BibTeX records: Nuno A. Fonseca

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@inproceedings{DBLP:conf/pacbb/SarmentoGKGPGF21,
  author       = {Cindy Sarmento and
                  S{\'{\i}}lvia Guimar{\~{a}}es and
                  G{\"{u}}lsah Merve Kilin{\c{c}} and
                  Anders G{\"{o}}therstr{\"{o}}m and
                  Ana Elisabete Pires and
                  Catarina Ginja and
                  Nuno A. Fonseca},
  editor       = {Miguel Rocha and
                  Florentino Fdez{-}Riverola and
                  Mohd Saberi Mohamad and
                  Roberto Casado{-}Vara},
  title        = {A Study on Burrows-Wheeler Aligner's Performance Optimization for
                  Ancient {DNA} Mapping},
  booktitle    = {Practical Applications of Computational Biology {\&} Bioinformatics,
                  15th International Conference {(PACBB} 2021), Salamanca, Spain, 6-8
                  October, 2021},
  series       = {Lecture Notes in Networks and Systems},
  volume       = {325},
  pages        = {105--114},
  publisher    = {Springer},
  year         = {2021},
  url          = {https://doi.org/10.1007/978-3-030-86258-9\_11},
  doi          = {10.1007/978-3-030-86258-9\_11},
  timestamp    = {Wed, 12 Oct 2022 08:58:53 +0200},
  biburl       = {https://dblp.org/rec/conf/pacbb/SarmentoGKGPGF21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PapatheodorouMM20,
  author       = {Irene Papatheodorou and
                  Pablo A. Moreno and
                  Jonathan R. Manning and
                  Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
                  Nancy George and
                  Silvie Fexova and
                  Nuno A. Fonseca and
                  Anja F{\"{u}}llgrabe and
                  Matthew Green and
                  Ni Huang and
                  Laura Huerta and
                  Haider Iqbal and
                  Monica Jianu and
                  Suhaib Mohammed and
                  Lingyun Zhao and
                  Andrew F. Jarnuczak and
                  Simon Jupp and
                  John C. Marioni and
                  Kerstin B. Meyer and
                  Robert Petryszak and
                  Cesar Augusto Prada Medina and
                  Carlos Talavera{-}L{\'{o}}pez and
                  Sarah A. Teichmann and
                  Juan Antonio Vizca{\'{\i}}no and
                  Alvis Brazma},
  title        = {Expression Atlas update: from tissues to single cells},
  journal      = {Nucleic Acids Res.},
  volume       = {48},
  number       = {Database-Issue},
  pages        = {D77--D83},
  year         = {2020},
  url          = {https://doi.org/10.1093/nar/gkz947},
  doi          = {10.1093/NAR/GKZ947},
  timestamp    = {Wed, 24 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PapatheodorouMM20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/RheinbayNAWSTHH20,
  author       = {Esther Rheinbay and
                  Morten Muhlig Nielsen and
                  Federico Abascal and
                  Jeremiah Wala and
                  Ofer Shapira and
                  Grace Tiao and
                  Henrik Hornsh{\o}j and
                  Julian M. Hess and
                  Randi Istrup Juul and
                  Ziao Lin and
                  Lars Feuerbach and
                  Radhakrishnan Sabarinathan and
                  Tobias Madsen and
                  Jaegil Kim and
                  Loris Mularoni and
                  Shimin Shuai and
                  Andr{\'{e}}s Lanz{\'{o}}s and
                  Carl Herrmann and
                  Yosef E. Maruvka and
                  Ciyue Shen and
                  Samirkumar B. Amin and
                  Pratiti Bandopadhayay and
                  Johanna Bertl and
                  Keith A. Boroevich and
                  John Busanovich and
                  Joana Carlevaro{-}Fita and
                  Dimple Chakravarty and
                  Calvin Wing Yiu Chan and
                  David Craft and
                  Priyanka Dhingra and
                  Klev Diamanti and
                  Nuno A. Fonseca and
                  Abel Gonzalez{-}Perez and
                  Qianyun Guo and
                  Mark P. Hamilton and
                  Nicholas J. Haradhvala and
                  Chen Hong and
                  Keren Isaev and
                  Todd A. Johnson and
                  Malene Juul and
                  Andr{\'{e}} Kahles and
                  Abdullah Kahraman and
                  Youngwook Kim and
                  Jan Komorowski and
                  Kiran Kumar and
                  Sushant Kumar and
                  Donghoon Lee and
                  Kjong{-}Van Lehmann and
                  Yilong Li and
                  Eric Minwei Liu and
                  Lucas Lochovsky and
                  Keunchil Park and
                  Oriol Pich and
                  Nicola D. Roberts and
                  Gordon Saksena and
                  Steven E. Schumacher and
                  Nikos Sidiropoulos and
                  Lina Sieverling and
                  Nasa Sinnott{-}Armstrong and
                  Chip Stewart and
                  David Tamborero and
                  Jose M. C. Tubio and
                  Husen M. Umer and
                  Liis Uusk{\"{u}}la{-}Reimand and
                  Claes Wadelius and
                  Lina Wadi and
                  Xiaotong Yao and
                  Cheng{-}Zhong Zhang and
                  Jing Zhang and
                  James E. Haber and
                  Asger Hobolth and
                  Marcin Imielinski and
                  Manolis Kellis and
                  Michael S. Lawrence and
                  Christian von Mering and
                  Hidewaki Nakagawa and
                  Benjamin J. Raphael and
                  Mark A. Rubin and
                  Chris Sander and
                  Lincoln D. Stein and
                  Joshua M. Stuart and
                  Tatsuhiko Tsunoda and
                  David A. Wheeler and
                  Rory Johnson and
                  J{\"{u}}ri Reimand and
                  Mark Gerstein and
                  Ekta Khurana and
                  Peter J. Campbell and
                  N{\'{u}}ria L{\'{o}}pez{-}Bigas and
                  Gary D. Bader and
                  Jonathan Barenboim and
                  Rameen Beroukhim and
                  S{\o}ren Brunak and
                  Ken Chen and
                  Jung Kyoon Choi and
                  Jordi Deu{-}Pons and
                  J. Lynn Fink and
                  Joan Frigola and
                  Carlo Gambacorti Passerini and
                  Dale W. Garsed and
                  Gad Getz and
                  Ivo Glynne Gut and
                  David Haan and
                  Arif Ozgun Harmanci and
                  Mohamed Helmy and
                  Ermin Hodzic and
                  Jos{\'{e}} M. G. Izarzugaza and
