BibTeX records: Ivan G. Costa

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@article{DBLP:journals/bmcbi/NascimentoPC16,
  author    = {Andr{\'{e}} C. A. Nascimento and
               Ricardo B. C. Prud{\^{e}}ncio and
               Ivan G. Costa},
  title     = {A multiple kernel learning algorithm for drug-target interaction prediction},
  journal   = {{BMC} Bioinformatics},
  volume    = {17},
  pages     = {46},
  year      = {2016},
  url       = {https://doi.org/10.1186/s12859-016-0890-3},
  doi       = {10.1186/s12859-016-0890-3},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bmcbi/NascimentoPC16},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/ijcnn/MacielCL16,
  author    = {Aron I. Maciel and
               Ivan G. Costa and
               Ana Carolina Lorena},
  title     = {Measuring the complexity of regression problems},
  booktitle = {2016 International Joint Conference on Neural Networks, {IJCNN} 2016,
               Vancouver, BC, Canada, July 24-29, 2016},
  pages     = {1450--1457},
  year      = {2016},
  crossref  = {DBLP:conf/ijcnn/2016},
  url       = {https://doi.org/10.1109/IJCNN.2016.7727369},
  doi       = {10.1109/IJCNN.2016.7727369},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/ijcnn/MacielCL16},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bioinformatics/AllhoffSCLZC15,
  author    = {Manuel Allhoff and
               Kristin Ser{\'{e}} and
               Heike Chauvistr{\'{e}} and
               Qiong Lin and
               Martin Zenke and
               Ivan G. Costa},
  title     = {Detecting differential peaks in ChIP-seq signals with {ODIN}},
  journal   = {Bioinformatics},
  volume    = {31},
  number    = {6},
  pages     = {980},
  year      = {2015},
  url       = {https://doi.org/10.1093/bioinformatics/btv030},
  doi       = {10.1093/bioinformatics/btv030},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bioinformatics/AllhoffSCLZC15},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bmcbi/SoutoJC15,
  author    = {Marc{\'{\i}}lio Carlos Pereira de Souto and
               Pablo A. Jaskowiak and
               Ivan G. Costa},
  title     = {Impact of missing data imputation methods on gene expression clustering
               and classification},
  journal   = {{BMC} Bioinformatics},
  volume    = {16},
  pages     = {64:1--64:9},
  year      = {2015},
  url       = {https://doi.org/10.1186/s12859-015-0494-3},
  doi       = {10.1186/s12859-015-0494-3},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bmcbi/SoutoJC15},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bioinformatics/GusmaoDZC14,
  author    = {Eduardo G. Gusm{\~{a}}o and
               Christoph Dieterich and
               Martin Zenke and
               Ivan G. Costa},
  title     = {Detection of active transcription factor binding sites with the combination
               of DNase hypersensitivity and histone modifications},
  journal   = {Bioinformatics},
  volume    = {30},
  number    = {22},
  pages     = {3143--3151},
  year      = {2014},
  url       = {https://doi.org/10.1093/bioinformatics/btu519},
  doi       = {10.1093/bioinformatics/btu519},
  timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bioinformatics/GusmaoDZC14},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bioinformatics/AllhoffSCLZC14,
  author    = {Manuel Allhoff and
               Kristin Ser{\'{e}} and
               Heike Chauvistr{\'{e}} and
               Qiong Lin and
               Martin Zenke and
               Ivan G. Costa},
  title     = {Detecting differential peaks in ChIP-seq signals with {ODIN}},
  journal   = {Bioinformatics},
  volume    = {30},
  number    = {24},
  pages     = {3467--3475},
  year      = {2014},
  url       = {https://doi.org/10.1093/bioinformatics/btu722},
  doi       = {10.1093/bioinformatics/btu722},
  timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bioinformatics/AllhoffSCLZC14},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bmcbi/JaskowiakCC14,
  author    = {Pablo A. Jaskowiak and
               Ricardo J. G. B. Campello and
               Ivan G. Costa},
  title     = {On the selection of appropriate distances for gene expression data
               clustering},
  journal   = {{BMC} Bioinformatics},
  volume    = {15},
  number    = {{S-2}},
  pages     = {S2},
  year      = {2014},
  url       = {https://doi.org/10.1186/1471-2105-15-S2-S2},
  doi       = {10.1186/1471-2105-15-S2-S2},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bmcbi/JaskowiakCC14},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bmcbi/AllhoffSMCRM13,
  author    = {Manuel Allhoff and
               Alexander Sch{\"{o}}nhuth and
               Marcel Martin and
               Ivan G. Costa and
               Sven Rahmann and
               Tobias Marschall},
  title     = {Discovering motifs that induce sequencing errors},
  journal   = {{BMC} Bioinformatics},
