BibTeX records: Koen Deforche

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@article{DBLP:journals/bioinformatics/CleemputDFKGADO20,
  author       = {Sara Cleemput and
                  Wim Dumon and
                  Vagner Fonseca and
                  Wasim Abdool Karim and
                  Marta Giovanetti and
                  Luiz Carlos Alcantara and
                  Koen Deforche and
                  Tulio de Oliveira},
  title        = {Genome Detective Coronavirus Typing Tool for rapid identification
                  and characterization of novel coronavirus genomes},
  journal      = {Bioinform.},
  volume       = {36},
  number       = {11},
  pages        = {3552--3555},
  year         = {2020},
  url          = {https://doi.org/10.1093/bioinformatics/btaa145},
  doi          = {10.1093/BIOINFORMATICS/BTAA145},
  timestamp    = {Fri, 14 May 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CleemputDFKGADO20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/VilskerMNFGDPAE19,
  author       = {Michael Vilsker and
                  Yumna Moosa and
                  Sam Nooij and
                  Vagner Fonseca and
                  Yoika Ghysens and
                  Korneel Dumon and
                  Raf Pauwels and
                  Luiz Carlos Alcantara and
                  Ewout Vanden Eynden and
                  Anne{-}Mieke Vandamme and
                  Koen Deforche and
                  Tulio de Oliveira},
  title        = {Genome Detective: an automated system for virus identification from
                  high-throughput sequencing data},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {5},
  pages        = {871--873},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/bty695},
  doi          = {10.1093/BIOINFORMATICS/BTY695},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/VilskerMNFGDPAE19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/LibinDAT19,
  author       = {Pieter J. K. Libin and
                  Koen Deforche and
                  Ana B. Abecasis and
                  Kristof Theys},
  title        = {{VIRULIGN:} fast codon-correct alignment and annotation of viral genomes},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {10},
  pages        = {1763--1765},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/bty851},
  doi          = {10.1093/BIOINFORMATICS/BTY851},
  timestamp    = {Mon, 15 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LibinDAT19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/LibinBDIFLTCCLTAWSRBLMWZKAPOAGSOPBCV13,
  author       = {Pieter Libin and
                  Gertjan Beheydt and
                  Koen Deforche and
                  Stijn Imbrechts and
                  Fossie Ferreira and
                  Kristel Van Laethem and
                  Kristof Theys and
                  Ana Patricia Carvalho and
                  Joana Cavaco{-}Silva and
                  Giuseppe Lapadula and
                  Carlo Torti and
                  Matthias Assel and
                  Stefan Wesner and
                  Joke Snoeck and
                  Jean Ruelle and
                  Annelies De Bel and
                  Patrick Lacor and
                  Paul De Munter and
                  Eric Van Wijngaerden and
                  Maurizio Zazzi and
                  Rolf Kaiser and
                  Ahidjo Ayouba and
                  Martine Peeters and
                  Tulio de Oliveira and
                  Luiz Carlos J{\'{u}}nior Alc{\^{a}}ntara and
                  Zehava Grossman and
                  Peter M. A. Sloot and
                  Dan Otelea and
                  Simona Paraschiv and
                  Charles A. Boucher and
                  Ricardo Camacho and
                  Anne{-}Mieke Vandamme},
  title        = {RegaDB: community-driven data management and analysis for infectious
                  diseases},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {11},
  pages        = {1477--1480},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt162},
  doi          = {10.1093/BIOINFORMATICS/BTT162},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/LibinBDIFLTCCLTAWSRBLMWZKAPOAGSOPBCV13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/TheysDBMLLCRSWV10,
  author       = {Kristof Theys and
                  Koen Deforche and
                  Gertjan Beheydt and
                  Yves Moreau and
                  Kristel Van Laethem and
                  Philippe Lemey and
                  Ricardo Camacho and
                  Soo{-}Yon Rhee and
                  Robert W. Shafer and
                  Eric Van Wijngaerden and
                  Anne{-}Mieke Vandamme},
  title        = {Estimating the individualized {HIV-1} genetic barrier to resistance
                  using a nelfinavir fitness landscape},
  journal      = {{BMC} Bioinform.},
  volume       = {11},
  pages        = {409},
  year         = {2010},
  url          = {https://doi.org/10.1186/1471-2105-11-409},
  doi          = {10.1186/1471-2105-11-409},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/TheysDBMLLCRSWV10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/AlcantaraCLDPRGVO09,
  author       = {Luiz Carlos J{\'{u}}nior Alc{\^{a}}ntara and
