. Waterman and
Webb Miller},
title = {Gene selection criterion for discriminant microarray data analysis
based on extreme value distributions},
booktitle = {Proceedings of the Sventh Annual International Conference on Computational
Biology, {RECOMB} 2003, Berlin, Germany, April 10-13, 2003},
pages = {217--223},
publisher = {{ACM}},
year = {2003},
url = {https://doi.org/10.1145/640075.640103},
doi = {10.1145/640075.640103},
timestamp = {Mon, 13 May 2019 09:30:09 +0200},
biburl = {https://dblp.org/rec/conf/recomb/LiG03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/LiBHG02,
author = {Wentian Li and
Pedro Bernaola{-}Galv{\'{a}}n and
Fatameh Haghighi and
Ivo Grosse},
title = {Applications of Recursive Segmentation to the Analysis of {DNA} Sequences},
journal = {Comput. Chem.},
volume = {26},
number = {5},
pages = {491--510},
year = {2002},
url = {https://doi.org/10.1016/S0097-8485(02)00010-4},
doi = {10.1016/S0097-8485(02)00010-4},
timestamp = {Mon, 18 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/LiBHG02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/visualization/HoffmanGMGS97,
author = {Patrick Hoffman and
Georges G. Grinstein and
Kenneth A. Marx and
Ivo Grosse and
Eugene Stanley},
title = {{DNA} visual and analytic data mining},
booktitle = {8th {IEEE} Visualization Conference, {IEEE} Vis 1997, Phoenix, AZ,
USA, October 19-24, 1997, Proceedings},
pages = {437--442},
publisher = {{IEEE} Computer Society and {ACM}},
year = {1997},
url = {https://doi.org/10.1109/VISUAL.1997.663916},
doi = {10.1109/VISUAL.1997.663916},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/visualization/HoffmanGMGS97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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