  volume    = {14},
  number    = {{S-5}},
  pages     = {S1},
  year      = {2013},
  url       = {https://doi.org/10.1186/1471-2105-14-S5-S1},
  doi       = {10.1186/1471-2105-14-S5-S1},
  timestamp = {Wed, 14 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bmcbi/AllhoffSMCRM13},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/tcbb/JaskowiakCC13,
  author    = {Pablo A. Jaskowiak and
               Ricardo J. G. B. Campello and
               Ivan G. Costa},
  title     = {Proximity Measures for Clustering Gene Expression Microarray Data:
               {A} Validation Methodology and a Comparative Analysis},
  journal   = {{IEEE/ACM} Trans. Comput. Biology Bioinform.},
  volume    = {10},
  number    = {4},
  pages     = {845--857},
  year      = {2013},
  url       = {https://doi.org/10.1109/TCBB.2013.9},
  doi       = {10.1109/TCBB.2013.9},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/tcbb/JaskowiakCC13},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/wob/AraujoSOC13,
  author    = {Gilderlanio S. Ara{\'{u}}jo and
               Manuela R. B. Souza and
               Jo{\~{a}}o Ricardo M. Oliveira and
               Ivan G. Costa},
  title     = {Random Forest and Gene Networks for Association of SNPs to Alzheimer's
               Disease},
  booktitle = {Advances in Bioinformatics and Computational Biology - 8th Brazilian
               Symposium on Bioinformatics, {BSB} 2013, Recife, Brazil, November
               3-7, 2013, Proceedings},
  pages     = {104--115},
  year      = {2013},
  crossref  = {DBLP:conf/wob/2013},
  url       = {https://doi.org/10.1007/978-3-319-02624-4_10},
  doi       = {10.1007/978-3-319-02624-4_10},
  timestamp = {Fri, 19 May 2017 01:25:53 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/wob/AraujoSOC13},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bioinformatics/RegoRCC12,
  author    = {Thais G. do Rego and
               Helge G. Roider and
               Francisco de A. T. de Carvalho and
               Ivan G. Costa},
  title     = {Inferring epigenetic and transcriptional regulation during blood cell
               development with a mixture of sparse linear models},
  journal   = {Bioinformatics},
  volume    = {28},
  number    = {18},
  pages     = {2297--2303},
  year      = {2012},
  url       = {https://doi.org/10.1093/bioinformatics/bts362},
  doi       = {10.1093/bioinformatics/bts362},
  timestamp = {Sun, 28 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bioinformatics/RegoRCC12},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bioinformatics/MarschallCCBKSS12,
  author    = {Tobias Marschall and
               Ivan G. Costa and
               Stefan Canzar and
               Markus Bauer and
               Gunnar W. Klau and
               Alexander Schliep and
               Alexander Sch{\"{o}}nhuth},
  title     = {{CLEVER:} clique-enumerating variant finder},
  journal   = {Bioinformatics},
  volume    = {28},
  number    = {22},
  pages     = {2875--2882},
  year      = {2012},
  url       = {https://doi.org/10.1093/bioinformatics/bts566},
  doi       = {10.1093/bioinformatics/bts566},
  timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bioinformatics/MarschallCCBKSS12},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/ijon/LorenaCSS12,
  author    = {Ana Carolina Lorena and
               Ivan G. Costa and
               Newton Spola{\^{o}}r and
               Marc{\'{\i}}lio Carlos Pereira de Souto},
  title     = {Analysis of complexity indices for classification problems: Cancer
               gene expression data},
  journal   = {Neurocomputing},
  volume    = {75},
  number    = {1},
  pages     = {33--42},
  year      = {2012},
  url       = {https://doi.org/10.1016/j.neucom.2011.03.054},
  doi       = {10.1016/j.neucom.2011.03.054},
  timestamp = {Tue, 06 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/ijon/LorenaCSS12},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/sbrn/SoutoCFSBC12,
  author    = {Marcilio C. P. de Souto and
               Andr{\'{e}} L. V. Coelho and
               Katti Faceli and
               Tiemi C. Sakata and
               Viviane Bonadia and
               Ivan G. Costa},
  title     = {A Comparison of External Clustering Evaluation Indices in the Context
               of Imbalanced Data Sets},
  booktitle = {2012 Brazilian Symposium on Neural Networks, Curitiba, Paran{\'{a}},
               Brazil, October 20-25, 2012},
  pages     = {49--54},
  year      = {2012},
  crossref  = {DBLP:conf/sbrn/2012},
  url       = {https://doi.org/10.1109/SBRN.2012.25},
  doi       = {10.1109/SBRN.2012.25},
  timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/sbrn/SoutoCFSBC12},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/sbrn/FilhoCOC12,
  author    = {Valmir Mac{\'{a}}rio Filho and
               Ivan G. Costa and
               Jo{\~{a}}o F. L. Oliveira and
