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ORCIDBibTeX records: Kevin R. Coombes
@article{DBLP:journals/bioinformatics/ZhaoYWLCACL22,
author = {Yue Zhao and
Lianbo Yu and
Xue Wu and
Haoran Li and
Kevin R. Coombes and
Kin Fai Au and
Lijun Cheng and
Lang Li},
title = {{CEDA:} integrating gene expression data with CRISPR-pooled screen
data identifies essential genes with higher expression},
journal = {Bioinform.},
volume = {38},
number = {23},
pages = {5245--5252},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btac668},
doi = {10.1093/BIOINFORMATICS/BTAC668},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoYWLCACL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AbramsCLC21,
author = {Zachary B. Abrams and
Caitlin E. Coombes and
Suli Li and
Kevin R. Coombes},
title = {Mercator: a pipeline for multi-method, unsupervised visualization
and distance generation},
journal = {Bioinform.},
volume = {37},
number = {17},
pages = {2780--2781},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab037},
doi = {10.1093/BIOINFORMATICS/BTAB037},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AbramsCLC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AbramsTAC21,
author = {Zachary B. Abrams and
Dwayne G. Tally and
Lynne V. Abruzzo and
Kevin R. Coombes},
title = {RCytoGPS: an {R} package for reading and visualizing cytogenetics
data},
journal = {Bioinform.},
volume = {37},
number = {23},
pages = {4589--4590},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab683},
doi = {10.1093/BIOINFORMATICS/BTAB683},
timestamp = {Sat, 25 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/AbramsTAC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AbramsTZCPAC21,
author = {Zachary B. Abrams and
Dwayne G. Tally and
Lin Zhang and
Caitlin E. Coombes and
Philip R. O. Payne and
Lynne V. Abruzzo and
Kevin R. Coombes},
title = {Pattern recognition in lymphoid malignancies using CytoGPS and Mercator},
journal = {{BMC} Bioinform.},
volume = {22},
number = {1},
pages = {100},
year = {2021},
url = {https://doi.org/10.1186/s12859-021-03992-1},
doi = {10.1186/S12859-021-03992-1},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AbramsTZCPAC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/CoombesLACB21,
author = {Caitlin E. Coombes and
Xin Liu and
Zachary B. Abrams and
Kevin R. Coombes and
Guy N. Brock},
title = {Simulation-derived best practices for clustering clinical data},
journal = {J. Biomed. Informatics},
volume = {118},
pages = {103788},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2021.103788},
doi = {10.1016/J.JBI.2021.103788},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/CoombesLACB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/CoombesCF21,
author = {Caitlin E. Coombes and
Kevin R. Coombes and
Naleef Fareed},
title = {A novel model to label delirium in an intensive care unit from clinician
actions},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {21},
number = {1},
pages = {97},
year = {2021},
url = {https://doi.org/10.1186/s12911-021-01461-6},
doi = {10.1186/S12911-021-01461-6},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/CoombesCF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcbdd/ZuckerC20,
author = {Mark R. Zucker and
Kevin R. Coombes},
title = {Generating simulated {SNP} array and sequencing data to assess genomic
segmentation algorithms},
journal = {Int. J. Comput. Biol. Drug Des.},
volume = {13},
number = {5/6},
pages = {438--453},
year = {2020},
url = {https://doi.org/10.1504/IJCBDD.2020.113822},
doi = {10.1504/IJCBDD.2020.113822},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijcbdd/ZuckerC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/CoombesALAC20,
author = {Caitlin E. Coombes and
Zachary B. Abrams and
Suli Li and
Lynne V. Abruzzo and
Kevin R. Coombes},
title = {Unsupervised machine learning and prognostic factors of survival in
chronic lymphocytic leukemia},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {7},
pages = {1019--1027},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa060},
doi = {10.1093/JAMIA/OCAA060},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/CoombesALAC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/TANSC20,
author = {Amir Asiaee T. and
Zachary B. Abrams and
Samantha Nakayiza and
Deepa Sampath and
Kevin R. Coombes},
title = {Explaining Gene Expression Using Twenty-One MicroRNAs},
journal = {J. Comput. Biol.},
volume = {27},
number = {7},
pages = {1157--1170},
year = {2020},
url = {https://doi.org/10.1089/cmb.2019.0321},
