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ORCIDBibTeX records: Julien Gobeill
@article{DBLP:journals/biodb/PascheMGMCNR23,
author = {Emilie Pasche and
Ana{\"{\i}}s Mottaz and
Julien Gobeill and
Pierre{-}Andr{\'{e}} Michel and
D{\'{e}}borah Caucheteur and
Nona Naderi and
Patrick Ruch},
title = {Assessing the use of supplementary materials to improve genomic variant
discovery},
journal = {Database J. Biol. Databases Curation},
volume = {2023},
year = {2023},
url = {https://doi.org/10.1093/database/baad017},
doi = {10.1093/DATABASE/BAAD017},
timestamp = {Sun, 16 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/PascheMGMCNR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CaucheteurPRGMMAOPR23,
author = {D{\'{e}}borah Caucheteur and
Zo{\"{e}} May Pendlington and
Paola Roncaglia and
Julien Gobeill and
Luc Mottin and
Nicolas Matentzoglu and
Donat Agosti and
David Osumi{-}Sutherland and
Helen E. Parkinson and
Patrick Ruch},
title = {COVoc and COVTriage: novel resources to support literature triage},
journal = {Bioinform.},
volume = {39},
number = {1},
year = {2023},
url = {https://doi.org/10.1093/bioinformatics/btac800},
doi = {10.1093/BIOINFORMATICS/BTAC800},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/CaucheteurPRGMMAOPR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fdgth/MottinGJAGKEWGSCTLLKMPFR23,
author = {Luc Mottin and
Jean{-}Philippe Goldman and
Christoph J{\"{a}}ggli and
Rita Achermann and
Julien Gobeill and
Julien Knafou and
Julien Ehrsam and
Alexandre Wicky and
Camille L. Gerard and
Tanja Schwenk and
M{\'{e}}linda Charrier and
Petros Tsantoulis and
Christian Lovis and
Alexander B. Leichtle and
Michael Kiessling and
Olivier Michielin and
Sylvain Pradervand and
Vasiliki Foufi and
Patrick Ruch},
title = {Multilingual {RECIST} classification of radiology reports using supervised
learning},
journal = {Frontiers Digit. Health},
volume = {5},
year = {2023},
url = {https://doi.org/10.3389/fdgth.2023.1195017},
doi = {10.3389/FDGTH.2023.1195017},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fdgth/MottinGJAGKEWGSCTLLKMPFR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MottinGJAGKEWGS22,
author = {Luc Mottin and
Jean{-}Philippe Goldman and
Christoph J{\"{a}}ggli and
Rita Achermann and
Julien Gobeill and
Julien Knafou and
Julien Ehrsam and
Alexandre Wicky and
Camille L. Gerard and
Tanja Schwenk and
M{\'{e}}linda Charrier and
Petros Tsantoulis and
Christian Lovis and
Alexander B. Leichtle and
Michael Kiessling and
Olivier Michielin and
Sylvain Pradervand and
Vasiliki Foufi and
Patrick Ruch},
title = {Classification of oncology treatment responses from radiology reports
with supervised machine learning},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f008-1.4640715/f008-1.4640716/881-1.4641119/677-1.4641116},
timestamp = {Wed, 17 Apr 2024 11:46:45 +0200},
biburl = {https://dblp.org/rec/conf/amia/MottinGJAGKEWGS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/GoldmanMZKLTGRE22,
author = {Jean{-}Philippe Goldman and
Luc Mottin and
Jamil Zaghir and
Daniel Keszthelyi and
Belinda Lokaj and
Hugues Turb{\'{e}} and
Julien Gobeill and
Patrick Ruch and
Julien Ehrsam and
Christian Lovis},
editor = {Brigitte S{\'{e}}roussi and
Patrick Weber and
Ferdinand Dhombres and
Cyril Grouin and
Jan{-}David Liebe and
Sylvia Pelayo and
Andrea Pinna and
Bastien Rance and
Lucia Sacchi and
Adrien Ugon and
Arriel Benis and
Parisis Gallos},
title = {Classification of Oncology Treatment Responses from French Radiology
Reports with Supervised Machine Learning},
booktitle = {Challenges of Trustable {AI} and Added-Value on Health - Proceedings
of {MIE} 2022, Medical Informatics Europe, Nice, France, May 27-30,
2022},
series = {Studies in Health Technology and Informatics},
volume = {294},
pages = {849--853},
publisher = {{IOS} Press},
year = {2022},
url = {https://doi.org/10.3233/SHTI220605},
doi = {10.3233/SHTI220605},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/mie/GoldmanMZKLTGRE22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/CaucheteurPMMGR21,
author = {D{\'{e}}borah Caucheteur and
Emilie Pasche and
Luc Mottin and
Ana{\"{\i}}s Mottaz and
Julien Gobeill and
Patrick Ruch},
editor = {Ian Soboroff and
Angela Ellis},
title = {{SIB} Text Mining at {TREC} Clinical Trials 2021},
booktitle = {Proceedings of the Thirtieth Text REtrieval Conference, {TREC} 2021,
online, November 15-19, 2021},
series = {{NIST} Special Publication},
volume = {500-335},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2021},
url = {https://trec.nist.gov/pubs/trec30/papers/BITEM-CT.pdf},
timestamp = {Mon, 28 Aug 2023 17:23:07 +0200},
biburl = {https://dblp.org/rec/conf/trec/CaucheteurPMMGR21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/TeodoroKNPGAR20,
author = {Douglas Teodoro and
Julien Knafou and
Nona Naderi and
Emilie Pasche and
Julien Gobeill and
Cecilia N. Arighi and
Patrick Ruch},
title = {{UPCLASS:} a deep learning-based classifier for UniProtKB entry publications},
journal = {Database J. Biol. Databases Curation},
volume = {2020},
year = {2020},
url = {https://doi.org/10.1093/database/baaa026},
doi = {10.1093/DATABASE/BAAA026},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/TeodoroKNPGAR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HatosHMPAFBBBCC20,
author = {Andr{\'{a}}s Hatos and
Borb{\'{a}}la Hajdu{-}Solt{\'{e}}sz and
Alexander Miguel Monzon and
Nicolas Palopoli and
Luc{\'{\i}}a {\'{A}}lvarez and
Burcu Ayka{\c{c}} Fas and
Claudio Bassot and
Guillermo I. Ben{\'{\i}}tez and
Martina Bevilacqua and
Anastasia Chasapi and
Luc{\'{\i}}a B. Chemes and
Norman E. Davey and
Radoslav Davidovic and
A. Keith Dunker and
Arne Elofsson and
Julien Gobeill and
Nicol{\'{a}}s S. Gonz{\'{a}}lez Foutel and
Govindarajan Sudha and
Mainak Guharoy and
Tam{\'{a}}s Horv{\'{a}}th and
Valentin Iglesias and
Andrey V. Kajava and
Orsolya P. Kov{\'{a}}cs and
John Lamb and
Matteo Lambrughi and
Tamas Lazar and
Jeremy Y. Leclercq and
Emanuela Leonardi and
Sandra Macedo{-}Ribeiro and
Mauricio Macossay{-}Castillo and
Emiliano Maiani and
Jos{\'{e}} A. Manso and
Cristina Marino Buslje and
Elizabeth Mart{\'{\i}}nez{-}P{\'{e}}rez and
B{\'{a}}lint M{\'{e}}sz{\'{a}}ros and
Ivan Micetic and
Giovanni Minervini and
Nikoletta Murvai and
Marco Necci and
Christos A. Ouzounis and
M{\'{a}}ty{\'{a}}s Pajkos and
Lisanna Paladin and
Rita Pancsa and
Elena Papaleo and
Gustavo D. Parisi and
Emilie Pasche and
Pedro J. Barbosa Pereira and
Vasilis J. Promponas and
Jordi Pujols and
Federica Quaglia and
Patrick Ruch and
Marco Salvatore and
{\'{E}}va Sch{\'{a}}d and
Be{\'{a}}ta Szab{\'{o}} and
Tam{\'{a}}s Szaniszl{\'{o}} and
Stella Tamana and
{\'{A}}gnes Tantos and
Nevena Veljkovic and
Salvador Ventura and
Wim F. Vranken and
Zsuzsanna Doszt{\'{a}}nyi and
Peter Tompa and
Silvio C. E. Tosatto and
Damiano Piovesan},
title = {DisProt: intrinsic protein disorder annotation in 2020},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D269--D276},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz975},