               Francisco de A. T. de Carvalho},
  title     = {Predicting Gene Functions Using Semi-supervised Clustering Algorithms
               with Objective Function Optimization},
  booktitle = {2012 Brazilian Symposium on Neural Networks, Curitiba, Paran{\'{a}},
               Brazil, October 20-25, 2012},
  pages     = {61--66},
  year      = {2012},
  crossref  = {DBLP:conf/sbrn/2012},
  url       = {https://doi.org/10.1109/SBRN.2012.33},
  doi       = {10.1109/SBRN.2012.33},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/sbrn/FilhoCOC12},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/wob/GusmaoDC12,
  author    = {Eduardo G. Gusm{\~{a}}o and
               Christoph Dieterich and
               Ivan G. Costa},
  title     = {Prediction of Transcription Factor Binding Sites by Integrating DNase
               Digestion and Histone Modification},
  booktitle = {Advances in Bioinformatics and Computational Biology - 7th Brazilian
               Symposium on Bioinformatics, {BSB} 2012, Campo Grande, Brazil, August
               15-17, 2012. Proceedings},
  pages     = {109--119},
  year      = {2012},
  crossref  = {DBLP:conf/wob/2012},
  url       = {https://doi.org/10.1007/978-3-642-31927-3_10},
  doi       = {10.1007/978-3-642-31927-3_10},
  timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/wob/GusmaoDC12},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/wob/JaskowiakCC12,
  author    = {Pablo A. Jaskowiak and
               Ricardo J. G. B. Campello and
               Ivan G. Costa},
  title     = {Evaluating Correlation Coefficients for Clustering Gene Expression
               Profiles of Cancer},
  booktitle = {Advances in Bioinformatics and Computational Biology - 7th Brazilian
               Symposium on Bioinformatics, {BSB} 2012, Campo Grande, Brazil, August
               15-17, 2012. Proceedings},
  pages     = {120--131},
  year      = {2012},
  crossref  = {DBLP:conf/wob/2012},
  url       = {https://doi.org/10.1007/978-3-642-31927-3_11},
  doi       = {10.1007/978-3-642-31927-3_11},
  timestamp = {Sat, 16 Sep 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/wob/JaskowiakCC12},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/biodatamining/SchillingCS11,
  author    = {Ruben Schilling and
               Ivan G. Costa and
               Alexander Schliep},
  title     = {pGQL: {A} probabilistic graphical query language for gene expression
               time courses},
  journal   = {BioData Mining},
  volume    = {4},
  pages     = {9},
  year      = {2011},
  url       = {https://doi.org/10.1186/1756-0381-4-9},
  doi       = {10.1186/1756-0381-4-9},
  timestamp = {Wed, 14 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/biodatamining/SchillingCS11},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bioinformatics/HafemeisterCSS11,
  author    = {Christoph Hafemeister and
               Ivan G. Costa and
               Alexander Sch{\"{o}}nhuth and
               Alexander Schliep},
  title     = {Classifying short gene expression time-courses with Bayesian estimation
               of piecewise constant functions},
  journal   = {Bioinformatics},
  volume    = {27},
  number    = {7},
  pages     = {946--952},
  year      = {2011},
  url       = {https://doi.org/10.1093/bioinformatics/btr037},
  doi       = {10.1093/bioinformatics/btr037},
  timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bioinformatics/HafemeisterCSS11},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bioinformatics/RedestigC11,
  author    = {Henning Redestig and
               Ivan G. Costa},
  title     = {Detection and interpretation of metabolite-transcript coresponses
               using combined profiling data},
  journal   = {Bioinformatics {[ISMB/ECCB]}},
  volume    = {27},
  number    = {13},
  pages     = {357--365},
  year      = {2011},
  url       = {https://doi.org/10.1093/bioinformatics/btr231},
  doi       = {10.1093/bioinformatics/btr231},
  timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bioinformatics/RedestigC11},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bmcbi/CostaRRC11,
  author    = {Ivan G. Costa and
               Helge G. Roider and
               Thais G. do Rego and
               Francisco de A. T. de Carvalho},
  title     = {Predicting gene expression in {T} cell differentiation from histone
               modifications and transcription factor binding affinities by linear
               mixture models},
  journal   = {{BMC} Bioinformatics},
  volume    = {12},
  number    = {{S-1}},
  pages     = {S29},
  year      = {2011},
  url       = {https://doi.org/10.1186/1471-2105-12-S1-S29},
  doi       = {10.1186/1471-2105-12-S1-S29},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bmcbi/CostaRRC11},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bmcbi/GeorgiCS10,
  author    = {Benjamin Georgi and
               Ivan Gesteira Costa and