doi = {10.1089/CMB.2019.0321},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/TANSC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/AbramsZRACP20,
author = {Zachary B. Abrams and
Lin Zhang and
Ricky Rodriguez and
Lynne V. Abruzzo and
Kevin R. Coombes and
Philip R. P. Payne},
title = {CytoGPS: {A} Web-Enabled Karyotype Analysis Tool for Cytogeneticists
and Biomedical Data Scientists},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t006-1.4604857/t006-1.4604858/3416789-1.4604901},
timestamp = {Wed, 17 Apr 2024 11:47:01 +0200},
biburl = {https://dblp.org/rec/conf/amia/AbramsZRACP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/CoombesANBC20,
author = {Caitlin E. Coombes and
Zachary B. Abrams and
Samantha Nakayiza and
Guy N. Brock and
Kevin R. Coombes},
title = {Umpire 2.0: Simulating realistic, mixed-type, clinical data for machine
learning},
journal = {F1000Research},
volume = {9},
pages = {1186},
year = {2020},
url = {https://doi.org/10.12688/f1000research.25877.1},
doi = {10.12688/F1000RESEARCH.25877.1},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/CoombesANBC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZuckerAHBKAHC19,
author = {Mark R. Zucker and
Lynne V. Abruzzo and
Carmen D. Herling and
Lynn L. Barron and
Michael J. Keating and
Zachary B. Abrams and
Nyla A. Heerema and
Kevin R. Coombes},
title = {Inferring clonal heterogeneity in cancer using {SNP} arrays and whole
genome sequencing},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {2924--2931},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz057},
doi = {10.1093/BIOINFORMATICS/BTZ057},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZuckerAHBKAHC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZuckerAHBKAHC19a,
author = {Mark R. Zucker and
Lynne V. Abruzzo and
Carmen D. Herling and
Lynn L. Barron and
Michael J. Keating and
Zachary B. Abrams and
Nyla A. Heerema and
Kevin R. Coombes},
title = {Inferring clonal heterogeneity in cancer using {SNP} arrays and whole
genome sequencing},
journal = {Bioinform.},
volume = {35},
number = {17},
pages = {3216},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz243},
doi = {10.1093/BIOINFORMATICS/BTZ243},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZuckerAHBKAHC19a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AbramsZAHLDRCP19,
author = {Zachary B. Abrams and
Lin Zhang and
Lynne V. Abruzzo and
Nyla A. Heerema and
Suli Li and
Tom Dillon and
Ricky Rodriguez and
Kevin R. Coombes and
Philip R. O. Payne},
title = {CytoGPS: a web-enabled karyotype analysis tool for cytogenetics},
journal = {Bioinform.},
volume = {35},
number = {24},
pages = {5365--5366},
year = {2019},
url = {https://doi.org/10.1093/bioinformatics/btz520},
doi = {10.1093/BIOINFORMATICS/BTZ520},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AbramsZAHLDRCP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AbramsJHPC19,
author = {Zachary B. Abrams and
Travis S. Johnson and
Kun Huang and
Philip R. O. Payne and
Kevin R. Coombes},
title = {A protocol to evaluate {RNA} sequencing normalization methods},
journal = {{BMC} Bioinform.},
volume = {20-S},
number = {24},
pages = {679},
year = {2019},
url = {https://doi.org/10.1186/s12859-019-3247-x},
doi = {10.1186/S12859-019-3247-X},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AbramsJHPC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangAKC18,
author = {Min Wang and
Zachary B. Abrams and
Steven M. Kornblau and
Kevin R. Coombes},
title = {Thresher: determining the number of clusters while removing outliers},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {9:1--9:15},
year = {2018},
url = {https://doi.org/10.1186/s12859-017-1998-9},
doi = {10.1186/S12859-017-1998-9},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WangAKC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SiddiquiBLCZBMC18,
author = {Jalal K. Siddiqui and
Elizabeth Baskin and
Mingrui Liu and
Carmen Z. Cantemir{-}Stone and
Bofei Zhang and
Russell Bonneville and
Joseph P. McElroy and
Kevin R. Coombes and
Ewy A Math{\'{e}}},
title = {IntLIM: integration using linear models of metabolomics and gene expression
data},
journal = {{BMC} Bioinform.},
volume = {19},
number = {1},
pages = {81:1--81:12},
year = {2018},
url = {https://doi.org/10.1186/s12859-018-2085-6},
doi = {10.1186/S12859-018-2085-6},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/SiddiquiBLCZBMC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1806-04047,
author = {Amir Asiaee T. and
Samet Oymak and
Kevin R. Coombes and
Arindam Banerjee},
title = {High Dimensional Data Enrichment: Interpretable, Fast, and Data-Efficient},
