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BibTeX records: Denis Fourches
@article{DBLP:journals/jcisd/LiF21, author = {Xinhao Li and Denis Fourches}, title = {{SMILES} Pair Encoding: {A} Data-Driven Substructure Tokenization Algorithm for Deep Learning}, journal = {J. Chem. Inf. Model.}, volume = {61}, number = {4}, pages = {1560--1569}, year = {2021}, url = {https://doi.org/10.1021/acs.jcim.0c01127}, doi = {10.1021/ACS.JCIM.0C01127}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcisd/LiF21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/ZinWF20, author = {Phyo Phyo Kyaw Zin and Gavin Williams and Denis Fourches}, title = {{SIME:} synthetic insight-based macrolide enumerator to generate the {V1B} library of 1 billion macrolides}, journal = {J. Cheminformatics}, volume = {12}, number = {1}, pages = {23}, year = {2020}, url = {https://doi.org/10.1186/s13321-020-00427-6}, doi = {10.1186/S13321-020-00427-6}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/ZinWF20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/LiF20, author = {Xinhao Li and Denis Fourches}, title = {Inductive transfer learning for molecular activity prediction: Next-Gen {QSAR} Models with MolPMoFiT}, journal = {J. Cheminformatics}, volume = {12}, number = {1}, pages = {27}, year = {2020}, url = {https://doi.org/10.1186/s13321-020-00430-x}, doi = {10.1186/S13321-020-00430-X}, timestamp = {Tue, 16 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/LiF20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/ZinBF20, author = {Phyo Phyo Kyaw Zin and Alexandre Borrel and Denis Fourches}, title = {Benchmarking 2D/3D/MD-QSAR Models for Imatinib Derivatives: How Far Can We Predict?}, journal = {J. Chem. Inf. Model.}, volume = {60}, number = {7}, pages = {3342--3360}, year = {2020}, url = {https://doi.org/10.1021/acs.jcim.0c00200}, doi = {10.1021/ACS.JCIM.0C00200}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcisd/ZinBF20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/AshKRMF19, author = {Jeremy R. Ash and M{\'{e}}laine A. Kuenemann and Daniel M. Rotroff and Alison A. Motsinger{-}Reif and Denis Fourches}, title = {Cheminformatics approach to exploring and modeling trait-associated metabolite profiles}, journal = {J. Cheminformatics}, volume = {11}, number = {1}, pages = {43:1--43:15}, year = {2019}, url = {https://doi.org/10.1186/s13321-019-0366-3}, doi = {10.1186/S13321-019-0366-3}, timestamp = {Sun, 25 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/AshKRMF19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/WestLRKCWWBMFT19, author = {Rachel Marceau West and Wenbin Lu and Daniel M. Rotroff and M{\'{e}}laine A. Kuenemann and Sheng{-}Mao Chang and Michael C. Wu and Michael J. Wagner and John B. Buse and Alison A. Motsinger{-}Reif and Denis Fourches and Jung{-}Ying Tzeng}, title = {Identifying individual risk rare variants using protein structure guided local tests {(POINT)}}, journal = {PLoS Comput. Biol.}, volume = {15}, number = {2}, year = {2019}, url = {https://doi.org/10.1371/journal.pcbi.1006722}, doi = {10.1371/JOURNAL.PCBI.1006722}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/WestLRKCWWBMFT19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BorrelKF18, author = {Alexandre Borrel and Nicole C. Kleinstreuer and Denis Fourches}, title = {Exploring drug space with ChemMaps.com}, journal = {Bioinform.}, volume = {34}, number = {21}, pages = {3773--3775}, year = {2018}, url = {https://doi.org/10.1093/bioinformatics/bty412}, doi = {10.1093/BIOINFORMATICS/BTY412}, timestamp = {Tue, 29 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BorrelKF18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/DriesscheF18, author = {George van den Driessche and Denis Fourches}, title = {Adverse drug reactions triggered by the common HLA-B*57: 01 variant: virtual screening of DrugBank using 3D molecular docking}, journal = {J. Cheminformatics}, volume = {10}, number = {1}, pages = {3:1--3:24}, year = {2018}, url = {https://doi.org/10.1186/s13321-018-0257-z}, doi = {10.1186/S13321-018-0257-Z}, timestamp = {Mon, 27 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/DriesscheF18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/ZinWF18, author = {Phyo Phyo Kyaw Zin and Gavin Williams and Denis Fourches}, title = {Cheminformatics-based enumeration and analysis of large libraries of macrolide scaffolds}, journal = {J. Cheminformatics}, volume = {10}, number = {1}, pages = {53:1--53:20}, year = {2018}, url = {https://doi.org/10.1186/s13321-018-0307-6}, doi = {10.1186/S13321-018-0307-6}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/ZinWF18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/LowAFSAMRT18, author = {Yen S. Low and Vinicius M. Alves and Denis Fourches and Alexander Sedykh and Carolina Horta Andrade and Eugene N. Muratov and Ivan Rusyn and Alexander Tropsha}, title = {Chemistry-Wide Association Studies {(CWAS):} {A} Novel Framework for Identifying and Interpreting Structure-Activity Relationships}, journal = {J. Chem. Inf. Model.}, volume = {58}, number = {11}, pages = {2203--2213}, year = {2018}, url = {https://doi.org/10.1021/acs.jcim.8b00450}, doi = {10.1021/ACS.JCIM.8B00450}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcisd/LowAFSAMRT18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/BorrelF17, author = {Alexandre Borrel and Denis Fourches}, title = {RealityConvert: a tool for preparing 3D models of biochemical structures for augmented and virtual reality}, journal = {Bioinform.}, volume = {33}, number = {23}, pages = {3816--3818}, year = {2017}, url = {https://doi.org/10.1093/bioinformatics/btx485}, doi = {10.1093/BIOINFORMATICS/BTX485}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/BorrelF17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/DriesscheF17, author = {George van den Driessche and Denis Fourches}, title = {Adverse drug reactions triggered by the common HLA-B*57: 01 variant: a molecular docking study}, journal = {J. Cheminformatics}, volume = {9}, number = {1}, pages = {13:1--13:17}, year = {2017}, url = {https://doi.org/10.1186/s13321-017-0202-6}, doi = {10.1186/S13321-017-0202-6}, timestamp = {Mon, 27 Sep 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcheminf/DriesscheF17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/AshF17, author = {Jeremy R. Ash and Denis Fourches}, title = {Characterizing the Chemical Space of {ERK2} Kinase Inhibitors Using Descriptors Computed from Molecular Dynamics Trajectories}, journal = {J. Chem. Inf. Model.}, volume = {57}, number = {6}, pages = {1286--1299}, year = {2017}, url = {https://doi.org/10.1021/acs.jcim.7b00048}, doi = {10.1021/ACS.JCIM.7B00048}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcisd/AshF17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jamia/LowCBFZNRET16, author = {Yen S. Low and Ola Caster and Tomas Bergvall and Denis Fourches and Xiaoling Zang and G. Niklas Nor{\'{e}}n and Ivan Rusyn and I. Ralph Edwards and Alexander Tropsha}, title = {Cheminformatics-aided pharmacovigilance: application to Stevens-Johnson Syndrome}, journal = {J. Am. Medical Informatics Assoc.}, volume = {23}, number = {5}, pages = {968--978}, year = {2016}, url = {https://doi.org/10.1093/jamia/ocv127}, doi = {10.1093/JAMIA/OCV127}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jamia/LowCBFZNRET16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/FourchesMT16, author = {Denis Fourches and Eugene N. Muratov and Alexander Tropsha}, title = {Trust, but Verify {II:} {A} Practical Guide to Chemogenomics Data Curation}, journal = {J. Chem. Inf. Model.}, volume = {56}, number = {7}, pages = {1243--1252}, year = {2016}, url = {https://doi.org/10.1021/acs.jcim.6b00129}, doi = {10.1021/ACS.JCIM.6B00129}, timestamp = {Fri, 06 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcisd/FourchesMT16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/FourchesPT15, author = {Denis Fourches and Regina Politi and Alexander Tropsha}, title = {Target-Specific Native/Decoy Pose Classifier Improves the Accuracy of Ligand Ranking in the {CSAR} 2013 Benchmark}, journal = {J. Chem. Inf. Model.}, volume = {55}, number = {1}, pages = {63--71}, year = {2015}, url = {https://doi.org/10.1021/ci500519w}, doi = {10.1021/CI500519W}, timestamp = {Fri, 06 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcisd/FourchesPT15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/FourchesSRT14, author = {Denis Fourches and Maria F. Sassano and Bryan L. Roth and Alexander Tropsha}, title = {{HTS} navigator: freely accessible cheminformatics software for analyzing high-throughput screening data}, journal = {Bioinform.