               Alexander Schliep},
  title     = {PyMix - The Python mixture package - a tool for clustering of heterogeneous
               biological data},
  journal   = {{BMC} Bioinformatics},
  volume    = {11},
  pages     = {9},
  year      = {2010},
  url       = {https://doi.org/10.1186/1471-2105-11-9},
  doi       = {10.1186/1471-2105-11-9},
  timestamp = {Wed, 14 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bmcbi/GeorgiCS10},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/ijcnn/SoutoLSC10,
  author    = {Marc{\'{\i}}lio Carlos Pereira de Souto and
               Ana Carolina Lorena and
               Newton Spola{\^{o}}r and
               Ivan Gesteira Costa},
  title     = {Complexity measures of supervised classifications tasks: {A} case
               study for cancer gene expression data},
  booktitle = {International Joint Conference on Neural Networks, {IJCNN} 2010, Barcelona,
               Spain, 18-23 July, 2010},
  pages     = {1--7},
  year      = {2010},
  crossref  = {DBLP:conf/ijcnn/2010},
  url       = {https://doi.org/10.1109/IJCNN.2010.5596305},
  doi       = {10.1109/IJCNN.2010.5596305},
  timestamp = {Sun, 04 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/ijcnn/SoutoLSC10},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/sbrn/LorenaSCS10,
  author    = {Ana Carolina Lorena and
               Newton Spola{\^{o}}r and
               Ivan G. Costa and
               Marcilio C. P. de Souto},
  title     = {On the Complexity of Gene Marker Selection},
  booktitle = {11th Brazilian Symposium on Neural Networks {(SBRN} 2010), Sao Paulo,
               23-28 October, 2010},
  pages     = {85--90},
  year      = {2010},
  crossref  = {DBLP:conf/sbrn/2010},
  url       = {https://doi.org/10.1109/SBRN.2010.23},
  doi       = {10.1109/SBRN.2010.23},
  timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/sbrn/LorenaSCS10},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/wob/RibeiroCC10,
  author    = {Clerton Ribeiro and
               Francisco de Assis Ten{\'{o}}rio de Carvalho and
               Ivan G. Costa},
  title     = {Semi-supervised Approach for Finding Cancer Sub-classes on Gene Expression
               Data},
  booktitle = {Advances in Bioinformatics and Computational Biology, 5th Brazilian
               Symposium on Bioinformatics, {BSB} 2010, Rio de Janeiro, Brazil, August
               31-September 3, 2010. Proceedings},
  pages     = {25--34},
  year      = {2010},
  crossref  = {DBLP:conf/wob/2010},
  url       = {https://doi.org/10.1007/978-3-642-15060-9_3},
  doi       = {10.1007/978-3-642-15060-9_3},
  timestamp = {Mon, 05 Jun 2017 12:40:40 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/wob/RibeiroCC10},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bioinformatics/CostaSHS09,
  author    = {Ivan G. Costa and
               Alexander Sch{\"{o}}nhuth and
               Christoph Hafemeister and
               Alexander Schliep},
  title     = {Constrained mixture estimation for analysis and robust classification
               of clinical time series},
  journal   = {Bioinformatics},
  volume    = {25},
  number    = {12},
  year      = {2009},
  url       = {https://doi.org/10.1093/bioinformatics/btp222},
  doi       = {10.1093/bioinformatics/btp222},
  timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bioinformatics/CostaSHS09},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/icann/NascimentoPSC09,
  author    = {Andr{\'{e}} C. A. Nascimento and
               Ricardo Bastos Cavalcante Prud{\^{e}}ncio and
               Marc{\'{\i}}lio Carlos Pereira de Souto and
               Ivan G. Costa},
  title     = {Mining Rules for the Automatic Selection Process of Clustering Methods
               Applied to Cancer Gene Expression Data},
  booktitle = {Artificial Neural Networks - {ICANN} 2009, 19th International Conference,
               Limassol, Cyprus, September 14-17, 2009, Proceedings, Part {II}},
  pages     = {20--29},
  year      = {2009},
  crossref  = {DBLP:conf/icann/2009-2},
  url       = {https://doi.org/10.1007/978-3-642-04277-5_3},
  doi       = {10.1007/978-3-642-04277-5_3},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/icann/NascimentoPSC09},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/wob/CostaLPS09,
  author    = {Ivan G. Costa and
               Ana Carolina Lorena and
               Liciana R. M. P. y Peres and
               Marc{\'{\i}}lio Carlos Pereira de Souto},
  title     = {Using Supervised Complexity Measures in the Analysis of Cancer Gene
               Expression Data Sets},
  booktitle = {Advances in Bioinformatics and Computational Biology, 4th Brazilian
               Symposium on Bioinformatics, {BSB} 2009, Porto Alegre, Brazil, July
               29-31, 2009. Proceedings},
  pages     = {48--59},
  year      = {2009},
  crossref  = {DBLP:conf/wob/2009},