                  Jong K. Kim and
                  Jan O. Korbel and
                  Erik Larsson and
                  Shantao Li and
                  Xiaotong Li and
                  Shaoke Lou and
                  Kathleen Marchal and
                  I{\~{n}}igo Martincorena and
                  Alexander Mart{\'{\i}}nez{-}Fundichely and
                  Patrick D. McGillivray and
                  William Meyerson and
                  Ferran Mui{\~{n}}os and
                  Marta Paczkowska and
                  Kiejung Park and
                  Jakob Skou Pedersen and
                  Tirso Pons and
                  Sergio Pulido{-}Tamayo and
                  Iker Reyes{-}Salazar and
                  Matthew A. Reyna and
                  Carlota Rubio{-}Perez and
                  S{\"{u}}leyman Cenk Sahinalp and
                  Leonidas Salichos and
                  Mark Shackleton and
                  Raunak Shrestha and
                  Alfonso Valencia and
                  Miguel Vazquez and
                  Lieven P. C. Verbeke and
                  Jiayin Wang and
                  Jonathan Warrell and
                  Sebastian M. Waszak and
                  Joachim Weischenfeldt and
                  Guanming Wu and
                  Jun Yu and
                  Xuanping Zhang and
                  Yan Zhang and
                  Zhongming Zhao and
                  Lihua Zou and
                  Kadir C. Akdemir and
                  Eva G. Alvarez and
                  Adrian Baez{-}Ortega and
                  Paul C. Boutros and
                  David D. L. Bowtell and
                  Benedikt Brors and
                  Kathleen H. Burns and
                  Kin Chan and
                  Isidro Cort{\'{e}}s{-}Ciriano and
                  Ana Dueso{-}Barroso and
                  Andrew J. Dunford and
                  Paul A. Edwards and
                  Xavier Estivill and
                  Dariush Etemadmoghadam and
                  Milana Frenkel{-}Morgenstern and
                  Dmitry A. Gordenin and
                  Barbara Hutter and
                  David T. W. Jones and
                  Young Seok Ju and
                  Marat D. Kazanov and
                  Leszek J. Klimczak and
                  Youngil Koh and
                  Eunjung Alice Lee and
                  Jake June{-}Koo Lee and
                  Andy G. Lynch and
                  Geoff MacIntyre and
                  Florian Markowetz and
                  Matthew Meyerson and
                  Satoru Miyano and
                  Fabio C. P. Navarro and
                  Stephan Ossowski and
                  Peter J. Park and
                  John V. Pearson and
                  Montserrat Puiggr{\`{o}}s and
                  Karsten Rippe and
                  Steven A. Roberts and
                  Bernardo Rodriguez{-}Martin and
                  Ralph Scully and
                  David Torrents and
                  Izar Villasante and
                  Nicola Waddell and
                  Jeremiah A. Wala and
                  Lixing Yang and
                  Sung{-}Soo Yoon and
                  Jorge Zamora},
  title        = {Analyses of non-coding somatic drivers in 2,658 cancer whole genomes},
  journal      = {Nat.},
  volume       = {578},
  number       = {7793},
  pages        = {102--111},
  year         = {2020},
  url          = {https://doi.org/10.1038/s41586-020-1965-x},
  doi          = {10.1038/S41586-020-1965-X},
  timestamp    = {Thu, 11 May 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nature/RheinbayNAWSTHH20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nature/CalabreseDDFHKL20,
  author       = {Claudia Calabrese and
                  Natalie R. Davidson and
                  Deniz Demircioglu and
                  Nuno A. Fonseca and
                  Yao He and
                  Andr{\'{e}} Kahles and
                  Kjong{-}Van Lehmann and
                  Fenglin Liu and
                  Yuichi Shiraishi and
                  Cameron M. Soulette and
                  Lara Urban and
                  Liliana Greger and
                  Siliang Li and
                  Dongbing Liu and
                  Marc D. Perry and
                  Qian Xiang and
                  Fan Zhang and
                  Junjun Zhang and
                  Peter Bailey and
                  Serap Erkek and
                  Katherine A. Hoadley and
                  Yong Hou and
                  Matthew R. Huska and
                  Helena Kilpinen and
                  Jan O. Korbel and
                  Maximillian G. Marin and
                  Julia Markowski and
                  Tannistha Nandi and
                  Qiang Pan{-}Hammarstr{\"{o}}m and
                  Chandra Sekhar Pedamallu and
                  Reiner Siebert and
                  Stefan G. Stark and
                  Hong Su and
                  Patrick Tan and
                  Sebastian M. Waszak and
                  Christina K. Yung and
                  Shida Zhu and
                  Philip Awadalla and
                  Matthew Meyerson and
                  B. F. Francis Ouellette and
                  Kui Wu and
                  Huanming Yang and
                  Samirkumar B. Amin and
                  Aur{\'{e}}lien Chateigner and
                  Isidro Cort{\'{e}}s{-}Ciriano and
                  Brian Craft and
                  Milana Frenkel{-}Morgenstern and
                  Mary Goldman and
                  Ekta Khurana and
                  Fabien C. Lamaze and
                  Chang Li and
                  Xiaobo Li and
                  Xinyue Li and
                  Xingmin Liu and
                  Morten Muhlig Nielsen and
                  Akinyemi I. Ojesina and
                  Peter J. Park and
                  Jakob Skou Pedersen and
                  Bin Tean Teh and
                  Jian Wang and
                  Heng Xiong and
                  Sergei Yakneen and
                  Chen Ye and
                  Xiuqing Zhang and
                  Liangtao Zheng and
                  Jingchun Zhu and
                  Chad Creighton and
                  Jonathan G{\"{o}}ke and
                  Roland F. Schwarz and
                  Oliver Stegle and
                  Zemin Zhang and
                  Alvis Brazma and
                  Gunnar R{\"{a}}tsch and
                  Angela N. Brooks},
  title        = {Genomic basis for {RNA} alterations in cancer},
  journal      = {Nat.},
  volume       = {578},
  number       = {7793},
  pages        = {129--136},
  year         = {2020},
  url          = {https://doi.org/10.1038/s41586-020-1970-0},
  doi          = {10.1038/S41586-020-1970-0},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nature/CalabreseDDFHKL20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AtharFGIHASFPPS19,
  author       = {Awais Athar and
