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BibTeX records: Alistair R. R. Forrest
@article{DBLP:journals/ploscb/Alinejad-RoknyM22, author = {Hamid Alinejad{-}Rokny and Rassa Ghavami Modegh and Hamid R. Rabiee and Ehsan Ramezani Sarbandi and Narges Rezaie and Kin Tung Tam and Alistair R. R. Forrest}, title = {MaxHiC: {A} robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments}, journal = {PLoS Comput. Biol.}, volume = {18}, number = {6}, year = {2022}, url = {https://doi.org/10.1371/journal.pcbi.1010241}, doi = {10.1371/JOURNAL.PCBI.1010241}, timestamp = {Mon, 28 Aug 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/Alinejad-RoknyM22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/AlinejadRoknyMRSRTF22, author = {Hamid Alinejad{-}Rokny and Rassa Ghavami Modegh and Hamid R. Rabiee and Ehsan Ramezani Sarbandi and Narges Rezaie and Kin Tung Tam and Alistair R. R. Forrest}, title = {Correction: MaxHiC: {A} robust background correction model to identify biologically relevant chromatin interactions in Hi-C and capture Hi-C experiments}, journal = {PLoS Comput. Biol.}, volume = {18}, number = {9}, pages = {1010515}, year = {2022}, url = {https://doi.org/10.1371/journal.pcbi.1010515}, doi = {10.1371/JOURNAL.PCBI.1010515}, timestamp = {Mon, 26 Jun 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/AlinejadRoknyMRSRTF22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/HouDF19, author = {Rui Hou and Elena Denisenko and Alistair R. R. Forrest}, title = {scMatch: a single-cell gene expression profile annotation tool using reference datasets}, journal = {Bioinform.}, volume = {35}, number = {22}, pages = {4688--4695}, year = {2019}, url = {https://doi.org/10.1093/bioinformatics/btz292}, doi = {10.1093/BIOINFORMATICS/BTZ292}, timestamp = {Mon, 15 Aug 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/HouDF19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/BaillieBHCGNBST18, author = {J. Kenneth Baillie and Andrew Bretherick and Christopher S. Haley and Sara Clohisey and Alan Gray and Lucile P. A. Neyton and Jeffrey Barrett and Eli A. Stahl and Albert Tenesa and Robin Andersson and J. Ben Brown and Geoffrey J. Faulkner and Marina Lizio and Ulf Schaefer and Carsten O. Daub and Masayoshi Itoh and Naoto Kondo and Timo Lassmann and Jun Kawai and IIBDGC Consortium and Damian Mole and Vladimir B. Bajic and Peter Heutink and Michael Rehli and Hideya Kawaji and Albin Sandelin and Harukazu Suzuki and Jack Satsangi and Christine A. Wells and Nir Hacohen and Tom C. Freeman and Yoshihide Hayashizaki and Piero Carninci and Alistair R. R. Forrest and David A. Hume}, title = {Shared activity patterns arising at genetic susceptibility loci reveal underlying genomic and cellular architecture of human disease}, journal = {PLoS Comput. Biol.}, volume = {14}, number = {3}, year = {2018}, url = {https://doi.org/10.1371/journal.pcbi.1005934}, doi = {10.1371/JOURNAL.PCBI.1005934}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/BaillieBHCGNBST18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/LizioHANKSMAMML17, author = {Marina Lizio and Jayson Harshbarger and Imad Abugessaisa and Shuei Noguchi and Atsushi Kondo and Jessica Severin and Chris Mungall and David J. Arenillas and Anthony Mathelier and Yulia A. Medvedeva and Andreas Lennartsson and Finn Drabl{\o}s and Jordan A. Ramilowski and Owen J. L. Rackham and Julian Gough and Robin Andersson and Albin Sandelin and Hans Ienasescu and Hiromasa Ono and Hidemasa Bono and Yoshihide Hayashizaki and Piero Carninci and Alistair R. R. Forrest and Takeya Kasukawa and Hideya Kawaji}, title = {Update of the {FANTOM} web resource: high resolution transcriptome of diverse cell types in mammals}, journal = {Nucleic Acids Res.