                  Sharon Cassol and
                  Pieter Libin and
                  Koen Deforche and
                  Oliver G. Pybus and
                  Marc Van Ranst and
                  Bernardo Galv{\~{a}}o{-}Castro and
                  Anne{-}Mieke Vandamme and
                  Tulio de Oliveira},
  title        = {A standardized framework for accurate, high-throughput genotyping
                  of recombinant and non-recombinant viral sequences},
  journal      = {Nucleic Acids Res.},
  volume       = {37},
  number       = {Web-Server-Issue},
  pages        = {634--642},
  year         = {2009},
  url          = {https://doi.org/10.1093/nar/gkp455},
  doi          = {10.1093/NAR/GKP455},
  timestamp    = {Sun, 12 Nov 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nar/AlcantaraCLDPRGVO09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/DeforcheCLLRMV08,
  author       = {Koen Deforche and
                  Ricardo Camacho and
                  Kristel Van Laethem and
                  Philippe Lemey and
                  Andrew Rambaut and
                  Yves Moreau and
                  Anne{-}Mieke Vandamme},
  title        = {Estimation of an \emph{in vivo} fitness landscape experienced by {HIV-1}
                  under drug selective pressure useful for prediction of drug resistance
                  evolution during treatment},
  journal      = {Bioinform.},
  volume       = {24},
  number       = {1},
  pages        = {34--41},
  year         = {2008},
  url          = {https://doi.org/10.1093/bioinformatics/btm540},
  doi          = {10.1093/BIOINFORMATICS/BTM540},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DeforcheCLLRMV08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/jcb/DeforcheCLSMRVL07,
  author       = {Koen Deforche and
                  Ricardo Camacho and
                  Kristel Van Laethem and
                  Beth Shapiro and
                  Yves Moreau and
                  Andrew Rambaut and
                  Anne{-}Mieke Vandamme and
                  Philippe Lemey},
  title        = {Estimating the Relative Contribution of dNTP Pool Imbalance and {APOBEC3G/3F}
                  Editing to {HIV} Evolution \emph{In Vivo}},
  journal      = {J. Comput. Biol.},
  volume       = {14},
  number       = {8},
  pages        = {1105--1114},
  year         = {2007},
  url          = {https://doi.org/10.1089/cmb.2007.0073},
  doi          = {10.1089/CMB.2007.0073},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcb/DeforcheCLSMRVL07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/DeforcheSCGSLKMV06,
  author       = {Koen Deforche and
                  Tomi Silander and
                  Ricardo Camacho and
                  Zehava Grossman and
                  M. A. Soares and
                  Kristel Van Laethem and
                  Rami Kantor and
                  Yves Moreau and
                  Anne{-}Mieke Vandamme},
  title        = {Analysis of {HIV-1} \emph{pol} sequences using Bayesian Networks:
                  implications for drug resistance},
  journal      = {Bioinform.},
  volume       = {22},
  number       = {24},
  pages        = {2975--2979},
  year         = {2006},
  url          = {https://doi.org/10.1093/bioinformatics/btl508},
  doi          = {10.1093/BIOINFORMATICS/BTL508},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/DeforcheSCGSLKMV06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/ParaskevisDLMHV05,
  author       = {Dimitris Paraskevis and
                  Koen Deforche and
                  Philippe Lemey and
                  Gkikas Magiorkinis and
                  Angelos Hatzakis and
                  Anne{-}Mieke Vandamme},
  title        = {SlidingBayes: exploring recombination using a sliding window approach
                  based on Bayesian phylogenetic inference},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {7},
  pages        = {1274--1275},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti139},
  doi          = {10.1093/BIOINFORMATICS/BTI139},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ParaskevisDLMHV05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/ValenteDCSPSSRWVBCV05,
  author       = {Tulio de Oliveira and
                  Koen Deforche and
                  Sharon Cassol and
                  Mika Salminen and
                  Dimitris Paraskevis and
                  Chris Seebregts and
                  Joke Snoeck and
                  Estrelita J. Janse van Rensburg and
                  Annemarie M. J. Wensing and
                  David A. van de Vijver and
                  Charles A. Boucher and
                  Ricardo Camacho and
                  Anne{-}Mieke Vandamme},
  title        = {An automated genotyping system for analysis of {HIV-1} and other microbial
                  sequences},
  journal      = {Bioinform.},
  volume       = {21},
  number       = {19},
  pages        = {3797--3800},
  year         = {2005},
  url          = {https://doi.org/10.1093/bioinformatics/bti607},
  doi          = {10.1093/BIOINFORMATICS/BTI607},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/ValenteDCSPSSRWVBCV05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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