doi = {10.1093/NAR/GKZ975},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HatosHMPAFBBBCC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GobeillCMMPR20,
author = {Julien Gobeill and
D{\'{e}}borah Caucheteur and
Pierre{-}Andr{\'{e}} Michel and
Luc Mottin and
Emilie Pasche and
Patrick Ruch},
title = {{SIB} Literature Services: RESTful customizable search engines in
biomedical literature, enriched with automatically mapped biomedical
concepts},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Webserver-Issue},
pages = {W12--W16},
year = {2020},
url = {https://doi.org/10.1093/nar/gkaa328},
doi = {10.1093/NAR/GKAA328},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GobeillCMMPR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/GobeillRM20,
author = {Julien Gobeill and
Patrick Ruch and
Rodolphe Meyer},
editor = {Louise Bilenberg Pape{-}Haugaard and
Christian Lovis and
Inge Cort Madsen and
Patrick Weber and
Per Hostrup Nielsen and
Philip Scott},
title = {Machine Learning for Automatic Encoding of French Electronic Medical
Records: Is More Data Better?},
booktitle = {Digital Personalized Health and Medicine - Proceedings of {MIE} 2020,
Medical Informatics Europe, Geneva, Switzerland, April 28 - May 1,
2020},
series = {Studies in Health Technology and Informatics},
volume = {270},
pages = {312--316},
publisher = {{IOS} Press},
year = {2020},
url = {https://doi.org/10.3233/SHTI200173},
doi = {10.3233/SHTI200173},
timestamp = {Thu, 04 Apr 2024 17:06:52 +0200},
biburl = {https://dblp.org/rec/conf/mie/GobeillRM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/CaucheteurGMPMM20,
author = {D{\'{e}}borah Caucheteur and
Julien Gobeill and
Ana{\"{\i}}s Mottaz and
Emilie Pasche and
Pierre{-}Andr{\'{e}} Michel and
Luc Mottin and
Daniel J. Stekhoven and
Val{\'{e}}rie Barbi{\'{e}} and
Patrick Ruch},
editor = {Louise Bilenberg Pape{-}Haugaard and
Christian Lovis and
Inge Cort Madsen and
Patrick Weber and
Per Hostrup Nielsen and
Philip Scott},
title = {Text-Mining Services of the Swiss Variant Interpretation Platform
for Oncology},
booktitle = {Digital Personalized Health and Medicine - Proceedings of {MIE} 2020,
Medical Informatics Europe, Geneva, Switzerland, April 28 - May 1,
2020},
series = {Studies in Health Technology and Informatics},
volume = {270},
pages = {884--888},
publisher = {{IOS} Press},
year = {2020},
url = {https://doi.org/10.3233/SHTI200288},
doi = {10.3233/SHTI200288},
timestamp = {Sun, 25 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/mie/CaucheteurGMPMM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/PascheCMMGR20,
author = {Emilie Pasche and
D{\'{e}}borah Caucheteur and
Luc Mottin and
Ana{\"{\i}}s Mottaz and
Julien Gobeill and
Patrick Ruch},
editor = {Ellen M. Voorhees and
Angela Ellis},
title = {{SIB} Text Mining at {TREC} Precision Medicine 2020},
booktitle = {Proceedings of the Twenty-Ninth Text REtrieval Conference, {TREC}
2020, Virtual Event [Gaithersburg, Maryland, USA], November 16-20,
2020},
series = {{NIST} Special Publication},
volume = {1266},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2020},
url = {https://trec.nist.gov/pubs/trec29/papers/BITEM.PM.pdf},
timestamp = {Wed, 07 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/trec/PascheCMMGR20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cicling/GobeillPR19,
author = {Julien Gobeill and
Emilie Pasche and
Patrick Ruch},
editor = {Alexander F. Gelbukh},
title = {Retrieving the Evidence of a Free Text Annotation in a Scientific
Article: {A} Data Free Approach},
booktitle = {Computational Linguistics and Intelligent Text Processing - 20th International
Conference, CICLing 2019, La Rochelle, France, April 7-13, 2019, Revised
Selected Papers, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {13451},
pages = {233--246},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-031-24337-0\_17},
doi = {10.1007/978-3-031-24337-0\_17},
timestamp = {Tue, 28 Feb 2023 16:50:33 +0100},
biburl = {https://dblp.org/rec/conf/cicling/GobeillPR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/NaderiGTPR19,
author = {Nona Naderi and
Julien Gobeill and
Douglas Teodoro and
Emilie Pasche and
Patrick Ruch},
editor = {Linda Cappellato and
Nicola Ferro and
David E. Losada and
Henning M{\"{u}}ller},
title = {A Baseline Approach for Early Detection of Signs of Anorexia and Self-harm
in Reddit Posts},
booktitle = {Working Notes of {CLEF} 2019 - Conference and Labs of the Evaluation
Forum, Lugano, Switzerland, September 9-12, 2019},
series = {{CEUR} Workshop Proceedings},
volume = {2380},
publisher = {CEUR-WS.org},
year = {2019},
url = {https://ceur-ws.org/Vol-2380/paper\_111.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:41 +0100},
biburl = {https://dblp.org/rec/conf/clef/NaderiGTPR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/CaucheteurPGMMR19,
author = {D{\'{e}}borah Caucheteur and
Emilie Pasche and
Julien Gobeill and
Ana{\"{\i}}s Mottaz and
Luc Mottin and
Patrick Ruch},
editor = {Ellen M. Voorhees and
Angela Ellis},
title = {Designing retrieval models to contrast precision-driven ad hoc search
vs. recall-driven treatment extraction in Precision Medicine},
booktitle = {Proceedings of the Twenty-Eighth Text REtrieval Conference, {TREC}
2019, Gaithersburg, Maryland, USA, November 13-15, 2019},
series = {{NIST} Special Publication},
volume = {1250},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2019},
url = {https://trec.nist.gov/pubs/trec28/papers/BITEM\_PM.PM.pdf},
timestamp = {Wed, 03 Feb 2021 08:31:24 +0100},
biburl = {https://dblp.org/rec/conf/trec/CaucheteurPGMMR19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GobeillGDMKHWLR18,
author = {Julien Gobeill and
Pascale Gaudet and
Daniel Dopp and
Adam Morrone and
Indika Kahanda and
Yi{-}Yu Hsu and
Chih{-}Hsuan Wei and
Zhiyong Lu and
Patrick Ruch},
title = {Overview of the BioCreative {VI} text-mining services for Kinome Curation
Track},
journal = {Database J. Biol. Databases Curation},
volume = {2018},
pages = {bay104},
year = {2018},
url = {https://doi.org/10.1093/database/bay104},
doi = {10.1093/DATABASE/BAY104},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GobeillGDMKHWLR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/BritanCHMPGLGTM18,
author = {Aurore Britan and
Isabelle Cusin and
Val{\'{e}}rie Hinard and
Luc Mottin and
Emilie Pasche and
Julien Gobeill and
Valentine Rech de Laval and
Anne Gleizes and
Daniel Dinis Teixeira and
Pierre{-}Andr{\'{e}} Michel and
Patrick Ruch and
Pascale Gaudet},
title = {Accelerating annotation of articles via automated approaches: evaluation
of the neXtA5 curation-support tool by neXtProt},
journal = {Database J. Biol. Databases Curation},
volume = {2018},
pages = {bay129},
year = {2018},
url = {https://doi.org/10.1093/database/bay129},
doi = {10.1093/DATABASE/BAY129},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/BritanCHMPGLGTM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/GobeillR18,
author = {Julien Gobeill and
Patrick Ruch},
editor = {Linda Cappellato and
Nicola Ferro and
Jian{-}Yun Nie and
Laure Soulier},
title = {Instance-based Learning for {ICD10} Categorization},