}, volume = {45}, number = {Database-Issue}, pages = {D737--D743}, year = {2017}, url = {https://doi.org/10.1093/nar/gkw995}, doi = {10.1093/NAR/GKW995}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/LizioHANKSMAMML17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/AbugessaisaSSKH16, author = {Imad Abugessaisa and Hisashi Shimoji and Serkan Sahin and Atsushi Kondo and Jayson Harshbarger and Marina Lizio and Yoshihide Hayashizaki and Piero Carninci and Alistair R. R. Forrest and Takeya Kasukawa and Hideya Kawaji}, title = {{FANTOM5} transcriptome catalog of cellular states based on Semantic MediaWiki}, journal = {Database J. Biol. Databases Curation}, volume = {2016}, year = {2016}, url = {https://doi.org/10.1093/database/baw105}, doi = {10.1093/DATABASE/BAW105}, timestamp = {Thu, 13 Aug 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/AbugessaisaSSKH16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/biodb/IenasescuLAVRCV16, author = {Hans Ienasescu and Kang Li and Robin Andersson and Morana Vitezic and Sarah Rennie and Yun Chen and Kristoffer Vitting{-}Seerup and Emil Lagoni and Mette Boyd and Jette Bornholdt and Michiel J. L. de Hoon and Hideya Kawaji and Timo Lassmann and The Fantom Consortium and Yoshihide Hayashizaki and Alistair R. R. Forrest and Piero Carninci and Albin Sandelin}, title = {On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase}, journal = {Database J. Biol. Databases Curation}, volume = {2016}, year = {2016}, url = {https://doi.org/10.1093/database/baw144}, doi = {10.1093/DATABASE/BAW144}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/biodb/IenasescuLAVRCV16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ArenillasFKLcWM16, author = {David J. Arenillas and Alistair R. R. Forrest and Hideya Kawaji and Timo Lassmann and Wyeth W. Wasserman and Anthony Mathelier}, title = {CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs}, journal = {Bioinform.}, volume = {32}, number = {18}, pages = {2858--2860}, year = {2016}, url = {https://doi.org/10.1093/bioinformatics/btw337}, doi = {10.1093/BIOINFORMATICS/BTW337}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ArenillasFKLcWM16.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/AitkenMAIKLDACF15, author = {Stuart Aitken and Shigeyuki Magi and Ahmad M. N. Alhendi and Masayoshi Itoh and Hideya Kawaji and Timo Lassmann and Carsten O. Daub and Erik Arner and Piero Carninci and Alistair R. R. Forrest and Yoshihide Hayashizaki and Levon M. Khachigian and Mariko Okada{-}Hatakeyama and Colin A. M. Semple}, title = {Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response}, journal = {PLoS Comput. Biol.}, volume = {11}, number = {4}, year = {2015}, url = {https://doi.org/10.1371/journal.pcbi.1004217}, doi = {10.1371/JOURNAL.PCBI.1004217}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/AitkenMAIKLDACF15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/DimontHSFKCH14, author = {Emmanuel Dimont and Oliver Hofmann and Shannan J. Ho Sui and Alistair R. R. Forrest and Hideya Kawaji and Winston Hide}, title = {CAGExploreR: an {R} package for the analysis and visualization of promoter dynamics across multiple experiments}, journal = {Bioinform.