  url       = {https://doi.org/10.1007/978-3-642-03223-3_5},
  doi       = {10.1007/978-3-642-03223-3_5},
  timestamp = {Mon, 05 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/wob/CostaLPS09},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bmcbi/SoutoCALS08,
  author    = {Marc{\'{\i}}lio Carlos Pereira de Souto and
               Ivan G. Costa and
               Daniel S. A. de Araujo and
               Teresa Bernarda Ludermir and
               Alexander Schliep},
  title     = {Clustering cancer gene expression data: a comparative study},
  journal   = {{BMC} Bioinformatics},
  volume    = {9},
  year      = {2008},
  url       = {https://doi.org/10.1186/1471-2105-9-497},
  doi       = {10.1186/1471-2105-9-497},
  timestamp = {Wed, 14 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bmcbi/SoutoCALS08},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/his/LorenaCS08,
  author    = {Ana Carolina Lorena and
               Ivan G. Costa and
               Marc{\'{\i}}lio Carlos Pereira de Souto},
  title     = {On the Complexity of Gene Expression Classification Data Sets},
  booktitle = {8th International Conference on Hybrid Intelligent Systems {(HIS}
               2008), September 10-12, 2008, Barcelona, Spain},
  pages     = {825--830},
  year      = {2008},
  crossref  = {DBLP:conf/his/2008},
  url       = {https://doi.org/10.1109/HIS.2008.163},
  doi       = {10.1109/HIS.2008.163},
  timestamp = {Fri, 02 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/his/LorenaCS08},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/ijcnn/SoutoACSLS08,
  author    = {Marc{\'{\i}}lio Carlos Pereira de Souto and
               Daniel S. A. de Araujo and
               Ivan G. Costa and
               Rodrigo G. F. Soares and
               Teresa Bernarda Ludermir and
               Alexander Schliep},
  title     = {Comparative study on normalization procedures for cluster analysis
               of gene expression datasets},
  booktitle = {Proceedings of the International Joint Conference on Neural Networks,
               {IJCNN} 2008, part of the {IEEE} World Congress on Computational Intelligence,
               {WCCI} 2008, Hong Kong, China, June 1-6, 2008},
  pages     = {2792--2798},
  year      = {2008},
  crossref  = {DBLP:conf/ijcnn/2008},
  url       = {https://doi.org/10.1109/IJCNN.2008.4634191},
  doi       = {10.1109/IJCNN.2008.4634191},
  timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/ijcnn/SoutoACSLS08},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/ijcnn/SoutoPSACLS08,
  author    = {Marc{\'{\i}}lio Carlos Pereira de Souto and
               Ricardo Bastos Cavalcante Prud{\^{e}}ncio and
               Rodrigo G. F. Soares and
               Daniel S. A. de Araujo and
               Ivan G. Costa and
               Teresa Bernarda Ludermir and
               Alexander Schliep},
  title     = {Ranking and selecting clustering algorithms using a meta-learning
               approach},
  booktitle = {Proceedings of the International Joint Conference on Neural Networks,
               {IJCNN} 2008, part of the {IEEE} World Congress on Computational Intelligence,
               {WCCI} 2008, Hong Kong, China, June 1-6, 2008},
  pages     = {3729--3735},
  year      = {2008},
  crossref  = {DBLP:conf/ijcnn/2008},
  url       = {https://doi.org/10.1109/IJCNN.2008.4634333},
  doi       = {10.1109/IJCNN.2008.4634333},
  timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/ijcnn/SoutoPSACLS08},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/ismb/CostaRHS08,
  author    = {Ivan G. Costa and
               Stefan Roepcke and
               Christoph Hafemeister and
               Alexander Schliep},
  title     = {Inferring differentiation pathways from gene expression},
  booktitle = {Proceedings 16th International Conference on Intelligent Systems for
               Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  pages     = {156--164},
  year      = {2008},
  crossref  = {DBLP:conf/ismb/2008},
  url       = {https://doi.org/10.1093/bioinformatics/btn153},
  doi       = {10.1093/bioinformatics/btn153},
  timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/ismb/CostaRHS08},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bmcbi/CostaKOS07,
  author    = {Ivan G. Costa and
               Roland Krause and
               Lennart Opitz and
               Alexander Schliep},
  title     = {Semi-supervised learning for the identification of syn-expressed genes
               from fused microarray and \emph{in situ }image data},
  journal   = {{BMC} Bioinformatics},
  volume    = {8},
  number    = {{S-10}},
  year      = {2007},
  url       = {https://doi.org/10.1186/1471-2105-8-S10-S3},
  doi       = {10.1186/1471-2105-8-S10-S3},
  timestamp = {Wed, 14 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bmcbi/CostaKOS07},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/wob/CostaSS07,