booktitle = {Working Notes of {CLEF} 2018 - Conference and Labs of the Evaluation
Forum, Avignon, France, September 10-14, 2018},
series = {{CEUR} Workshop Proceedings},
volume = {2125},
publisher = {CEUR-WS.org},
year = {2018},
url = {https://ceur-ws.org/Vol-2125/paper\_149.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:36 +0100},
biburl = {https://dblp.org/rec/conf/clef/GobeillR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MottinPGLGMBGR17,
author = {Luc Mottin and
Emilie Pasche and
Julien Gobeill and
Valentine Rech de Laval and
Anne Gleizes and
Pierre{-}Andr{\'{e}} Michel and
Amos Bairoch and
Pascale Gaudet and
Patrick Ruch},
title = {Triage by ranking to support the curation of protein interactions},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax040},
year = {2017},
url = {https://doi.org/10.1093/database/bax040},
doi = {10.1093/DATABASE/BAX040},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/MottinPGLGMBGR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/TeodoroMGGVR17,
author = {Douglas Teodoro and
Luc Mottin and
Julien Gobeill and
Arnaud Gaudinat and
Th{\'{e}}r{\`{e}}se Vachon and
Patrick Ruch},
title = {Improving average ranking precision in user searches for biomedical
research datasets},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax083},
year = {2017},
url = {https://doi.org/10.1093/database/bax083},
doi = {10.1093/DATABASE/BAX083},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/TeodoroMGGVR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/PascheGMMTRR17,
author = {Emilie Pasche and
Julien Gobeill and
Luc Mottin and
Ana{\"{\i}}s Mottaz and
Douglas Teodoro and
Paul Van Rijen and
Patrick Ruch},
editor = {Ellen M. Voorhees and
Angela Ellis},
title = {Customizing a Variant Annotation-Support Tool: an Inquiry into Probability
Ranking Principles for {TREC} Precision Medicine},
booktitle = {Proceedings of The Twenty-Sixth Text REtrieval Conference, {TREC}
2017, Gaithersburg, Maryland, USA, November 15-17, 2017},
series = {{NIST} Special Publication},
volume = {500-324},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2017},
url = {https://trec.nist.gov/pubs/trec26/papers/BiTeM-PM.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/PascheGMMTRR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1708-08669,
author = {Arnaud Gaudinat and
Jonas Beausire and
Megan Fuss and
Elisa Banfi and
Julien Gobeill and
Patrick Ruch},
title = {Global picture of {OAI-PMH} repositories through the analysis of 6
key open archive meta-catalogs},
journal = {CoRR},
volume = {abs/1708.08669},
year = {2017},
url = {http://arxiv.org/abs/1708.08669},
eprinttype = {arXiv},
eprint = {1708.08669},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1708-08669.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1709-03061,
author = {Douglas Teodoro and
Luc Mottin and
Julien Gobeill and
Arnaud Gaudinat and
Th{\'{e}}r{\`{e}}se Vachon and
Patrick Ruch},
title = {Improving average ranking precision in user searches for biomedical
research datasets},
journal = {CoRR},
volume = {abs/1709.03061},
year = {2017},
url = {http://arxiv.org/abs/1709.03061},
eprinttype = {arXiv},
eprint = {1709.03061},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1709-03061.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MottinGPMCGR16,
author = {Luc Mottin and
Julien Gobeill and
Emilie Pasche and
Pierre{-}Andr{\'{e}} Michel and
Isabelle Cusin and
Pascale Gaudet and
Patrick Ruch},
title = {neXtA\({}_{\mbox{5}}\): accelerating annotation of articles via automated
approaches in neXtProt},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw098},
doi = {10.1093/DATABASE/BAW098},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/MottinGPMCGR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/MottinGMPGR16,
author = {Luc Mottin and
Julien Gobeill and
Ana{\"{\i}}s Mottaz and
Emilie Pasche and
Arnaud Gaudinat and
Patrick Ruch},
editor = {Krisztian Balog and
Linda Cappellato and
Nicola Ferro and
Craig Macdonald},
title = {BiTeM at {CLEF} eHealth Evaluation Lab 2016 Task 2: Multilingual Information
Extraction},
booktitle = {Working Notes of {CLEF} 2016 - Conference and Labs of the Evaluation
forum, {\'{E}}vora, Portugal, 5-8 September, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1609},
pages = {94--102},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1609/16090094.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:40 +0100},
biburl = {https://dblp.org/rec/conf/clef/MottinGMPGR16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GobeillGPVGBR15,
author = {Julien Gobeill and
Arnaud Gaudinat and
Emilie Pasche and
Dina Vishnyakova and
Pascale Gaudet and
Amos Bairoch and
Patrick Ruch},
title = {Deep Question Answering for protein annotation},
journal = {Database J. Biol. Databases Curation},
volume = {2015},
year = {2015},
url = {https://doi.org/10.1093/database/bav081},
doi = {10.1093/DATABASE/BAV081},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/GobeillGPVGBR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/GobeillGR15,
author = {Julien Gobeill and
Arnaud Gaudinat and
Patrick Ruch},
editor = {Josiane Mothe and
Jacques Savoy and
Jaap Kamps and
Karen Pinel{-}Sauvagnat and
Gareth J. F. Jones and
Eric SanJuan and
Linda Cappellato and
Nicola Ferro},
title = {Instance-Based Learning for Tweet Monitoring and Categorization},
booktitle = {Experimental {IR} Meets Multilinguality, Multimodality, and Interaction
- 6th International Conference of the {CLEF} Association, {CLEF} 2015,
Toulouse, France, September 8-11, 2015, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {9283},
pages = {235--240},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-24027-5\_22},
doi = {10.1007/978-3-319-24027-5\_22},
timestamp = {Sat, 19 Oct 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/clef/GobeillGR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/GobeillGR15,
author = {Julien Gobeill and
Arnaud Gaudinat and
Patrick Ruch},
editor = {Ellen M. Voorhees and
Angela Ellis},
title = {Exploiting incoming and outgoing citations for improving Information
Retrieval in the {TREC} 2015 Clinical Decision Support Track},
booktitle = {Proceedings of The Twenty-Fourth Text REtrieval Conference, {TREC}
2015, Gaithersburg, Maryland, USA, November 17-20, 2015},
series = {{NIST} Special Publication},
volume = {500-319},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2015},
url = {http://trec.nist.gov/pubs/trec24/papers/SIBtex-CL.pdf},
timestamp = {Wed, 03 Feb 2021 08:31:23 +0100},
biburl = {https://dblp.org/rec/conf/trec/GobeillGR15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GobeillPVR14,
author = {Julien Gobeill and
Emilie Pasche and
Dina Vishnyakova and
Patrick Ruch},
title = {Closing the loop: from paper to protein annotation using supervised
Gene Ontology classification},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau088},
doi = {10.1093/DATABASE/BAU088},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/GobeillPVR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MaoALAMHTSLWGRLKCCYLZLYEGCDL14,
author = {Yuqing Mao and