                  Anja F{\"{u}}llgrabe and
                  Nancy George and
                  Haider Iqbal and
                  Laura Huerta and
                  Ahmed Ali and
                  Catherine Snow and
                  Nuno A. Fonseca and
                  Robert Petryszak and
                  Irene Papatheodorou and
                  Ugis Sarkans and
                  Alvis Brazma},
  title        = {ArrayExpress update - from bulk to single-cell expression data},
  journal      = {Nucleic Acids Res.},
  volume       = {47},
  number       = {Database-Issue},
  pages        = {D711--D715},
  year         = {2019},
  url          = {https://doi.org/10.1093/nar/gky964},
  doi          = {10.1093/NAR/GKY964},
  timestamp    = {Sat, 30 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/AtharFGIHASFPPS19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Tello-RuizNSGCO18,
  author       = {Marcela K. Tello{-}Ruiz and
                  Sushma Naithani and
                  Joshua C. Stein and
                  Parul Gupta and
                  Michael Campbell and
                  Andrew Olson and
                  Sharon Wei and
                  Justin Preece and
                  Matthew J. Geniza and
                  Yinping Jiao and
                  Young Koung Lee and
                  Bo Wang and
                  Joseph Mulvaney and
                  Kapeel Chougule and
                  Justin Elser and
                  Noor Al{-}Bader and
                  Sunita Kumari and
                  James Thomason and
                  Vivek Kumar and
                  Daniel M. Bolser and
                  Guy Naamati and
                  Electra Tapanari and
                  Nuno A. Fonseca and
                  Laura Huerta and
                  Haider Iqbal and
                  Maria Keays and
                  Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
                  Y. Amy Tang and
                  Antonio Fabregat and
                  Peter D'Eustachio and
                  Joel Weiser and
                  Lincoln D. Stein and
                  Robert Petryszak and
                  Irene Papatheodorou and
                  Paul J. Kersey and
                  Patti Lockhart and
                  Crispin Taylor and
                  Pankaj Jaiswal and
                  Doreen Ware},
  title        = {Gramene 2018: unifying comparative genomics and pathway resources
                  for plant research},
  journal      = {Nucleic Acids Res.},
  volume       = {46},
  number       = {Database-Issue},
  pages        = {D1181--D1189},
  year         = {2018},
  url          = {https://doi.org/10.1093/nar/gkx1111},
  doi          = {10.1093/NAR/GKX1111},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/Tello-RuizNSGCO18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PapatheodorouFK18,
  author       = {Irene Papatheodorou and
                  Nuno A. Fonseca and
                  Maria Keays and
                  Y. Amy Tang and
                  Elisabet Barrera and
                  Wojciech Bazant and
                  Melissa L. Burke and
                  Anja F{\"{u}}llgrabe and
                  Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
                  Nancy George and
                  Laura Huerta and
                  Satu Koskinen and
                  Suhaib Mohammed and
                  Matthew J. Geniza and
                  Justin Preece and
                  Pankaj Jaiswal and
                  Andrew F. Jarnuczak and
                  Wolfgang Huber and
                  Oliver Stegle and
                  Juan Antonio Vizca{\'{\i}}no and
                  Alvis Brazma and
                  Robert Petryszak},
  title        = {Expression Atlas: gene and protein expression across multiple studies
                  and organisms},
  journal      = {Nucleic Acids Res.},
  volume       = {46},
  number       = {Database-Issue},
  pages        = {D246--D251},
  year         = {2018},
  url          = {https://doi.org/10.1093/nar/gkx1158},
  doi          = {10.1093/NAR/GKX1158},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PapatheodorouFK18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/PetryszakFFHKTB17,
  author       = {Robert Petryszak and
                  Nuno A. Fonseca and
                  Anja F{\"{u}}llgrabe and
                  Laura Huerta and
                  Maria Keays and
                  Y. Amy Tang and
                  Alvis Brazma},
  title        = {The RNASeq-er {API} - a gateway to systematically updated analysis
                  of public RNA-seq data},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {14},
  pages        = {2218--2220},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btx143},
  doi          = {10.1093/BIOINFORMATICS/BTX143},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/PetryszakFFHKTB17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pacbb/CavadasFCFP17,
  author       = {Bruno Cavadas and
                  Joana Ferreira and
                  Rui Camacho and
                  Nuno A. Fonseca and
                  Lu{\'{\i}}sa Pereira},
  editor       = {Florentino Fdez{-}Riverola and
                  Mohd Saberi Mohamad and
                  Miguel P. Rocha and
                  Juan F. De Paz and
                  Tiago Pinto},
  title        = {QmihR: Pipeline for Quantification of Microbiome in Human RNA-seq},
  booktitle    = {11th International Conference on Practical Applications of Computational
                  Biology {\&} Bioinformatics, {PACBB} 2017, Porto, Portugal, 21-23
                  June, 2017},
  series       = {Advances in Intelligent Systems and Computing},
  volume       = {616},
  pages        = {173--179},
  publisher    = {Springer},
  year         = {2017},
  url          = {https://doi.org/10.1007/978-3-319-60816-7\_21},
  doi          = {10.1007/978-3-319-60816-7\_21},
  timestamp    = {Wed, 12 Oct 2022 08:58:54 +0200},
  biburl       = {https://dblp.org/rec/conf/pacbb/CavadasFCFP17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PetryszakKTFBBF16,
  author       = {Robert Petryszak and
                  Maria Keays and
                  Y. Amy Tang and
                  Nuno A. Fonseca and
                  Elisabet Barrera and
                  Tony Burdett and
                  Anja F{\"{u}}llgrabe and
                  Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
                  Simon Jupp and
                  Satu Koskinen and
                  Oliver Mannion and
                  Laura Huerta and
                  Karine Megy and
                  Catherine Snow and
                  Eleanor Williams and
                  Mitra Barzine and
                  Emma Hastings and
                  Hendrik Weisser and
                  James C. Wright and
                  Pankaj Jaiswal and
                  Wolfgang Huber and
                  Jyoti Choudhary and