  author    = {Ivan G. Costa and
               Marc{\'{\i}}lio Carlos Pereira de Souto and
               Alexander Schliep},
  title     = {Validating Gene Clusterings by Selecting Informative Gene Ontology
               Terms with Mutual Information},
  booktitle = {Advances in Bioinformatics and Computational Biology, Second Brazilian
               Symposium on Bioinformatics, {BSB} 2007, Angra dos Reis, Brazil, August
               29-31, 2007, Proceedings},
  pages     = {81--92},
  year      = {2007},
  crossref  = {DBLP:conf/wob/2007},
  url       = {https://doi.org/10.1007/978-3-540-73731-5_8},
  doi       = {10.1007/978-3-540-73731-5_8},
  timestamp = {Fri, 02 Jun 2017 13:01:07 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/wob/CostaSS07},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/bioinformatics/CostaSS05,
  author    = {Ivan G. Costa and
               Alexander Sch{\"{o}}nhuth and
               Alexander Schliep},
  title     = {The Graphical Query Language: a tool for analysis of gene expression
               time-courses},
  journal   = {Bioinformatics},
  volume    = {21},
  number    = {10},
  pages     = {2544--2545},
  year      = {2005},
  url       = {https://doi.org/10.1093/bioinformatics/bti311},
  doi       = {10.1093/bioinformatics/bti311},
  timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/bioinformatics/CostaSS05},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/tcbb/SchliepCSS05,
  author    = {Alexander Schliep and
               Ivan G. Costa and
               Christine Steinhoff and
               Alexander Sch{\"{o}}nhuth},
  title     = {Analyzing Gene Expression Time-Courses},
  journal   = {{IEEE/ACM} Trans. Comput. Biology Bioinform.},
  volume    = {2},
  number    = {3},
  pages     = {179--193},
  year      = {2005},
  url       = {http://doi.acm.org/10.1145/1086748.1086750},
  doi       = {10.1145/1086748.1086750},
  timestamp = {Wed, 05 Apr 2006 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/tcbb/SchliepCSS05},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/gfkl/CostaS05,
  author    = {Ivan G. Costa and
               Alexander Schliep},
  title     = {On External Indices for Mixtures: Validating Mixtures of Genes},
  booktitle = {From Data and Information Analysis to Knowledge Engineering, Proceedings
               of the 29th Annual Conference of the Gesellschaft f{\"{u}}r Klassifikation
               e.V., University of Magdeburg, March 9-11, 2005},
  pages     = {662--669},
  year      = {2005},
  crossref  = {DBLP:conf/gfkl/2005},
  url       = {https://doi.org/10.1007/3-540-31314-1_81},
  doi       = {10.1007/3-540-31314-1_81},
  timestamp = {Thu, 15 Jun 2017 21:46:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/gfkl/CostaS05},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@article{DBLP:journals/jifs/CostaCS02,
  author    = {Ivan G. Costa and
               Francisco de A. T. de Carvalho and
               Marc{\'{\i}}lio Carlos Pereira de Souto},
  title     = {Comparative study on proximity indices for cluster analysis of gene
               expression time series},
  journal   = {Journal of Intelligent and Fuzzy Systems},
  volume    = {13},
  number    = {2-4},
  pages     = {133--142},
  year      = {2002},
  url       = {http://content.iospress.com/articles/journal-of-intelligent-and-fuzzy-systems/ifs00195},
  timestamp = {Mon, 18 May 2015 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/journals/jifs/CostaCS02},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/sbrn/CostaCS02,
  author    = {Ivan G. Costa and
               Francisco de A. T. de Carvalho and
               Marc{\'{\i}}lio Carlos Pereira de Souto},
  title     = {A Symbolic Approach to Gene Expression Time Series Analysis},
  booktitle = {7th Brazilian Symposium on Neural Networks {(SBRN} 2002), 11-14 November
               2002, Recife, Brazil},
  pages     = {25--30},
  year      = {2002},
  crossref  = {DBLP:conf/sbrn/2002},
  url       = {https://doi.org/10.1109/SBRN.2002.1181430},
  doi       = {10.1109/SBRN.2002.1181430},
  timestamp = {Fri, 26 May 2017 01:00:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/sbrn/CostaCS02},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@inproceedings{DBLP:conf/wob/CostaCS02,
  author    = {Ivan G. Costa and
               Francisco de A. T. de Carvalho and
               Marc{\'{\i}}lio Carlos Pereira de Souto},
  title     = {Stability Evaluation of Clustering Algorithms for Time Series Gene
               Expression Data},
  booktitle = {I Brazilian Workshop on Bioinformatics, October 18th, 2002, Gramado,
               RS, Brazil},
  pages     = {88--90},
  year      = {2002},
  crossref  = {DBLP:conf/wob/2002},
  timestamp = {Thu, 10 Mar 2005 15:02:43 +0100},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/wob/CostaCS02},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/ijcnn/2016,