Kimberly Van Auken and
Donghui Li and
Cecilia N. Arighi and
Peter McQuilton and
G. Thomas Hayman and
Susan Tweedie and
Mary L. Schaeffer and
Stanley J. F. Laulederkind and
Shur{-}Jen Wang and
Julien Gobeill and
Patrick Ruch and
Anh Tuan Luu and
Jung{-}Jae Kim and
Jung{-}Hsien Chiang and
Yu{-}De Chen and
Chia{-}Jung Yang and
Hongfang Liu and
Dongqing Zhu and
Yanpeng Li and
Hong Yu and
Ehsan Emadzadeh and
Graciela Gonzalez and
Jian{-}Ming Chen and
Hong{-}Jie Dai and
Zhiyong Lu},
title = {Overview of the gene ontology task at BioCreative {IV}},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau086},
doi = {10.1093/DATABASE/BAU086},
timestamp = {Thu, 25 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/MaoALAMHTSLWGRLKCCYLZLYEGCDL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PascheGKOVLR14,
author = {Emilie Pasche and
Julien Gobeill and
Olivier Kreim and
Fatma Oezdemir{-}Zaech and
Th{\'{e}}r{\`{e}}se Vachon and
Christian Lovis and
Patrick Ruch},
title = {Development and tuning of an original search engine for patent libraries
in medicinal chemistry},
journal = {{BMC} Bioinform.},
volume = {15},
number = {{S-1}},
pages = {S15},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-S1-S15},
doi = {10.1186/1471-2105-15-S1-S15},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PascheGKOVLR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/GobeillGR14,
author = {Julien Gobeill and
Arnaud Gaudinat and
Patrick Ruch},
editor = {Linda Cappellato and
Nicola Ferro and
Martin Halvey and
Wessel Kraaij},
title = {Instance-based Learning for Tweet Categorization in {CLEF} RepLab
2014},
booktitle = {Working Notes for {CLEF} 2014 Conference, Sheffield, UK, September
15-18, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1180},
pages = {1491--1499},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1180/CLEF2014wn-Rep-GobeilEt2014.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:41 +0100},
biburl = {https://dblp.org/rec/conf/clef/GobeillGR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/VishnyakovaGOKVCHMR14,
author = {Dina Vishnyakova and
Julien Gobeill and
Fatma Oezdemir{-}Zaech and
Olivier Kreim and
Th{\'{e}}r{\`{e}}se Vachon and
Thierry Clad{\'{e}} and
Xavier Haenning and
Dmitri Mikhailov and
Patrick Ruch},
editor = {Christian Lovis and
Brigitte S{\'{e}}roussi and
Arie Hasman and
Louise Pape{-}Haugaard and
Osman Saka and
Stig Kj{\ae}r Andersen},
title = {Electronic Processing of Informed Consents in a Global Pharmaceutical
Company Environment},
booktitle = {e-Health - For Continuity of Care - Proceedings of MIE2014, the 25th
European Medical Informatics Conference, Istanbul, Turkey, August
31 - September 3, 2014},
series = {Studies in Health Technology and Informatics},
volume = {205},
pages = {995--999},
publisher = {{IOS} Press},
year = {2014},
url = {https://doi.org/10.3233/978-1-61499-432-9-995},
doi = {10.3233/978-1-61499-432-9-995},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mie/VishnyakovaGOKVCHMR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/GobeillGPR14,
author = {Julien Gobeill and
Arnaud Gaudinat and
Emilie Pasche and
Patrick Ruch},
editor = {Ellen M. Voorhees and
Angela Ellis},
title = {Full-texts representation with Medical Subject Headings, and co-citations
network rerank- ing strategies for {TREC} 2014 Clinical Decision Support
Track},
booktitle = {Proceedings of The Twenty-Third Text REtrieval Conference, {TREC}
2014, Gaithersburg, Maryland, USA, November 19-21, 2014},
series = {{NIST} Special Publication},
volume = {500-308},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2014},
url = {http://trec.nist.gov/pubs/trec23/papers/pro-BiTeM\_SIBtex\_clinical.pdf},
timestamp = {Wed, 03 Feb 2021 08:31:24 +0100},
biburl = {https://dblp.org/rec/conf/trec/GobeillGPR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GobeillPVR13,
author = {Julien Gobeill and
Emilie Pasche and
Dina Vishnyakova and
Patrick Ruch},
title = {Managing the data deluge: data-driven {GO} category assignment improves
while complexity of functional annotation increases},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013},
url = {https://doi.org/10.1093/database/bat041},
doi = {10.1093/DATABASE/BAT041},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/GobeillPVR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VeutheyBGRMBX13,
author = {Anne{-}Lise Veuthey and
Alan J. Bridge and
Julien Gobeill and
Patrick Ruch and
Johanna R. McEntyre and
Lydie Bougueleret and
Ioannis Xenarios},
title = {Application of text-mining for updating protein post-translational
modification annotation in UniProtKB},
journal = {{BMC} Bioinform.},
volume = {14},
pages = {104},
year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-104},
doi = {10.1186/1471-2105-14-104},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/VeutheyBGRMBX13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/VishnyakovaGR13,
author = {Dina Vishnyakova and
Julien Gobeill and
Patrick Ruch},
editor = {Pamela Forner and
Roberto Navigli and
Dan Tufis and
Nicola Ferro},
title = {Using a Question-Answering Approach in Machine Reading Task of Biomedical
Texts about the Alzheimer Disease},
booktitle = {Working Notes for {CLEF} 2013 Conference , Valencia, Spain, September
23-26, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1179},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1179/CLEF2013wn-QA4MRE-VishnyakovaEt2013.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:37 +0100},
biburl = {https://dblp.org/rec/conf/clef/VishnyakovaGR13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/PascheGVRL13,
author = {Emilie Pasche and
Julien Gobeill and
Dina Vishnyakova and
Patrick Ruch and
Christian Lovis},
editor = {Christoph Ulrich Lehmann and
Elske Ammenwerth and
Christian N{\o}hr},
title = {Use of Controlled Vocabularies to Improve Biomedical Information Retrieval
Tasks},
booktitle = {{MEDINFO} 2013 - Proceedings of the 14th World Congress on Medical
and Health Informatics, 20-13 August 2013, Copenhagen, Denmark},
series = {Studies in Health Technology and Informatics},
volume = {192},
pages = {1068},
publisher = {{IOS} Press},
year = {2013},
url = {https://doi.org/10.3233/978-1-61499-289-9-1068},
doi = {10.3233/978-1-61499-289-9-1068},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/PascheGVRL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/AswaniBB13,
author = {Niraj Aswani and
Thomas Beckers and
Erich Birngruber and
C{\'{e}}lia Boyer and
Andreas Burner and
Jakub Bystron and
Khalid Choukri and
Sarah Cruchet and
Hamish Cunningham and
Jan Dedek and
Ljiljana Dolamic and
Ren{\'{e}} Donner and
Sebastian Dungs and
Ivan Eggel and
Antonio Foncubierta{-}Rodr{\'{\i}}guez and
Norbert Fuhr and
Adam Funk and
Alba Garcia Seco de Herrera and
Arnaud Gaudinat and
Georgi Georgiev and
Julien Gobeill and
Lorraine Goeuriot and
Paz Gomez and
Robert Mark Greenwood and
Manfred Gschwandtner and
Allan Hanbury and
Jan Hajic and
Jaroslava Hlav{\'{a}}cov{\'{a}} and
Markus Holzer and
Gareth J. F. Jones and
Blanca Jordan and
Matthias Jordan and
Klemens Kaderk and
Franz Kainberger and