                  Helen E. Parkinson and
                  Alvis Brazma},
  title        = {Expression Atlas update - an integrated database of gene and protein
                  expression in humans, animals and plants},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Database-Issue},
  pages        = {746--752},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkv1045},
  doi          = {10.1093/NAR/GKV1045},
  timestamp    = {Tue, 26 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PetryszakKTFBBF16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/Tello-RuizSWPON16,
  author       = {Marcela K. Tello{-}Ruiz and
                  Joshua C. Stein and
                  Sharon Wei and
                  Justin Preece and
                  Andrew Olson and
                  Sushma Naithani and
                  Vindhya Amarasinghe and
                  Palitha Dharmawardhana and
                  Yinping Jiao and
                  Joseph Mulvaney and
                  Sunita Kumari and
                  Kapeel Chougule and
                  Justin Elser and
                  Bo Wang and
                  James Thomason and
                  Daniel M. Bolser and
                  Arnaud Kerhornou and
                  Brandon Walts and
                  Nuno A. Fonseca and
                  Laura Huerta and
                  Maria Keays and
                  Y. Amy Tang and
                  Helen E. Parkinson and
                  Antonio Fabregat and
                  Sheldon J. McKay and
                  Joel Weiser and
                  Peter D'Eustachio and
                  Lincoln Stein and
                  Robert Petryszak and
                  Paul J. Kersey and
                  Pankaj Jaiswal and
                  Doreen Ware},
  title        = {Gramene 2016: comparative plant genomics and pathway resources},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Database-Issue},
  pages        = {1133--1140},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkv1179},
  doi          = {10.1093/NAR/GKV1179},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/Tello-RuizSWPON16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:series/ccn/CamachoBSLFC16,
  author       = {Rui Camacho and
                  Jorge G. Barbosa and
                  Altino M. Sampaio and
                  Jo{\~{a}}o Ladeiras and
                  Nuno A. Fonseca and
                  V{\'{\i}}tor Santos Costa},
  editor       = {Florin Pop and
                  Joanna Kolodziej and
                  Beniamino Di Martino},
  title        = {Parallel Algorithms for Multirelational Data Mining: Application to
                  Life Science Problems},
  booktitle    = {Resource Management for Big Data Platforms - Algorithms, Modelling,
                  and High-Performance Computing Techniques},
  series       = {Computer Communications and Networks},
  pages        = {339--363},
  publisher    = {Springer},
  year         = {2016},
  url          = {https://doi.org/10.1007/978-3-319-44881-7\_16},
  doi          = {10.1007/978-3-319-44881-7\_16},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/series/ccn/CamachoBSLFC16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijdmb/FerreiraFDWB15,
  author       = {Pedro Ferreira and
                  Nuno A. Fonseca and
                  In{\^{e}}s de Castro Dutra and
                  Ryan W. Woods and
                  Elizabeth S. Burnside},
  title        = {Predicting malignancy from mammography findings and image-guided core
                  biopsies},
  journal      = {Int. J. Data Min. Bioinform.},
  volume       = {11},
  number       = {3},
  pages        = {257--276},
  year         = {2015},
  url          = {https://doi.org/10.1504/IJDMB.2015.067319},
  doi          = {10.1504/IJDMB.2015.067319},
  timestamp    = {Mon, 11 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ijdmb/FerreiraFDWB15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PetryszakBFFGHHJKKMMMMRTTWMPB14,
  author       = {Robert Petryszak and
                  Tony Burdett and
                  Benedetto Fiorelli and
                  Nuno A. Fonseca and
                  Mar Gonzalez{-}Porta and
                  Emma Hastings and
                  Wolfgang Huber and
                  Simon Jupp and
                  Maria Keays and
                  Nataliya Kryvych and
                  Julie A. McMurry and
                  John C. Marioni and
                  James Malone and
                  Karine Megy and
                  Gabriella Rustici and
                  Y. Amy Tang and
                  Jan Taubert and
                  Eleanor Williams and
                  Oliver Mannion and
                  Helen E. Parkinson and
                  Alvis Brazma},
  title        = {Expression Atlas update - a database of gene and transcript expression
                  from microarray- and sequencing-based functional genomics experiments},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Database-Issue},
  pages        = {926--932},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gkt1270},
  doi          = {10.1093/NAR/GKT1270},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/PetryszakBFFGHHJKKMMMMRTTWMPB14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/LoureiroCVF13,
  author       = {Tiago Loureiro and
                  Rui Camacho and
                  Jorge Vieira and
                  Nuno A. Fonseca},
  title        = {Improving the performance of Transposable Elements detection tools},
  journal      = {J. Integr. Bioinform.},
  volume       = {10},
  number       = {3},
  year         = {2013},
  url          = {https://doi.org/10.2390/biecoll-jib-2013-231},
  doi          = {10.2390/BIECOLL-JIB-2013-231},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/jib/LoureiroCVF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ilp/CamachoRF13,
  author       = {Rui Camacho and
                  Ruy Ramos and
                  Nuno A. Fonseca},
  editor       = {Gerson Zaverucha and
                  V{\'{\i}}tor Santos Costa and
                  Aline Paes},
  title        = {{AND} Parallelism for {ILP:} The {APIS} System},
  booktitle    = {Inductive Logic Programming - 23rd International Conference, {ILP}
                  2013, Rio de Janeiro, Brazil, August 28-30, 2013, Revised Selected
                  Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {8812},
  pages        = {93--106},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-662-44923-3\_7},
  doi          = {10.1007/978-3-662-44923-3\_7},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ilp/CamachoRF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pacbb/LoureiroCVF13,
  author       = {Tiago Loureiro and
                  Rui Camacho and
                  Jorge Vieira and
                  Nuno A. Fonseca},
  editor       = {Mohd Saberi Mohamad and
                  Loris Nanni and
                  Miguel P. Rocha and