  title     = {2016 International Joint Conference on Neural Networks, {IJCNN} 2016,
               Vancouver, BC, Canada, July 24-29, 2016},
  publisher = {{IEEE}},
  year      = {2016},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=7593175},
  isbn      = {978-1-5090-0620-5},
  timestamp = {Fri, 11 Nov 2016 14:42:01 +0100},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/ijcnn/2016},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/wob/2013,
  editor    = {Jo{\~{a}}o C. Setubal and
               Nalvo F. Almeida},
  title     = {Advances in Bioinformatics and Computational Biology - 8th Brazilian
               Symposium on Bioinformatics, {BSB} 2013, Recife, Brazil, November
               3-7, 2013, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {8213},
  publisher = {Springer},
  year      = {2013},
  url       = {https://doi.org/10.1007/978-3-319-02624-4},
  doi       = {10.1007/978-3-319-02624-4},
  isbn      = {978-3-319-02623-7},
  timestamp = {Fri, 19 May 2017 01:25:53 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/wob/2013},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/sbrn/2012,
  editor    = {Ana Carolina Lorena and
               Carlos Eduardo Thomaz and
               Aurora Trinidad Ramirez Pozo},
  title     = {2012 Brazilian Symposium on Neural Networks, Curitiba, Paran{\'{a}},
               Brazil, October 20-25, 2012},
  publisher = {{IEEE} Computer Society},
  year      = {2012},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=6374355},
  isbn      = {978-1-4673-2641-4},
  timestamp = {Tue, 31 May 2016 16:11:13 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/sbrn/2012},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/wob/2012,
  editor    = {Marc{\'{\i}}lio Carlos Pereira de Souto and
               Maricel G. Kann},
  title     = {Advances in Bioinformatics and Computational Biology - 7th Brazilian
               Symposium on Bioinformatics, {BSB} 2012, Campo Grande, Brazil, August
               15-17, 2012. Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {7409},
  publisher = {Springer},
  year      = {2012},
  url       = {https://doi.org/10.1007/978-3-642-31927-3},
  doi       = {10.1007/978-3-642-31927-3},
  isbn      = {978-3-642-31926-6},
  timestamp = {Fri, 19 May 2017 01:25:53 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/wob/2012},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/ijcnn/2010,
  title     = {International Joint Conference on Neural Networks, {IJCNN} 2010, Barcelona,
               Spain, 18-23 July, 2010},
  publisher = {{IEEE}},
  year      = {2010},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=5581822},
  isbn      = {978-1-4244-6916-1},
  timestamp = {Wed, 29 Mar 2017 16:45:25 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/ijcnn/2010},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/sbrn/2010,
  editor    = {Teresa Bernarda Ludermir and
               Karla Figueiredo and
               Carlos E. Thomaz},
  title     = {11th Brazilian Symposium on Neural Networks {(SBRN} 2010), Sao Paulo,
               23-28 October, 2010},
  publisher = {{IEEE} Computer Society},
  year      = {2010},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=5714394},
  isbn      = {978-1-4244-8391-4},
  timestamp = {Tue, 31 May 2016 16:11:49 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/sbrn/2010},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/wob/2010,
  editor    = {Carlos Eduardo Ferreira and
               Satoru Miyano and
               Peter F. Stadler},
  title     = {Advances in Bioinformatics and Computational Biology, 5th Brazilian
               Symposium on Bioinformatics, {BSB} 2010, Rio de Janeiro, Brazil, August
               31-September 3, 2010. Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {6268},
  publisher = {Springer},
  year      = {2010},
  url       = {https://doi.org/10.1007/978-3-642-15060-9},
  doi       = {10.1007/978-3-642-15060-9},
  isbn      = {978-3-642-15059-3},
  timestamp = {Mon, 05 Jun 2017 12:40:40 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/wob/2010},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/icann/2009-2,
  editor    = {Cesare Alippi and
               Marios M. Polycarpou and
               Christos G. Panayiotou and
               Georgios Ellinas},
  title     = {Artificial Neural Networks - {ICANN} 2009, 19th International Conference,
               Limassol, Cyprus, September 14-17, 2009, Proceedings, Part {II}},
  series    = {Lecture Notes in Computer Science},
  volume    = {5769},
  publisher = {Springer},
  year      = {2009},
  url       = {https://doi.org/10.1007/978-3-642-04277-5},
  doi       = {10.1007/978-3-642-04277-5},
  isbn      = {978-3-642-04276-8},
  timestamp = {Fri, 26 May 2017 00:50:49 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/icann/2009-2},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/wob/2009,