Liadh Kelly and
Sascha Kriewel and
Marlene Kritz and
Georg Langs and
Nolan Lawson and
Dimitrios Markonis and
Iv{\'{a}}n Mart{\'{\i}}nez and
Vassil Momtchev and
Alexandre Masselot and
H{\'{e}}l{\`{e}}ne Mazo and
Henning M{\"{u}}ller and
Jo{\~{a}}o R. M. Palotti and
Pavel Pecina and
Konstantin Pentchev and
Deyan Peychev and
Natalia Pletneva and
Diana Pottecher and
Angus Roberts and
Patrick Ruch and
Alexander Sachs and
Matthias Samwald and
Priscille Schneller and
Veronika Stefanov and
Miguel Angel Tinte and
Zdenka Uresov{\'{a}} and
Alejandro Vargas and
Dina Vishnyakova},
editor = {Christoph Ulrich Lehmann and
Elske Ammenwerth and
Christian N{\o}hr},
title = {Khresmoi - Multilingual Semantic Search of Medical Text and Images},
booktitle = {{MEDINFO} 2013 - Proceedings of the 14th World Congress on Medical
and Health Informatics, 20-13 August 2013, Copenhagen, Denmark},
series = {Studies in Health Technology and Informatics},
volume = {192},
pages = {1266},
publisher = {{IOS} Press},
year = {2013},
timestamp = {Tue, 16 Nov 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/AswaniBB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/GobeillR12,
author = {Julien Gobeill and
Patrick Ruch},
editor = {Pamela Forner and
Jussi Karlgren and
Christa Womser{-}Hacker},
title = {BiTeM Site Report for the Claims to Passage Task in {CLEF-IP} 2012},
booktitle = {{CLEF} 2012 Evaluation Labs and Workshop, Online Working Notes, Rome,
Italy, September 17-20, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {1178},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-1178/CLEF2012wn-CLEFIP-GobeillEt2012.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:42 +0100},
biburl = {https://dblp.org/rec/conf/clef/GobeillR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/efmi-stc/PascheGTGVLR12,
author = {Emilie Pasche and
Julien Gobeill and
Douglas Teodoro and
Arnaud Gaudinat and
Dina Vishnyakova and
Christian Lovis and
Patrick Ruch},
editor = {Bernd Blobel and
Rolf Engelbrecht and
Michael A. Shifrin},
title = {A User-Friendly Tool for Medical-Related Patent Retrieval},
booktitle = {Large Scale Projects in eHealth - Partnership in Modernization: Proceedings
of the {EFMI} Special Topic Conference, {EFMI-STC} 2012, Moscow, Russia,
April 18-20, 2012},
series = {Studies in Health Technology and Informatics},
volume = {174},
pages = {121--125},
publisher = {{IOS} Press},
year = {2012},
url = {https://doi.org/10.3233/978-1-61499-052-9-121},
doi = {10.3233/978-1-61499-052-9-121},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/efmi-stc/PascheGTGVLR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mir/PascheGTGVLR12,
author = {Emilie Pasche and
Julien Gobeill and
Douglas Teodoro and
Arnaud Gaudinat and
Dina Vishnyakova and
Christian Lovis and
Patrick Ruch},
editor = {John Mantas and
Stig Kj{\ae}r Andersen and
Maria Christina Mazzoleni and
Bernd Blobel and
Silvana Quaglini and
Anne Moen},
title = {An advanced search engine for patent analytics in medicinal chemistry},
booktitle = {Quality of Life through Quality of Information - Proceedings of MIE2012,
The XXIVth International Congress of the European Federation for Medical
Informatics, Pisa, Italy, August 26-29, 2012},
series = {Studies in Health Technology and Informatics},
volume = {180},
pages = {204--209},
publisher = {{IOS} Press},
year = {2012},
url = {https://doi.org/10.3233/978-1-61499-101-4-204},
doi = {10.3233/978-1-61499-101-4-204},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mir/PascheGTGVLR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mir/VishnyakovaPGGLR12,
author = {Dina Vishnyakova and
Emilie Pasche and
Julien Gobeill and
Arnaud Gaudinat and
Christian Lovis and
Patrick Ruch},
editor = {John Mantas and
Stig Kj{\ae}r Andersen and
Maria Christina Mazzoleni and
Bernd Blobel and
Silvana Quaglini and
Anne Moen},
title = {Classification and Prioritization of Biomedical Literature for the
Comparative Toxicogenomics Database},
booktitle = {Quality of Life through Quality of Information - Proceedings of MIE2012,
The XXIVth International Congress of the European Federation for Medical
Informatics, Pisa, Italy, August 26-29, 2012},
series = {Studies in Health Technology and Informatics},
volume = {180},
pages = {210--214},
publisher = {{IOS} Press},
year = {2012},
url = {https://doi.org/10.3233/978-1-61499-101-4-210},
doi = {10.3233/978-1-61499-101-4-210},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mir/VishnyakovaPGGLR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/PascheGTVGRL11,
author = {Emilie Pasche and
Julien Gobeill and
Douglas Teodoro and
Dina Vishnyakova and
Arnaud Gaudinat and
Patrick Ruch and
Christian Lovis},
editor = {Anne Moen and
Stig Kj{\ae}r Andersen and
Jos Aarts and
Petter Hurlen},
title = {Using Multimodal Mining to Drive Clinical Guidelines Development},
booktitle = {User Centered Networked Health Care - Proceedings of {MIE} 2011 -
The XXIIIth International Congress of the European Federation for
Medical Informatics, Oslo, Norway, August 28-31, 2011},
series = {Studies in Health Technology and Informatics},
volume = {169},
pages = {477--481},
publisher = {{IOS} Press},
year = {2011},
url = {https://doi.org/10.3233/978-1-60750-806-9-477},
doi = {10.3233/978-1-60750-806-9-477},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mie/PascheGTVGRL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/GobeillGRPTV11,
author = {Julien Gobeill and
Arnaud Gaudinat and
Patrick Ruch and
Emilie Pasche and
Douglas Teodoro and
Dina Vishnyakova},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {BiTeM Group Report for {TREC} Chemical {IR} Track 2011},
booktitle = {Proceedings of The Twentieth Text REtrieval Conference, {TREC} 2011,
Gaithersburg, Maryland, USA, November 15-18, 2011},
series = {{NIST} Special Publication},
volume = {500-296},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2011},
url = {http://trec.nist.gov/pubs/trec20/papers/BiTeM.chem.pdf},
timestamp = {Wed, 03 Feb 2021 08:31:23 +0100},
biburl = {https://dblp.org/rec/conf/trec/GobeillGRPTV11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/GobeillGRPTV11a,
author = {Julien Gobeill and
Arnaud Gaudinat and
Patrick Ruch and
Emilie Pasche and
Douglas Teodoro and
Dina Vishnyakova},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {BiTeM Group Report for {TREC} Medical Records Track 2011},
booktitle = {Proceedings of The Twentieth Text REtrieval Conference, {TREC} 2011,
Gaithersburg, Maryland, USA, November 15-18, 2011},
series = {{NIST} Special Publication},
volume = {500-296},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2011},
url = {http://trec.nist.gov/pubs/trec20/papers/BiTeM.medical.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/trec/GobeillGRPTV11a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/TeodoroGPVRL10,
author = {Douglas Teodoro and
Julien Gobeill and
Emilie Pasche and
Dina Vishnyakova and
Patrick Ruch and
Christian Lovis},
editor = {Martin Braschler and
Donna Harman and
Emanuele Pianta},
title = {Automatic Prior Art Searching and Patent Encoding at {CLEF-IP} '10},