                  Florentino Fdez{-}Riverola},
  title        = {Boosting the Detection of Transposable Elements Using Machine Learning},
  booktitle    = {7th International Conference on Practical Applications of Computational
                  Biology {\&} Bioinformatics, {PACBB} 2013, 22-14 May, 2013, Salamanca,
                  Spain},
  series       = {Advances in Intelligent Systems and Computing},
  volume       = {222},
  pages        = {85--91},
  publisher    = {Springer},
  year         = {2013},
  url          = {https://doi.org/10.1007/978-3-319-00578-2\_12},
  doi          = {10.1007/978-3-319-00578-2\_12},
  timestamp    = {Wed, 12 Oct 2022 08:58:54 +0200},
  biburl       = {https://dblp.org/rec/conf/pacbb/LoureiroCVF13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/FonsecaRBM12,
  author       = {Nuno A. Fonseca and
                  Johan Rung and
                  Alvis Brazma and
                  John C. Marioni},
  title        = {Tools for mapping high-throughput sequencing data},
  journal      = {Bioinform.},
  volume       = {28},
  number       = {24},
  pages        = {3169--3177},
  year         = {2012},
  url          = {https://doi.org/10.1093/bioinformatics/bts605},
  doi          = {10.1093/BIOINFORMATICS/BTS605},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/FonsecaRBM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijdmb/CamachoFRGFCSM12,
  author       = {Rui Camacho and
                  Rita Ferreira and
                  Natacha Rosa and
                  V{\^{a}}nia Guimar{\~{a}}es and
                  Nuno A. Fonseca and
                  V{\'{\i}}tor Santos Costa and
                  Miguel de Sousa and
                  Alexandre Magalh{\~{a}}es},
  title        = {Predicting the secondary structure of proteins using machine learning
                  algorithms},
  journal      = {Int. J. Data Min. Bioinform.},
  volume       = {6},
  number       = {6},
  pages        = {571--584},
  year         = {2012},
  url          = {https://doi.org/10.1504/IJDMB.2012.050265},
  doi          = {10.1504/IJDMB.2012.050265},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ijdmb/CamachoFRGFCSM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/Reboiro-JatoRFVFV12,
  author       = {David Reboiro{-}Jato and
                  Miguel Reboiro{-}Jato and
                  Florentino Fdez{-}Riverola and
                  Cristina P. Vieira and
                  Nuno A. Fonseca and
                  Jorge Vieira},
  title        = {{ADOPS} - Automatic Detection Of Positively Selected Sites},
  journal      = {J. Integr. Bioinform.},
  volume       = {9},
  number       = {3},
  year         = {2012},
  url          = {https://doi.org/10.2390/biecoll-jib-2012-200},
  doi          = {10.2390/BIECOLL-JIB-2012-200},
  timestamp    = {Tue, 14 Jul 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jib/Reboiro-JatoRFVFV12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pacbb/Reboiro-JatoRFFV12,
  author       = {David Reboiro{-}Jato and
                  Miguel Reboiro{-}Jato and
                  Florentino Fdez{-}Riverola and
                  Nuno A. Fonseca and
                  Jorge Vieira},
  editor       = {Miguel P. Rocha and
                  Nicholas M. Luscombe and
                  Florentino Fdez{-}Riverola and
                  Juan M. Corchado Rodr{\'{\i}}guez},
  title        = {On the Development of a Pipeline for the Automatic Detection of Positively
                  Selected Sites},
  booktitle    = {6th International Conference on Practical Applications of Computational
                  Biology {\&} Bioinformatics, Salamanca, Spain},
  series       = {Advances in Intelligent and Soft Computing},
  volume       = {154},
  pages        = {225--229},
  publisher    = {Springer},
  year         = {2012},
  url          = {https://doi.org/10.1007/978-3-642-28839-5\_26},
  doi          = {10.1007/978-3-642-28839-5\_26},
  timestamp    = {Wed, 12 Oct 2022 08:58:54 +0200},
  biburl       = {https://dblp.org/rec/conf/pacbb/Reboiro-JatoRFFV12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jib/CamachoPCFGSB11,
  author       = {Rui Camacho and
                  Max Pereira and
                  V{\'{\i}}tor Santos Costa and
                  Nuno A. Fonseca and
                  Carlos Adriano Gon{\c{c}}alves and
                  Carlos J. V. Sim{\~{o}}es and
                  Rui M. M. Brito},
  title        = {A Relational Learning Approach to Structure-Activity Relationships
                  in Drug Design Toxicity Studies},
  journal      = {J. Integr. Bioinform.},
  volume       = {8},
  number       = {3},
  year         = {2011},
  url          = {https://doi.org/10.2390/biecoll-jib-2011-182},
  doi          = {10.2390/BIECOLL-JIB-2011-182},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jib/CamachoPCFGSB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/FerreiraFDWB11,
  author       = {Pedro Ferreira and
                  Nuno A. Fonseca and
                  In{\^{e}}s de Castro Dutra and
                  Ryan W. Woods and
                  Elizabeth S. Burnside},
  editor       = {Fang{-}Xiang Wu and
                  Mohammed Javeed Zaki and
                  Shinichi Morishita and
                  Yi Pan and
                  Stephen Wong and
                  Anastasia Christianson and
                  Xiaohua Hu},
  title        = {Predicting Malignancy from Mammography Findings and Surgical Biopsies},
  booktitle    = {{IEEE} International Conference on Bioinformatics and Biomedicine,
                  {BIBM} 2011, Atlanta, GA, USA, November 12-15, , 2011},
  pages        = {339--344},
  publisher    = {{IEEE} Computer Society},
  year         = {2011},
  url          = {https://doi.org/10.1109/BIBM.2011.71},
  doi          = {10.1109/BIBM.2011.71},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bibm/FerreiraFDWB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biostec/FerreiraDFWB11,
  author       = {Pedro Ferreira and
                  In{\^{e}}s de Castro Dutra and
                  Nuno A. Fonseca and
                  Ryan W. Woods and
                  Elizabeth S. Burnside},
  editor       = {Vicente Traver and
                  Ana L. N. Fred and
                  Joaquim Filipe and
                  Hugo Gamboa},
  title        = {Studying the Relevance of Breast Imaging Features},
  booktitle    = {{HEALTHINF} 2011 - Proceedings of the International Conference on
                  Health Informatics, Rome, Italy, 26-29 January, 2011},
  pages        = {337--342},
  publisher    = {SciTePress},
  year         = {2011},
  timestamp    = {Tue, 18 Oct 2022 21:16:17 +0200},
  biburl       = {https://dblp.org/rec/conf/biostec/FerreiraDFWB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ilp/FonsecaCC12,
  author       = {Nuno A. Fonseca and
                  V{\'{\i}}tor Santos Costa and
                  Rui Camacho},
  editor       = {Stephen H. Muggleton and