  editor    = {Katia S. Guimar{\~{a}}es and
               Anna R. Panchenko and
               Teresa M. Przytycka},
  title     = {Advances in Bioinformatics and Computational Biology, 4th Brazilian
               Symposium on Bioinformatics, {BSB} 2009, Porto Alegre, Brazil, July
               29-31, 2009. Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {5676},
  publisher = {Springer},
  year      = {2009},
  url       = {https://doi.org/10.1007/978-3-642-03223-3},
  doi       = {10.1007/978-3-642-03223-3},
  isbn      = {978-3-642-03222-6},
  timestamp = {Fri, 19 May 2017 01:25:53 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/wob/2009},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/his/2008,
  editor    = {Fatos Xhafa and
               Francisco Herrera and
               Ajith Abraham and
               Mario K{\"{o}}ppen and
               Jos{\'{e}} Manuel Ben{\'{\i}}tez},
  title     = {8th International Conference on Hybrid Intelligent Systems {(HIS}
               2008), September 10-12, 2008, Barcelona, Spain},
  publisher = {{IEEE} Computer Society},
  year      = {2008},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=4626579},
  isbn      = {978-0-7695-3326-1},
  timestamp = {Fri, 17 Apr 2015 14:17:38 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/his/2008},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/ijcnn/2008,
  title     = {Proceedings of the International Joint Conference on Neural Networks,
               {IJCNN} 2008, part of the {IEEE} World Congress on Computational Intelligence,
               {WCCI} 2008, Hong Kong, China, June 1-6, 2008},
  publisher = {{IEEE}},
  year      = {2008},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=4625775},
  isbn      = {978-1-4244-1820-6},
  timestamp = {Wed, 17 Jun 2015 13:44:42 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/ijcnn/2008},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/ismb/2008,
  title     = {Proceedings 16th International Conference on Intelligent Systems for
               Molecular Biology (ISMB), Toronto, Canada, July 19-23, 2008},
  year      = {2008},
  timestamp = {Mon, 04 Aug 2008 11:13:31 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/ismb/2008},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/wob/2007,
  editor    = {Marie{-}France Sagot and
               Maria Emilia Telles Walter},
  title     = {Advances in Bioinformatics and Computational Biology, Second Brazilian
               Symposium on Bioinformatics, {BSB} 2007, Angra dos Reis, Brazil, August
               29-31, 2007, Proceedings},
  series    = {Lecture Notes in Computer Science},
  volume    = {4643},
  publisher = {Springer},
  year      = {2007},
  url       = {https://doi.org/10.1007/978-3-540-73731-5},
  doi       = {10.1007/978-3-540-73731-5},
  isbn      = {978-3-540-73730-8},
  timestamp = {Fri, 02 Jun 2017 13:01:07 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/wob/2007},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/gfkl/2005,
  editor    = {Myra Spiliopoulou and
               Rudolf Kruse and
               Christian Borgelt and
               Andreas N{\"{u}}rnberger and
               Wolfgang Gaul},
  title     = {From Data and Information Analysis to Knowledge Engineering, Proceedings
               of the 29th Annual Conference of the Gesellschaft f{\"{u}}r Klassifikation
               e.V., University of Magdeburg, March 9-11, 2005},
  series    = {Studies in Classification, Data Analysis, and Knowledge Organization},
  publisher = {Springer},
  year      = {2006},
  url       = {https://doi.org/10.1007/3-540-31314-1},
  doi       = {10.1007/3-540-31314-1},
  isbn      = {978-3-540-31313-7},
  timestamp = {Thu, 15 Jun 2017 21:46:00 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/gfkl/2005},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/sbrn/2002,
  editor    = {Teresa Bernarda Ludermir and
               Marc{\'{\i}}lio Carlos Pereira de Souto},
  title     = {7th Brazilian Symposium on Neural Networks {(SBRN} 2002), 11-14 November
               2002, Recife, Brazil},
  publisher = {{IEEE} Computer Society},
  year      = {2002},
  url       = {http://ieeexplore.ieee.org/xpl/mostRecentIssue.jsp?punumber=8414},
  isbn      = {0-7695-1709-9},
  timestamp = {Tue, 31 May 2016 16:13:38 +0200},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/sbrn/2002},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
@proceedings{DBLP:conf/wob/2002,
  editor    = {Ana L. C. Bazzan},
  title     = {I Brazilian Workshop on Bioinformatics, October 18th, 2002, Gramado,
               RS, Brazil},
  year      = {2002},
  timestamp = {Thu, 10 Mar 2005 15:02:43 +0100},
  biburl    = {http://dblp.uni-trier.de/rec/bib/conf/wob/2002},
  bibsource = {dblp computer science bibliography, http://dblp.org}
}
maintained by Schloss Dagstuhl LZI at University of Trier