booktitle = {{CLEF} 2010 LABs and Workshops, Notebook Papers, 22-23 September 2010,
Padua, Italy},
series = {{CEUR} Workshop Proceedings},
volume = {1176},
publisher = {CEUR-WS.org},
year = {2010},
url = {https://ceur-ws.org/Vol-1176/CLEF2010wn-CLEF-IP-TeodoroEt2010.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:37 +0100},
biburl = {https://dblp.org/rec/conf/clef/TeodoroGPVRL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ntcir/TeodoroPVGRL10,
author = {Douglas Teodoro and
Emilie Pasche and
Dina Vishnyakova and
Julien Gobeill and
Patrick Ruch and
Christian Lovis},
editor = {Noriko Kando and
Kazuaki Kishida and
Miho Sugimoto},
title = {Automatic {IPC} Encoding and Novelty Tracking for Effective Patent
Mining},
booktitle = {Proceedings of the 8th {NTCIR} Workshop Meeting on Evaluation of Information
Access Technologies: Information Retrieval, Question Answering and
Cross-Lingual Information Access, NTCIR-8, National Center of Sciences,
Tokyo, Japan, June 15-18, 2010},
pages = {309--317},
publisher = {National Institute of Informatics {(NII)}},
year = {2010},
url = {http://research.nii.ac.jp/ntcir/workshop/OnlineProceedings8/NTCIR/03-NTCIR8-PATMN-TeodoroD.pdf},
timestamp = {Wed, 01 Jun 2022 17:01:01 +0200},
biburl = {https://dblp.org/rec/conf/ntcir/TeodoroPVGRL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/GobeillGRPTV10,
author = {Julien Gobeill and
Arnaud Gaudinat and
Patrick Ruch and
Emilie Pasche and
Douglas Teodoro and
Dina Vishnyakova},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {BiTeM site Report for {TREC} Chemistry 2010: Impact of Citations Feeback
for Patent Prior Art Search and Chemical Compounds Expansion for Ad
Hoc Retrieval},
booktitle = {Proceedings of The Nineteenth Text REtrieval Conference, {TREC} 2010,
Gaithersburg, Maryland, USA, November 16-19, 2010},
series = {{NIST} Special Publication},
volume = {500-294},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2010},
url = {http://trec.nist.gov/pubs/trec19/papers/univ.geneva.chem.rev.pdf},
timestamp = {Wed, 03 Feb 2021 08:31:24 +0100},
biburl = {https://dblp.org/rec/conf/trec/GobeillGRPTV10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/HumphreyNBGRD09,
author = {Susanne M. Humphrey and
Aur{\'{e}}lie N{\'{e}}v{\'{e}}ol and
Allen C. Browne and
Julien Gobeill and
Patrick Ruch and
St{\'{e}}fan Jacques Darmoni},
title = {Comparing a rule-based versus statistical system for automatic categorization
of {MEDLINE} documents according to biomedical specialty},
journal = {J. Assoc. Inf. Sci. Technol.},
volume = {60},
number = {12},
pages = {2530--2539},
year = {2009},
url = {https://doi.org/10.1002/asi.21170},
doi = {10.1002/ASI.21170},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jasis/HumphreyNBGRD09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PascheTGRL09,
author = {Emilie Pasche and
Douglas Teodoro and
Julien Gobeill and
Patrick Ruch and
Christian Lovis},
title = {QA-driven Guidelines Generation for Bacteriotherapy},
booktitle = {{AMIA} 2009, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2009},
publisher = {{AMIA}},
year = {2009},
url = {https://knowledge.amia.org/amia-55142-a2009a-1.626575/t-001-1.627318/f-001-1.627319/a-098-1.627458/a-099-1.627455},
timestamp = {Wed, 17 Apr 2024 11:48:10 +0200},
biburl = {https://dblp.org/rec/conf/amia/PascheTGRL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/GobeillPTR09,
author = {Julien Gobeill and
Emilie Pasche and
Douglas Teodoro and
Patrick Ruch},
editor = {Carol Peters and
Giorgio Maria Di Nunzio and
Mikko Kurimo and
Thomas Mandl and
Djamel Mostefa and
Anselmo Pe{\~{n}}as and
Giovanna Roda},
title = {Simple Pre and Post Processing Strategies for Patent Searching in
{CLEF} Intellectual Property Track 2009},
booktitle = {Multilingual Information Access Evaluation I. Text Retrieval Experiments,
10th Workshop of the Cross-Language Evaluation Forum, {CLEF} 2009,
Corfu, Greece, September 30 - October 2, 2009, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {6241},
pages = {444--451},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-15754-7\_53},
doi = {10.1007/978-3-642-15754-7\_53},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/clef/GobeillPTR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/GobeillTPR09,
author = {Julien Gobeill and
Douglas Theodoro and
Emilie Pasche and
Patrick Ruch},
editor = {Carol Peters and
Nicola Ferro},
title = {Taking Benefit of Query and Document Expansion using MeSH Descriptors
in Medical ImageCLEF 2009},
booktitle = {Working Notes for {CLEF} 2009 Workshop co-located with the 13th European
Conference on Digital Libraries {(ECDL} 2009) , Corf{\`{u}}, Greece,
September 30 - October 2, 2009},
series = {{CEUR} Workshop Proceedings},
volume = {1175},
publisher = {CEUR-WS.org},
year = {2009},
url = {https://ceur-ws.org/Vol-1175/CLEF2009wn-ImageCLEF-GobeillEt2009.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:36 +0100},
biburl = {https://dblp.org/rec/conf/clef/GobeillTPR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/GobeillTR09,
author = {Julien Gobeill and
Douglas Theodoro and
Patrick Ruch},
editor = {Carol Peters and
Nicola Ferro},
title = {Exploring a Wide Range of Simple Pre and Post Processing Strategies
for Patent Searching in {CLEF} {IP} 2009},
booktitle = {Working Notes for {CLEF} 2009 Workshop co-located with the 13th European
Conference on Digital Libraries {(ECDL} 2009) , Corf{\`{u}}, Greece,
September 30 - October 2, 2009},
series = {{CEUR} Workshop Proceedings},
volume = {1175},
publisher = {CEUR-WS.org},
year = {2009},
url = {https://ceur-ws.org/Vol-1175/CLEF2009wn-CLEFIP-GobeillEt2009.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/GobeillTR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/TeodoroCPGDRL09,
author = {Douglas Teodoro and
R{\'{e}}my Choquet and
Emilie Pasche and
Julien Gobeill and
Christel Daniel and
Patrick Ruch and
Christian Lovis},
editor = {Klaus{-}Peter Adlassnig and
Bernd Blobel and
John Mantas and
Izet Masic},
title = {Biomedical Data Management: {A} Proposal Framework},
booktitle = {Medical Informatics in a United and Healthy Europe - Proceedings of
{MIE} 2009, The XXIInd International Congress of the European Federation
for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August
30 - September 2, 2009},
series = {Studies in Health Technology and Informatics},
volume = {150},
pages = {175--179},
publisher = {{IOS} Press},
year = {2009},
url = {https://doi.org/10.3233/978-1-60750-044-5-175},
doi = {10.3233/978-1-60750-044-5-175},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mie/TeodoroCPGDRL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/PascheTGRL09,
author = {Emilie Pasche and
Douglas Teodoro and
Julien Gobeill and
Patrick Ruch and
Christian Lovis},
editor = {Klaus{-}Peter Adlassnig and
Bernd Blobel and
John Mantas and
Izet Masic},
title = {Automatic Medical Knowledge Acquisition Using Question-Answering},
booktitle = {Medical Informatics in a United and Healthy Europe - Proceedings of
{MIE} 2009, The XXIInd International Congress of the European Federation