}, volume = {30}, number = {8}, pages = {1183--1184}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btu125}, doi = {10.1093/BIOINFORMATICS/BTU125}, timestamp = {Thu, 25 May 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/DimontHSFKCH14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nature/ConsortiumFKRB14, author = {The Fantom Consortium and RIKEN PMII and RIKEN CLST (DGT) and Alistair R. R. Forrest and Hideya Kawaji and Michael Rehli and J. Kenneth Baillie and Michiel J. L. de Hoon and Vanja Haberle and Timo Lassmann and Ivan V. Kulakovskiy and Marina Lizio and Masayoshi Itoh and Robin Andersson and Christopher J. Mungall and Terrence F. Meehan and Sebastian Schmeier and Nicolas Bertin and Mette J{\o}rgensen and Emmanuel Dimont and Erik Arner and Christian Schmidl and Ulf Schaefer and Yulia A. Medvedeva and Charles Plessy and Morana Vitezic and Jessica Severin and Colin A. M. Semple and Yuri Ishizu and Robert S. Young and Margherita Francescatto and Intikhab Alam and Davide Albanese and Gabriel M. Altschuler and Takahiro Arakawa and John A. C. Archer and Peter Arner and Magda Babina and Sarah Rennie and Piotr J. Balwierz and Anthony G. Beckhouse and Swati Pradhan{-}Bhatt and Judith A. Blake and Antje Blumenthal and Beatrice Bodega and Alessandro Bonetti and James Briggs and Frank Brombacher and A. Maxwell Burroughs and Andrea Califano and Carlo V. Cannistraci and Daniel Carbajo and Yun Chen and Marco Chierici and Yari Ciani and Hans Clevers and Emiliano Dalla and Carrie A. Davis and Michael Detmar and Alexander D. Diehl and Taeko Dohi and Finn Drabl{\o}s and Albert S. B. Edge and Matthias Edinger and Karl Ekwall and Mitsuhiro Endoh and Hideki Enomoto and Michela Fagiolini and Lynsey Fairbairn and Hai Fang and Mary C. Farach{-}Carson and Geoffrey J. Faulkner and Alexander V. Favorov and Malcolm E. Fisher and Martin C. Frith and Rie Fujita and Shiro Fukuda and Cesare Furlanello and Masaaki Furuno and Jun{-}ichi Furusawa and Teunis B. Geijtenbeek and Andrew P. Gibson and Thomas R. Gingeras and Daniel Goldowitz and Julian Gough and Sven Guhl and Reto Guler and Stefano Gustincich and Thomas J. Ha and Masahide Hamaguchi and Mitsuko Hara and Matthias Harbers and Jayson Harshbarger and Akira Hasegawa and Yuki Hasegawa and Takehiro Hashimoto and Meenhard Herlyn and Kelly J. Hitchens and Shannan J. Ho Sui and Oliver M. Hofmann and Ilka Hoof and Fumi Hori and Lukasz Huminiecki and Kei Iida and Tomokatsu Ikawa and Boris R. Jankovic and Hui Jia and Anagha Joshi and Giuseppe Jurman and Bogumil Kaczkowski and Chieko Kai and Kaoru Kaida and Ai Kaiho and Kazuhiro Kajiyama and Mutsumi Kanamori{-}Katayama and Artem S. Kasianov and Takeya Kasukawa and Shintaro Katayama and Sachi Kato and Shuji Kawaguchi and Hiroshi Kawamoto and Yuki I. Kawamura and Tsugumi Kawashima and Judith S. Kempfle and Tony J. Kenna and Juha Kere and Levon M. Khachigian and Toshio Kitamura and S. Peter Klinken and Alan J. Knox and Miki Kojima and Soichi Kojima and Naoto Kondo and Haruhiko Koseki and Shigeo Koyasu and Sarah Krampitz and Atsutaka Kubosaki and Andrew T. Kwon and Jeroen F. J. Laros and Weonju Lee and Andreas Lennartsson and Kang Li and Berit Lilje and Leonard Lipovich and Alan Mackay{-}Sim and Ri{-}ichiroh Manabe and Jessica Cara Mar and Benoit Marchand and Anthony Mathelier and Niklas Mejhert and Alison M. Meynert and Yosuke Mizuno and David A. de Lima Morais and Hiromasa Morikawa and Mitsuru Morimoto and Kazuyo Moro and Efthymios Motakis and Hozumi Motohashi and Christine Mummery and Mitsuyoshi Murata and Sayaka Nagao{-}Sato and Yutaka Nakachi and Fumio Nakahara and Toshiyuki Nakamura and Yukio Nakamura and Kenichi Nakazato and Erik van Nimwegen and Noriko Ninomiya and Hiromi Nishiyori and Shohei Noma and Tadasuke Nozaki and Soichi Ogishima and Naganari Ohkura and Hiroko Ohmiya and Hiroshi Ohno