}, volume = {30}, number = {4}, pages = {588--589}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btt718}, doi = {10.1093/BIOINFORMATICS/BTT718}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/FourchesSRT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/FourchesT14, author = {Denis Fourches and Alexander Tropsha}, title = {Fishing out the signal in polypharmacological high-throughput screening data using novel navigator cheminformatics software}, journal = {J. Cheminformatics}, volume = {6}, number = {{S-1}}, pages = {14}, year = {2014}, url = {https://doi.org/10.1186/1758-2946-6-S1-P14}, doi = {10.1186/1758-2946-6-S1-P14}, timestamp = {Wed, 14 Nov 2018 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/FourchesT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcheminf/LowSFT14, author = {Yen S. Low and Alexander Sedykh and Denis Fourches and Alexander Tropsha}, title = {Chemistry-wide association studies {(CWAS)} to determine joint toxicity effects of co-occurring chemical features}, journal = {J. Cheminformatics}, volume = {6}, number = {{S-1}}, pages = {15}, year = {2014}, url = {https://doi.org/10.1186/1758-2946-6-S1-P15}, doi = {10.1186/1758-2946-6-S1-P15}, timestamp = {Mon, 28 Dec 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcheminf/LowSFT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/GolbraikhMFT14, author = {Alexander Golbraikh and Eugene N. Muratov and Denis Fourches and Alexander Tropsha}, title = {Data Set Modelability by {QSAR}}, journal = {J. Chem. Inf. Model.}, volume = {54}, number = {1}, pages = {1--4}, year = {2014}, url = {https://doi.org/10.1021/ci400572x}, doi = {10.1021/CI400572X}, timestamp = {Fri, 06 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcisd/GolbraikhMFT14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/ZhangFSZGECCSHGGT13, author = {Liying Zhang and Denis Fourches and Alexander Sedykh and Hao Zhu and Alexander Golbraikh and Sean Ekins and Julie Clark and Michele C. Connelly and Martina Sigal and Dena Hodges and Armand Guiguemde and R. Kiplin Guy and Alexander Tropsha}, title = {Discovery of Novel Antimalarial Compounds Enabled by QSAR-Based Virtual Screening}, journal = {J. Chem. Inf. Model.}, volume = {53}, number = {2}, pages = {475--492}, year = {2013}, url = {https://doi.org/10.1021/ci300421n}, doi = {10.1021/CI300421N}, timestamp = {Fri, 10 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcisd/ZhangFSZGECCSHGGT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/FourchesMDDT13, author = {Denis Fourches and Eugene N. Muratov and Feng Ding and Nikolay V. Dokholyan and Alexander Tropsha}, title = {Predicting Binding Affinity of {CSAR} Ligands Using Both Structure-Based and Ligand-Based Approaches}, journal = {J. Chem. Inf. Model.}, volume = {53}, number = {8}, pages = {1915--1922}, year = {2013}, url = {https://doi.org/10.1021/ci400216q}, doi = {10.1021/CI400216Q}, timestamp = {Fri, 06 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcisd/FourchesMDDT13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/FourchesMT10, author = {Denis Fourches and Eugene N. Muratov and Alexander Tropsha}, title = {Trust, But Verify: On the Importance of Chemical Structure Curation in Cheminformatics and {QSAR} Modeling Research}, journal = {J. Chem. Inf. Model.}, volume = {50}, number = {7}, pages = {1189--1204}, year = {2010}, url = {https://doi.org/10.1021/ci100176x}, doi = {10.1021/CI100176X}, timestamp = {Fri, 06 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcisd/FourchesMT10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/SushkoNKPCLGHSMXLYOHDSTPAKMYFMTBHMMVPT10, author = {Iurii Sushko and Sergii Novotarskyi and Robert K{\"{o}}rner and Anil Kumar Pandey and Artem Cherkasov and Jiazhong Li and Paola Gramatica and Katja Hansen and Timon Schroeter and Klaus{-}Robert M{\"{u}}ller and Lili Xi and Huanxiang Liu and Xiaojun Yao and Tomas {\"{O}}berg and Farhad Hormozdiari and Phuong Dao and S{\"{u}}leyman Cenk Sahinalp and Roberto Todeschini and Pavel G. Polishchuk and Anatoly G. Artemenko and Victor Kuzmin and Todd Martin and Douglas M. Young and Denis Fourches and Eugene N. Muratov and Alexander Tropsha and Igor I. Baskin and Dragos Horvath and Gilles Marcou and Christophe Muller and Alexandre Varnek and Volodymyr V. Prokopenko and Igor V. Tetko}, title = {Applicability Domains for Classification Problems: Benchmarking of Distance to Models for Ames Mutagenicity Set}, journal = {J. Chem. Inf. Model.