for Medical Informatics, Sarajevo, Bosnia and Herzegovina, August
30 - September 2, 2009},
series = {Studies in Health Technology and Informatics},
volume = {150},
pages = {569--573},
publisher = {{IOS} Press},
year = {2009},
url = {https://doi.org/10.3233/978-1-60750-044-5-569},
doi = {10.3233/978-1-60750-044-5-569},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mie/PascheTGRL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/GobeillTPR09,
author = {Julien Gobeill and
Douglas Teodoro and
Emilie Pasche and
Patrick Ruch},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Report on the {TREC} 2009 Experiments: Chemical {IR} Track},
booktitle = {Proceedings of The Eighteenth Text REtrieval Conference, {TREC} 2009,
Gaithersburg, Maryland, USA, November 17-20, 2009},
series = {{NIST} Special Publication},
volume = {500-278},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2009},
url = {http://trec.nist.gov/pubs/trec18/papers/bitem.CHEM.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/GobeillTPR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/GobeillTEMVR08,
author = {Julien Gobeill and
Imad Tbahriti and
Fr{\'{e}}d{\'{e}}ric Ehrler and
Ana{\"{\i}}s Mottaz and
Anne{-}Lise Veuthey and
Patrick Ruch},
title = {Gene Ontology density estimation and discourse analysis for automatic
GeneRiF extraction},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-3}},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-S3-S9},
doi = {10.1186/1471-2105-9-S3-S9},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/GobeillTEMVR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/RuchGLG08,
author = {Patrick Ruch and
Julien Gobeill and
Christian Lovis and
Antoine Geissb{\"{u}}hler},
title = {Automatic medical encoding with {SNOMED} categories},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {8},
number = {{S-1}},
pages = {S6},
year = {2008},
url = {https://doi.org/10.1186/1472-6947-8-S1-S6},
doi = {10.1186/1472-6947-8-S1-S6},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/midm/RuchGLG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RuchGTG08,
author = {Patrick Ruch and
Julien Gobeill and
Imad Tbahriti and
Antoine Geissb{\"{u}}hler},
title = {From Episodes of Care to Diagnosis Codes: Automatic Text Categorization
for Medico-Economic Encoding},
booktitle = {{AMIA} 2008, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2008},
publisher = {{AMIA}},
year = {2008},
url = {https://knowledge.amia.org/amia-55142-a2008a-1.625176/t-001-1.626020/f-001-1.626021/a-131-1.626171/a-132-1.626168},
timestamp = {Wed, 17 Apr 2024 11:48:12 +0200},
biburl = {https://dblp.org/rec/conf/amia/RuchGTG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/GobeillR08,
author = {Julien Gobeill and
Patrick Ruch},
editor = {Carol Peters and
Nicola Ferro},
title = {First Participation of University and Hospitals of Geneva to Domain-Specific
Track in {CLEF} 2008},
booktitle = {Working Notes for {CLEF} 2008 Workshop co-located with the 12th European
Conference on Digital Libraries {(ECDL} 2008) , Aarhus, Denmark, September
17-19, 2008},
series = {{CEUR} Workshop Proceedings},
volume = {1174},
publisher = {CEUR-WS.org},
year = {2008},
url = {https://ceur-ws.org/Vol-1174/CLEF2008wn-DomainSpecific-GobeillEt2008.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:42 +0100},
biburl = {https://dblp.org/rec/conf/clef/GobeillR08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/GobeillRZ08a,
author = {Julien Gobeill and
Patrick Ruch and
Xin Zhou},
editor = {Carol Peters and
Nicola Ferro},
title = {Text-only Cross-language Image Search at Medical ImageCLEF 2008},
booktitle = {Working Notes for {CLEF} 2008 Workshop co-located with the 12th European
Conference on Digital Libraries {(ECDL} 2008) , Aarhus, Denmark, September
17-19, 2008},
series = {{CEUR} Workshop Proceedings},
volume = {1174},
publisher = {CEUR-WS.org},
year = {2008},
url = {https://ceur-ws.org/Vol-1174/CLEF2008wn-ImageCLEF-GobeillEt2008.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/GobeillRZ08a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/ZhouGM08,
author = {Xin Zhou and
Julien Gobeill and
Henning M{\"{u}}ller},
editor = {Carol Peters and
Thomas Deselaers and
Nicola Ferro and
Julio Gonzalo and
Gareth J. F. Jones and
Mikko Kurimo and
Thomas Mandl and
Anselmo Pe{\~{n}}as and
Vivien Petras},
title = {The MedGIFT Group at ImageCLEF 2008},
booktitle = {Evaluating Systems for Multilingual and Multimodal Information Access,
9th Workshop of the Cross-Language Evaluation Forum, {CLEF} 2008,
Aarhus, Denmark, September 17-19, 2008, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {5706},
pages = {712--718},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-642-04447-2\_90},
doi = {10.1007/978-3-642-04447-2\_90},
timestamp = {Tue, 01 Jun 2021 15:22:41 +0200},
biburl = {https://dblp.org/rec/conf/clef/ZhouGM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/GobeillRZ08,
author = {Julien Gobeill and
Patrick Ruch and
Xin Zhou},
editor = {Carol Peters and
Thomas Deselaers and
Nicola Ferro and
Julio Gonzalo and
Gareth J. F. Jones and
Mikko Kurimo and
Thomas Mandl and
Anselmo Pe{\~{n}}as and
Vivien Petras},
title = {Query and Document Expansion with Medical Subject Headings Terms at
Medical Imageclef 2008},
booktitle = {Evaluating Systems for Multilingual and Multimodal Information Access,
9th Workshop of the Cross-Language Evaluation Forum, {CLEF} 2008,
Aarhus, Denmark, September 17-19, 2008, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {5706},
pages = {736--743},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-642-04447-2\_95},
doi = {10.1007/978-3-642-04447-2\_95},
timestamp = {Wed, 24 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/clef/GobeillRZ08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/ZhouGM08a,
author = {Xin Zhou and
Julien Gobeill and
Henning M{\"{u}}ller},
editor = {Carol Peters and
Nicola Ferro},
title = {MedGIFT at ImageCLEF 2008},
booktitle = {Working Notes for {CLEF} 2008 Workshop co-located with the 12th European
Conference on Digital Libraries {(ECDL} 2008) , Aarhus, Denmark, September
17-19, 2008},
series = {{CEUR} Workshop Proceedings},
volume = {1174},
publisher = {CEUR-WS.org},
year = {2008},
url = {https://ceur-ws.org/Vol-1174/CLEF2008wn-ImageCLEF-ZhouEt2008a.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/ZhouGM08a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/RuchBCTGFGPRLV07,
author = {Patrick Ruch and
C{\'{e}}lia Boyer and
Christine Chichester and
Imad Tbahriti and
Antoine Geissb{\"{u}}hler and
Paul Fabry and
Julien Gobeill and
Violaine Pillet and
Dietrich Rebholz{-}Schuhmann and
Christian Lovis and
Anne{-}Lise Veuthey},
title = {Using argumentation to extract key sentences from biomedical abstracts},
journal = {Int. J. Medical Informatics},
volume = {76},
number = {2-3},
pages = {195--200},
year = {2007},
url = {https://doi.org/10.1016/j.ijmedinf.2006.05.002},
doi = {10.1016/J.IJMEDINF.2006.05.002},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/RuchBCTGFGPRLV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/ZhouGRM07,