                  Alireza Tamaddoni{-}Nezhad and
                  Francesca A. Lisi},
  title        = {Conceptual Clustering of Multi-Relational Data},
  booktitle    = {Inductive Logic Programming - 21st International Conference, {ILP}
                  2011, Windsor Great Park, UK, July 31 - August 3, 2011, Revised Selected
                  Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {7207},
  pages        = {145--159},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-31951-8\_16},
  doi          = {10.1007/978-3-642-31951-8\_16},
  timestamp    = {Sat, 30 Apr 2022 12:43:31 +0200},
  biburl       = {https://dblp.org/rec/conf/ilp/FonsecaCC12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pacbb/CamachoPCFSB11,
  author       = {Rui Camacho and
                  Max Pereira and
                  V{\'{\i}}tor Santos Costa and
                  Nuno A. Fonseca and
                  Carlos J. V. Sim{\~{o}}es and
                  Rui M. M. Brito},
  editor       = {Miguel P. Rocha and
                  Juan M. Corchado Rodr{\'{\i}}guez and
                  Florentino Fdez{-}Riverola and
                  Alfonso Valencia},
  title        = {Assessing the Effect of 2D Fingerprint Filtering on ILP-Based Structure-Activity
                  Relationships Toxicity Studies in Drug Design},
  booktitle    = {5th International Conference on Practical Applications of Computational
                  Biology {\&} Bioinformatics, {PACBB} 2011, April 6-8, 2011, Salamanca,
                  Spain},
  series       = {Advances in Intelligent and Soft Computing},
  volume       = {93},
  pages        = {355--363},
  publisher    = {Springer},
  year         = {2011},
  url          = {https://doi.org/10.1007/978-3-642-19914-1\_46},
  doi          = {10.1007/978-3-642-19914-1\_46},
  timestamp    = {Wed, 12 Oct 2022 08:58:54 +0200},
  biburl       = {https://dblp.org/rec/conf/pacbb/CamachoPCFSB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ilp/FonsecaPCC10,
  author       = {Nuno A. Fonseca and
                  Max Pereira and
                  V{\'{\i}}tor Santos Costa and
                  Rui Camacho},
  editor       = {Paolo Frasconi and
                  Francesca A. Lisi},
  title        = {Interactive Discriminative Mining of Chemical Fragments},
  booktitle    = {Inductive Logic Programming - 20th International Conference, {ILP}
                  2010, Florence, Italy, June 27-30, 2010. Revised Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {6489},
  pages        = {59--66},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-3-642-21295-6\_10},
  doi          = {10.1007/978-3-642-21295-6\_10},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ilp/FonsecaPCC10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isami/CamachoFRGFCSM10,
  author       = {Rui Camacho and
                  Rita Ferreira and
                  Natacha Rosa and
                  V{\^{a}}nia Guimar{\~{a}}es and
                  Nuno A. Fonseca and
                  V{\'{\i}}tor Santos Costa and
                  Miguel de Sousa and
                  Alexandre Magalh{\~{a}}es},
  editor       = {Miguel P. Rocha and
                  Florentino Fern{\'{a}}ndez Riverola and
                  Hagit Shatkay and
                  Juan M. Corchado},
  title        = {Predicting the Start of Protein \emph{alpha}-Helices Using Machine
                  Learning Algorithms},
  booktitle    = {Advances in Bioinformatics - 4th International Workshop on Practical
                  Applications of Computational Biology and Bioinformatics 2010 {(IWPACBB}
                  2010), Guimar{\~{a}}es, Portugal, 16-18 June 2010},
  series       = {Advances in Intelligent and Soft Computing},
  volume       = {74},
  pages        = {33--41},
  publisher    = {Springer},
  year         = {2010},
  url          = {https://doi.org/10.1007/978-3-642-13214-8\_5},
  doi          = {10.1007/978-3-642-13214-8\_5},
  timestamp    = {Wed, 12 Oct 2022 08:58:53 +0200},
  biburl       = {https://dblp.org/rec/conf/isami/CamachoFRGFCSM10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ml/FonsecaSSC09,
  author       = {Nuno A. Fonseca and
                  Ashwin Srinivasan and
                  Fernando M. A. Silva and
                  Rui Camacho},
  title        = {Parallel {ILP} for distributed-memory architectures},
  journal      = {Mach. Learn.},
  volume       = {74},
  number       = {3},
  pages        = {257--279},
  year         = {2009},
  url          = {https://doi.org/10.1007/s10994-008-5094-2},
  doi          = {10.1007/S10994-008-5094-2},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/ml/FonsecaSSC09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/spe/FonsecaCRCS09,
  author       = {Nuno A. Fonseca and
                  V{\'{\i}}tor Santos Costa and
                  Ricardo Rocha and
                  Rui Camacho and
                  Fernando M. A. Silva},
  title        = {Improving the efficiency of inductive logic programming systems},
  journal      = {Softw. Pract. Exp.},
  volume       = {39},
  number       = {2},
  pages        = {189--219},
  year         = {2009},
  url          = {https://doi.org/10.1002/spe.896},
  doi          = {10.1002/SPE.896},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/spe/FonsecaCRCS09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwann/FonsecaCCVV09,
  author       = {Nuno A. Fonseca and
                  V{\'{\i}}tor Santos Costa and
                  Rui Camacho and
                  Cristina P. Vieira and
                  Jorge Vieira},
  editor       = {Sigeru Omatu and
                  Miguel Rocha and
                  Jos{\'{e}} Bravo and
                  Florentino Fern{\'{a}}ndez Riverola and
                  Emilio Corchado and
                  Andr{\'{e}}s Bustillo and
                  Juan M. Corchado},
  title        = {Partitional Clustering of Protein Sequences - An Inductive Logic Programming
                  Approach},
  booktitle    = {Distributed Computing, Artificial Intelligence, Bioinformatics, Soft
                  Computing, and Ambient Assisted Living, 10th International Work-Conference
                  on Artificial Neural Networks, {IWANN} 2009 Workshops, Salamanca,
                  Spain, June 10-12, 2009. Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {5518},
  pages        = {1001--1004},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-02481-8\_152},
  doi          = {10.1007/978-3-642-02481-8\_152},
  timestamp    = {Tue, 15 Nov 2022 15:22:37 +0100},
  biburl       = {https://dblp.org/rec/conf/iwann/FonsecaCCVV09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwann/PereiraCCF09,
  author       = {Max Pereira and
                  V{\'{\i}}tor Santos Costa and
                  Rui Camacho and
                  Nuno A. Fonseca},
  editor       = {Sigeru Omatu and
                  Miguel Rocha and
                  Jos{\'{e}} Bravo and