and Mitsuhiro Ohshima and Mariko Okada{-}Hatakeyama and Yasushi Okazaki and Valerio Orlando and Dmitry A. Ovchinnikov and Arnab Pain and Robert Passier and Margaret Patrikakis and Helena Persson and Silvano Piazza and James G. D. Prendergast and Owen J. L. Rackham and Jordan A. Ramilowski and Mamoon Rashid and Timothy Ravasi and Patrizia Rizzu and Marco Roncador and Sugata Roy and Morten B. Rye and Eri Saijyo and Antti Sajantila and Akiko Saka and Shimon Sakaguchi and Mizuho Sakai and Hiroki Sato and Hironori Sato and Suzana Savvi and Alka Saxena and Claudio Schneider and Erik A. Schultes and Gundula G. Schulze{-}Tanzil and Anita Schwegmann and Thierry Sengstag and Guojun Sheng and Hisashi Shimoji and Yishai Shimoni and Jay W. Shin and Christophe Simon and Daisuke Sugiyama and Takaaki Sugiyama and Masanori Suzuki and Naoko Suzuki and Rolf K. Swoboda and Peter A. C. 't Hoen and Michihira Tagami and Naoko Takahashi and Jun Takai and Hiroshi Tanaka and Hideki Tatsukawa and Zuotian Tatum and Mark Thompson and Hiroo Toyoda and Tetsuro Toyoda and Eivind Valen and Marc van de Wetering and Linda M. van den Berg and Roberto Verardo and Dipti Vijayan and Ilya E. Vorontsov and Wyeth W. Wasserman and Shoko Watanabe and Christine A. Wells and Louise N. Winteringham and Ernst Wolvetang and Emily J. Wood and Yoko Yamaguchi and Masayuki Yamamoto and Misako Yoneda and Yohei Yonekura and Shigehiro Yoshida and Susan E. Zabierowski and Peter G. Zhang and Xiaobei Zhao and Silvia Zucchelli and Kim M. Summers and Harukazu Suzuki and Carsten O. Daub and Jun Kawai and Peter Heutink and Winston Hide and Tom C. Freeman and Boris Lenhard and Vladimir B. Bajic and Martin S. Taylor and Vsevolod J. Makeev and Albin Sandelin and David A. Hume and Piero Carninci and Yoshihide Hayashizaki}, title = {A promoter-level mammalian expression atlas}, journal = {Nat.}, volume = {507}, number = {7493}, pages = {462--470}, year = {2014}, url = {https://doi.org/10.1038/nature13182}, doi = {10.1038/NATURE13182}, timestamp = {Tue, 21 Feb 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/nature/ConsortiumFKRB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/nar/KawajiSLFNRSISCHD11, author = {Hideya Kawaji and Jessica Severin and Marina Lizio and Alistair R. R. Forrest and Erik van Nimwegen and Michael Rehli and Kate Schroder and Katharine M. Irvine and Harukazu Suzuki and Piero Carninci and Yoshihide Hayashizaki and Carsten O. Daub}, title = {Update of the {FANTOM} web resource: from mammalian transcriptional landscape to its dynamic regulation}, journal = {Nucleic Acids Res.}, volume = {39}, number = {Database-Issue}, pages = {856--860}, year = {2011}, url = {https://doi.org/10.1093/nar/gkq1112}, doi = {10.1093/NAR/GKQ1112}, timestamp = {Sun, 17 May 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/nar/KawajiSLFNRSISCHD11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/ForrestTFGFTSKKHG06, author = {Alistair R. R. Forrest and Darrin F. Taylor and J. Lynn Fink and M. Milena Gongora and Cameron Flegg and Rohan D. Teasdale and Harukazu Suzuki and Mutsumi Kanamori and Chikatoshi Kai and Yoshihide Hayashizaki and Sean M. Grimmond}, title = {PhosphoregDB: The tissue and sub-cellular distribution of mammalian protein kinases and phosphatases}, journal = {{BMC} Bioinform.}, volume = {7}, pages = {82}, year = {2006}, url = {https://doi.org/10.1186/1471-2105-7-82}, doi = {10.1186/1471-2105-7-82}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/ForrestTFGFTSKKHG06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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