author = {Xin Zhou and
Julien Gobeill and
Patrick Ruch and
Henning M{\"{u}}ller},
editor = {Carol Peters and
Valentin Jijkoun and
Thomas Mandl and
Henning M{\"{u}}ller and
Douglas W. Oard and
Anselmo Pe{\~{n}}as and
Vivien Petras and
Diana Santos},
title = {University and Hospitals of Geneva Participating at ImageCLEF 2007},
booktitle = {Advances in Multilingual and Multimodal Information Retrieval, 8th
Workshop of the Cross-Language Evaluation Forum, {CLEF} 2007, Budapest,
Hungary, September 19-21, 2007, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {5152},
pages = {649--656},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-85760-0\_83},
doi = {10.1007/978-3-540-85760-0\_83},
timestamp = {Wed, 24 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/clef/ZhouGRM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/ZhouGRM07a,
author = {Xin Zhou and
Julien Gobeill and
Patrick Ruch and
Henning M{\"{u}}ller},
editor = {Alessandro Nardi and
Carol Peters and
Nicola Ferro},
title = {University and Hospitals of Geneva at ImageCLEF 2007},
booktitle = {Working Notes for {CLEF} 2007 Workshop co-located with the 11th European
Conference on Digital Libraries {(ECDL} 2007), Budapest, Hungary,
September 19-21, 2007},
series = {{CEUR} Workshop Proceedings},
volume = {1173},
publisher = {CEUR-WS.org},
year = {2007},
url = {https://ceur-ws.org/Vol-1173/CLEF2007wn-ImageCLEF-ZhouEt2007.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:41 +0100},
biburl = {https://dblp.org/rec/conf/clef/ZhouGRM07a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/coria/TbahritiVRG07,
author = {Imad Tbahriti and
Anne{-}Lise Veuthey and
Patrick Ruch and
Julien Gobeill},
title = {Recherche d'information et analyse bibliographique appliqu{\'{e}}es
{\`{a}} la mise {\`{a}} jour automatique de Swiss-Prot},
booktitle = {COnf{\'{e}}rence en Recherche d'Infomations et Applications -
{CORIA} 2007, 4th French Information Retrieval Conference, Saint-{\'{E}}tienne,
France, March 28-30, 2007. Proceedings},
pages = {319--334},
publisher = {Universit{\'{e}} de Saint-{\'{E}}tienne},
year = {2007},
url = {https://doi.org/10.24348/coria.2007.319},
doi = {10.24348/CORIA.2007.319},
timestamp = {Mon, 08 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/coria/TbahritiVRG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/RuchGGLTVA07,
author = {Patrick Ruch and
Antoine Geissb{\"{u}}hler and
Julien Gobeill and
Fr{\'{e}}d{\'{e}}ric Lisacek and
Imad Tbahriti and
Anne{-}Lise Veuthey and
Alan R. Aronson},
editor = {Klaus A. Kuhn and
James R. Warren and
Tze{-}Yun Leong},
title = {Using Discourse Analysis to Improve Text Categorization in {MEDLINE}},
booktitle = {{MEDINFO} 2007 - Proceedings of the 12th World Congress on Health
(Medical) Informatics - Building Sustainable Health Systems, 20-24
August, 2007, Brisbane, Australia},
series = {Studies in Health Technology and Informatics},
volume = {129},
pages = {710--715},
publisher = {{IOS} Press},
year = {2007},
url = {https://doi.org/10.3233/978-1-58603-774-1-710},
doi = {10.3233/978-1-58603-774-1-710},
timestamp = {Mon, 22 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/RuchGGLTVA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/GobeillTER07,
author = {Julien Gobeill and
Imad Tbahriti and
Fr{\'{e}}d{\'{e}}ric Ehrler and
Patrick Ruch},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Vocabulary-Driven Passage Retrieval for Question-Answering in Genomics},
booktitle = {Proceedings of The Sixteenth Text REtrieval Conference, {TREC} 2007,
Gaithersburg, Maryland, USA, November 5-9, 2007},
series = {{NIST} Special Publication},
volume = {500-274},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2007},
url = {http://trec.nist.gov/pubs/trec16/papers/uhosp-geneva.geo.final.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/GobeillTER07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/RuchTGA06,
author = {Patrick Ruch and
Imad Tbahriti and
Julien Gobeill and
Alan R. Aronson},
editor = {Nicoletta Calzolari and
Claire Cardie and
Pierre Isabelle},
title = {Argumentative Feedback: {A} Linguistically-Motivated Term Expansion
for Information Retrieval},
booktitle = {{ACL} 2006, 21st International Conference on Computational Linguistics
and 44th Annual Meeting of the Association for Computational Linguistics,
Proceedings of the Conference, Sydney, Australia, 17-21 July 2006},
publisher = {The Association for Computer Linguistics},
year = {2006},
url = {https://aclanthology.org/P06-2087/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/RuchTGA06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/GobeillMR06,
author = {Julien Gobeill and
Henning M{\"{u}}ller and
Patrick Ruch},
editor = {Carol Peters and
Paul D. Clough and
Fredric C. Gey and
Jussi Karlgren and
Bernardo Magnini and
Douglas W. Oard and
Maarten de Rijke and
Maximilian Stempfhuber},
title = {Translation by Text Categorisation: Medical Image Retrieval in ImageCLEFmed
2006},
booktitle = {Evaluation of Multilingual and Multi-modal Information Retrieval,
7th Workshop of the Cross-Language Evaluation Forum, {CLEF} 2006,
Alicante, Spain, September 20-22, 2006, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4730},
pages = {706--710},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/978-3-540-74999-8\_88},
doi = {10.1007/978-3-540-74999-8\_88},
timestamp = {Sat, 09 Apr 2022 12:42:02 +0200},
biburl = {https://dblp.org/rec/conf/clef/GobeillMR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/GobeillMR06a,
author = {Julien Gobeill and
Henning M{\"{u}}ller and
Patrick Ruch},
editor = {Alessandro Nardi and
Carol Peters and
Jos{\'{e}} Luis Vicedo Gonz{\'{a}}lez and
Nicola Ferro},
title = {Query and Document Translation by Automatic Text Categorization: {A}
Simple Approach to Establish a Strong Textual Baseline for ImageCLEFmed
2006},
booktitle = {Working Notes for {CLEF} 2006 Workshop co-located with the 10th European
Conference on Digital Libraries {(ECDL} 2006), Alicante, Spain, September
20-22, 2006},
series = {{CEUR} Workshop Proceedings},
volume = {1172},
publisher = {CEUR-WS.org},
year = {2006},
url = {https://ceur-ws.org/Vol-1172/CLEF2006wn-ImageCLEF-GobeillEt2006.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:38 +0100},
biburl = {https://dblp.org/rec/conf/clef/GobeillMR06a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/RuchEGTY06,
author = {Patrick Ruch and
Fr{\'{e}}d{\'{e}}ric Ehrler and
Julien Gobeill and
Imad Tbahriti and
Antonio Jimeno{-}Yepes},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Report on the {TREC} 2006 Experiment: Genomics Track},
booktitle = {Proceedings of the Fifteenth Text REtrieval Conference, {TREC} 2006,
Gaithersburg, Maryland, USA, November 14-17, 2006},
series = {{NIST} Special Publication},
volume = {500-272},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2006},
url = {http://trec.nist.gov/pubs/trec15/papers/uhosp-geneva.geo.final.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/RuchEGTY06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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