}, volume = {50}, number = {12}, pages = {2094--2111}, year = {2010}, url = {https://doi.org/10.1021/ci100253r}, doi = {10.1021/CI100253R}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcisd/SushkoNKPCLGHSMXLYOHDSTPAKMYFMTBHMMVPT10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/ZhuTFVPGODCT08, author = {Hao Zhu and Alexander Tropsha and Denis Fourches and Alexandre Varnek and Ester Papa and Paola Gramatica and Tomas {\"{O}}berg and Phuong Dao and Artem Cherkasov and Igor V. Tetko}, title = {Combinatorial {QSAR} Modeling of Chemical Toxicants Tested against Tetrahymena pyriformis}, journal = {J. Chem. Inf. Model.}, volume = {48}, number = {4}, pages = {766--784}, year = {2008}, url = {https://doi.org/10.1021/ci700443v}, doi = {10.1021/CI700443V}, timestamp = {Fri, 10 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcisd/ZhuTFVPGODCT08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/TetkoSPZTPOTFV08, author = {Igor V. Tetko and Iurii Sushko and Anil Kumar Pandey and Hao Zhu and Alexander Tropsha and Ester Papa and Tomas {\"{O}}berg and Roberto Todeschini and Denis Fourches and Alexandre Varnek}, title = {Critical Assessment of {QSAR} Models of Environmental Toxicity against \emph{Tetrahymena pyriformis: } Focusing on Applicability Domain and Overfitting by Variable Selection}, journal = {J. Chem. Inf. Model.}, volume = {48}, number = {9}, pages = {1733--1746}, year = {2008}, url = {https://doi.org/10.1021/ci800151m}, doi = {10.1021/CI800151M}, timestamp = {Fri, 10 Nov 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcisd/TetkoSPZTPOTFV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/TetkoSAYDFHFJLV06, author = {Igor V. Tetko and Vitaly P. Solov'ev and Alexey V. Antonov and Xiaojun Yao and Jean{-}Pierre Doucet and Bo Tao Fan and Frank Hoonakker and Denis Fourches and Piere Jost and Nicolas Lachiche and Alexandre Varnek}, title = {Benchmarking of Linear and Nonlinear Approaches for Quantitative Structure-Property Relationship Studies of Metal Complexation with Ionophores}, journal = {J. Chem. Inf. Model.}, volume = {46}, number = {2}, pages = {808--819}, year = {2006}, url = {https://doi.org/10.1021/ci0504216}, doi = {10.1021/CI0504216}, timestamp = {Wed, 07 Dec 2022 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcisd/TetkoSAYDFHFJLV06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcamd/VarnekFHS05, author = {Alexandre Varnek and Denis Fourches and Frank Hoonakker and Vitaly P. Solov'ev}, title = {Substructural fragments: an universal language to encode reactions, molecular and supramolecular structures}, journal = {J. Comput. Aided Mol. Des.}, volume = {19}, number = {9-10}, pages = {693--703}, year = {2005}, url = {https://doi.org/10.1007/s10822-005-9008-0}, doi = {10.1007/S10822-005-9008-0}, timestamp = {Thu, 16 Apr 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcamd/VarnekFHS05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcisd/VarnekFSBTKFK04, author = {Alexandre Varnek and Denis Fourches and Vitaly P. Solov'ev and Vladimir E. Baulin and Alexander N. Turanov and Vasili K. Karandashev and Dan C. Fara and Alan R. Katritzky}, title = {"In Silico" Design of New Uranyl Extractants Based on Phosphoryl-Containing Podands: {QSPR} Studies, Generation and Screening of Virtual Combinatorial Library, and Experimental Tests}, journal = {J. Chem. Inf. Model.}, volume = {44}, number = {4}, pages = {1365--1382}, year = {2004}, url = {https://doi.org/10.1021/ci049976b}, doi = {10.1021/CI049976B}, timestamp = {Fri, 06 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/jcisd/VarnekFSBTKFK04.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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