                  Florentino Fern{\'{a}}ndez Riverola and
                  Emilio Corchado and
                  Andr{\'{e}}s Bustillo and
                  Juan M. Corchado},
  title        = {Visually Guiding and Controlling the Search While Mining Chemical
                  Structures},
  booktitle    = {Distributed Computing, Artificial Intelligence, Bioinformatics, Soft
                  Computing, and Ambient Assisted Living, 10th International Work-Conference
                  on Artificial Neural Networks, {IWANN} 2009 Workshops, Salamanca,
                  Spain, June 10-12, 2009. Proceedings, Part {II}},
  series       = {Lecture Notes in Computer Science},
  volume       = {5518},
  pages        = {1043--1046},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-02481-8\_158},
  doi          = {10.1007/978-3-642-02481-8\_158},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/iwann/PereiraCCF09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wob/PereiraCCFSB09,
  author       = {Max Pereira and
                  V{\'{\i}}tor Santos Costa and
                  Rui Camacho and
                  Nuno A. Fonseca and
                  Carlos J. V. Sim{\~{o}}es and
                  Rui M. M. Brito},
  editor       = {Katia S. Guimar{\~{a}}es and
                  Anna R. Panchenko and
                  Teresa M. Przytycka},
  title        = {Comparative Study of Classification Algorithms Using Molecular Descriptors
                  in Toxicological DataBases},
  booktitle    = {Advances in Bioinformatics and Computational Biology, 4th Brazilian
                  Symposium on Bioinformatics, {BSB} 2009, Porto Alegre, Brazil, July
                  29-31, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5676},
  pages        = {121--132},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-03223-3\_11},
  doi          = {10.1007/978-3-642-03223-3\_11},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/wob/PereiraCCFSB09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fuin/FonsecaCRC08,
  author       = {Nuno A. Fonseca and
                  Rui Camacho and
                  Ricardo Rocha and
                  V{\'{\i}}tor Santos Costa},
  title        = {Compile the Hypothesis Space: Do it Once, Use it Often},
  journal      = {Fundam. Informaticae},
  volume       = {89},
  number       = {1},
  pages        = {45--67},
  year         = {2008},
  url          = {http://content.iospress.com/articles/fundamenta-informaticae/fi89-1-04},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/fuin/FonsecaCRC08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/CostaFC08,
  author       = {V{\'{\i}}tor Santos Costa and
                  Nuno A. Fonseca and
                  Rui Camacho},
  editor       = {Xue{-}wen Chen and
                  Xiaohua Hu and
                  Sun Kim},
  title        = {LogCHEM: Interactive Discriminative Mining of Chemical Structure},
  booktitle    = {2008 {IEEE} International Conference on Bioinformatics and Biomedicine,
                  {BIBM} 2008, Philadephia, Pennsylvania, USA, November 3-5, 2008},
  pages        = {421--426},
  publisher    = {{IEEE} Computer Society},
  year         = {2008},
  url          = {https://doi.org/10.1109/BIBM.2008.45},
  doi          = {10.1109/BIBM.2008.45},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bibm/CostaFC08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwpacbb/PereiraSF08,
  author       = {Pedro Pereira Rodrigues and
                  Fernando M. A. Silva and
                  Nuno A. Fonseca},
  editor       = {Juan M. Corchado and
                  Juan Francisco de Paz and
                  Miguel Rocha and
                  Florentino Fern{\'{a}}ndez Riverola},
  title        = {{BIORED} - {A} Genetic Algorithm for Pattern Detection in Biosequences},
  booktitle    = {2nd International Workshop on Practical Applications of Computational
                  Biology and Bioinformatics, {IWPACBB} 2008, Salamanca, Spain, 22th-24th
                  October 2008},
  series       = {Advances in Soft Computing},
  volume       = {49},
  pages        = {156--165},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-85861-4\_19},
  doi          = {10.1007/978-3-540-85861-4\_19},
  timestamp    = {Wed, 12 Oct 2022 08:58:53 +0200},
  biburl       = {https://dblp.org/rec/conf/iwpacbb/PereiraSF08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sac/FonsecaCC08,
  author       = {Nuno A. Fonseca and
                  V{\'{\i}}tor Santos Costa and
                  Rui Camacho},
  editor       = {Roger L. Wainwright and
                  Hisham Haddad},
  title        = {k-RNN: k-relational nearest neighbour algorithm},
  booktitle    = {Proceedings of the 2008 {ACM} Symposium on Applied Computing (SAC),
                  Fortaleza, Ceara, Brazil, March 16-20, 2008},
  pages        = {944--948},
  publisher    = {{ACM}},
  year         = {2008},
  url          = {https://doi.org/10.1145/1363686.1363901},
  doi          = {10.1145/1363686.1363901},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/sac/FonsecaCC08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ilp/CamachoFRC07,
  author       = {Rui Camacho and
                  Nuno A. Fonseca and
                  Ricardo Rocha and
                  V{\'{\i}}tor Santos Costa},
  editor       = {Hendrik Blockeel and
                  Jan Ramon and
                  Jude W. Shavlik and
                  Prasad Tadepalli},
  title        = {{ILP} : - Just Trie It},
  booktitle    = {Inductive Logic Programming, 17th International Conference, {ILP}
                  2007, Corvallis, OR, USA, June 19-21, 2007, Revised Selected Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {4894},
  pages        = {78--87},
  publisher    = {Springer},
  year         = {2007},
  url          = {https://doi.org/10.1007/978-3-540-78469-2\_11},
  doi          = {10.1007/978-3-540-78469-2\_11},
  timestamp    = {Thu, 14 Oct 2021 10:29:24 +0200},
  biburl       = {https://dblp.org/rec/conf/ilp/CamachoFRC07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ilp/FerreiraFRS06,
  author       = {Michel Ferreira and
                  Nuno A. Fonseca and
                  Ricardo Rocha and
                  Tiago Soares},
  editor       = {Stephen H. Muggleton and
                  Ram{\'{o}}n P. Otero and
                  Alireza Tamaddoni{-}Nezhad},
  title        = {Efficient and Scalable Induction of Logic Programs Using a Deductive
                  Database System},
  booktitle    = {Inductive Logic Programming, 16th International Conference, {ILP}
                  2006, Santiago de Compostela, Spain, August 24-27, 2006, Revised Selected
                  Papers},
  series       = {Lecture Notes in Computer Science},
  volume       = {4455},
  pages        = {184--198},
  publisher    = {Springer},
  year         = {2006},
  url          = {https://doi.org/10.1007/978-3-540-73847-3\_22},
  doi          = {10.1007/978-3-540-73847-3\_22},
  timestamp    = {Sat, 30 Apr 2022 12:43:31 +0200},
  biburl       = {https://dblp.org/rec/conf/ilp/FerreiraFRS06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/jelia/FonsecaSC06,
  author       = {Nuno A. Fonseca and
                  Fernando M. A. Silva and
                  Rui Camacho},
  editor       = {Michael Fisher and
                  Wiebe van der Hoek and
                  Boris Konev and
                  Alexei Lisitsa},
  title        = {April - An Inductive Logic Programming System},
  booktitle    = {Logics in Artificial Intelligence, 10th European Conference, {JELIA}
                  2006, Liverpool, UK, September 13-15, 2006, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {4160},
  pages        = {481--484},
  publisher    = {Springer},
  year         = {2006},
  url          = {https://doi.org/10.1007/11853886\_42},
  doi          = {10.1007/11853886\_42},
  timestamp    = {Fri, 03 Jun 2022 08:18:13 +0200},
  biburl       = {https://dblp.org/rec/conf/jelia/FonsecaSC06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/FonsecaSCC05,
  author       = {Nuno A. Fonseca and
                  Fernando M. A. Silva and
                  V{\'{\i}}tor Santos Costa and
                  Rui Camacho},
  title        = {A pipelined data-parallel algorithm for {ILP}},
  booktitle    = {2005 {IEEE} International Conference on Cluster Computing {(CLUSTER}
                  2005), September 26 - 30, 2005, Boston, Massachusetts, {USA}},
  pages        = {1--10},
  publisher    = {{IEEE} Computer Society},
  year         = {2005},
  url          = {https://doi.org/10.1109/CLUSTR.2005.347059},
  doi          = {10.1109/CLUSTR.2005.347059},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/cluster/FonsecaSCC05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ecml/RochaFC05,
  author       = {Ricardo Rocha and
                  Nuno A. Fonseca and
                  V{\'{\i}}tor Santos Costa},
  editor       = {Jo{\~{a}}o Gama and
                  Rui Camacho and
                  Pavel Brazdil and
                  Al{\'{\i}}pio Jorge and
                  Lu{\'{\i}}s Torgo},
  title        = {On Applying Tabling to Inductive Logic Programming},
  booktitle    = {Machine Learning: {ECML} 2005, 16th European Conference on Machine
                  Learning, Porto, Portugal, October 3-7, 2005, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3720},
  pages        = {707--714},
  publisher    = {Springer},
  year         = {2005},
  url          = {https://doi.org/10.1007/11564096\_72},
  doi          = {10.1007/11564096\_72},
  timestamp    = {Wed, 24 Mar 2021 17:12:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ecml/RochaFC05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ilp/FonsecaSC05,
  author       = {Nuno A. Fonseca and
                  Fernando M. A. Silva and
                  Rui Camacho},
  editor       = {Stefan Kramer and
                  Bernhard Pfahringer},
  title        = {Strategies to Parallelize {ILP} Systems},
  booktitle    = {Inductive Logic Programming, 15th International Conference, {ILP}
                  2005, Bonn, Germany, August 10-13, 2005, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3625},
  pages        = {136--153},
  publisher    = {Springer},
  year         = {2005},
  url          = {https://doi.org/10.1007/11536314\_9},
  doi          = {10.1007/11536314\_9},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ilp/FonsecaSC05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ilp/FonsecaCSC04,
  author       = {Nuno A. Fonseca and
                  V{\'{\i}}tor Santos Costa and
                  Fernando M. A. Silva and
                  Rui Camacho},
  editor       = {Rui Camacho and
                  Ross D. King and
                  Ashwin Srinivasan},
  title        = {On Avoiding Redundancy in Inductive Logic Programming},
  booktitle    = {Inductive Logic Programming, 14th International Conference, {ILP}
                  2004, Porto, Portugal, September 6-8, 2004, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {3194},
  pages        = {132--146},
  publisher    = {Springer},
  year         = {2004},
  url          = {https://doi.org/10.1007/978-3-540-30109-7\_13},
  doi          = {10.1007/978-3-540-30109-7\_13},
  timestamp    = {Wed, 24 Mar 2021 17:12:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ilp/FonsecaCSC04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/epia/FonsecaCSC03,
  author       = {Nuno A. Fonseca and
                  V{\'{\i}}tor Santos Costa and
                  Fernando M. A. Silva and
                  Rui Camacho},
  editor       = {Fernando Moura{-}Pires and
                  Salvador Abreu},
  title        = {Experimental Evaluation of a Caching Technique for {ILP}},
  booktitle    = {Progress in Artificial Intelligence, 11th Protuguese Conference on
                  Artificial Intelligence, {EPIA} 2003, Beja, Portugal, December 4-7,
                  2003, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2902},
  pages        = {151--155},
  publisher    = {Springer},
  year         = {2003},
  url          = {https://doi.org/10.1007/978-3-540-24580-3\_22},
  doi          = {10.1007/978-3-540-24580-3\_22},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/epia/FonsecaCSC03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ilp/FonsecaRCS03,
  author       = {Nuno A. Fonseca and
                  Ricardo Rocha and
                  Rui Camacho and
                  Fernando M. A. Silva},
  editor       = {Tam{\'{a}}s Horv{\'{a}}th},
  title        = {Efficient Data Structures for Inductive Logic Programming},
  booktitle    = {Inductive Logic Programming: 13th International Conference, {ILP}
                  2003, Szeged, Hungary, September 29-October 1, 2003, Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {2835},
  pages        = {130--145},
  publisher    = {Springer},
  year         = {2003},
  url          = {https://doi.org/10.1007/978-3-540-39917-9\_10},
  doi          = {10.1007/978-3-540-39917-9\_10},
  timestamp    = {Wed, 24 Mar 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ilp/FonsecaRCS03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iclp/FonsecaCD98,
  author       = {Nuno A. Fonseca and
                  V{\'{\i}}tor Santos Costa and
                  In{\^{e}}s de Castro Dutra},
  editor       = {Joxan Jaffar},
  title        = {VisAll: {A} Universal Tool to Visualise Parallel Execution of Logic
                  Programs},
  booktitle    = {Proceedings of the 1998 Joint International Conference and Symposium
                  on Logic Programming, Manchester, UK, June 15-19, 1998},
  pages        = {100--114},
  publisher    = {{MIT} Press},
  year         = {1998},
  timestamp    = {Mon, 02 Dec 2013 17:40:44 +0100},
  biburl       = {https://dblp.org/rec/conf/iclp/FonsecaCD98.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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