journal = {CoRR},
volume = {abs/1806.04047},
year = {2018},
url = {http://arxiv.org/abs/1806.04047},
eprinttype = {arXiv},
eprint = {1806.04047},
timestamp = {Fri, 29 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1806-04047.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/RajeACP16,
author = {Satyajeet Raje and
Zachary B. Abrams and
Kevin R. Coombes and
Philip R. O. Payne},
title = {Using Karyotype Data for Automated Disease Classification: {A} Proof
of Concept Demonstration},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
CA, USA, March 21-24, 2016},
publisher = {{AMIA}},
year = {2016},
url = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t004-1.3012641/f004-1.3012642/a105-1.3012714/a107-1.3012709},
timestamp = {Wed, 20 Jun 2018 17:09:02 +0200},
biburl = {https://dblp.org/rec/conf/cri/RajeACP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JuLRSZLDAWMC15,
author = {Zhenlin Ju and
Wenbin Liu and
Paul L. Roebuck and
Doris R. Siwak and
Nianxiang Zhang and
Yiling Lu and
Michael A. Davies and
Rehan Akbani and
John N. Weinstein and
Gordon B. Mills and
Kevin R. Coombes},
title = {Development of a robust classifier for quality control of reverse-phase
protein arrays},
journal = {Bioinform.},
volume = {31},
number = {6},
pages = {912--918},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu736},
doi = {10.1093/BIOINFORMATICS/BTU736},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/JuLRSZLDAWMC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TongCJBDLLH015,
author = {Pan Tong and
Kevin R. Coombes and
Faye M. Johnson and
Lauren A. Byers and
Lixia Diao and
Diane D. Liu and
J. Jack Lee and
John V. Heymach and
Jing Wang},
title = {drexplorer: {A} tool to explore dose-response relationships and drug-drug
interactions},
journal = {Bioinform.},
volume = {31},
number = {10},
pages = {1692--1694},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv028},
doi = {10.1093/BIOINFORMATICS/BTV028},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TongCJBDLLH015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/GregoryMCB14,
author = {Karl B. Gregory and
Amin A. Momin and
Kevin R. Coombes and
Veerabhadran Baladandayuthapani},
title = {Latent Feature Decompositions for Integrative Analysis of Multi-Platform
Genomic Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {11},
number = {6},
pages = {984--994},
year = {2014},
url = {https://doi.org/10.1109/TCBB.2014.2325035},
doi = {10.1109/TCBB.2014.2325035},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/GregoryMCB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TongCSC13,
author = {Pan Tong and
Yong Chen and
Xiao Su and
Kevin R. Coombes},
title = {{SIBER:} systematic identification of bimodally expressed genes using
RNAseq data},
journal = {Bioinform.},
volume = {29},
number = {5},
pages = {605--613},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/bts713},
doi = {10.1093/BIOINFORMATICS/BTS713},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TongCSC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ManyamICC13,
author = {Ganiraju Manyam and
Cristina Ivan and
George A. Calin and
Kevin R. Coombes},
title = {targetHub: a programmable interface for miRNA-gene interactions},
journal = {Bioinform.},
volume = {29},
number = {20},
pages = {2657--2658},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt439},
doi = {10.1093/BIOINFORMATICS/BTT439},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ManyamICC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TongC12,
author = {Pan Tong and
Kevin R. Coombes},
title = {integIRTy: a method to identify genes altered in cancer by accounting
for multiple mechanisms of regulation using item response theory},
journal = {Bioinform.},
volume = {28},
number = {22},
pages = {2861--2869},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts561},
doi = {10.1093/BIOINFORMATICS/BTS561},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/TongC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangC12,
author = {Jiexin Zhang and
Kevin R. Coombes},
title = {Sources of variation in false discovery rate estimation include sample
size, correlation, and inherent differences between groups},
journal = {{BMC} Bioinform.},
volume = {13},
number = {{S-13}},
pages = {S1},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-S13-S1},
doi = {10.1186/1471-2105-13-S13-S1},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/gensips/GregoryCMGBLPHMB12,
author = {Karl B. Gregory and
Kevin R. Coombes and
Amin A. Momin and
Luc Girard and
Lauren A. Byers and
Steven Lin and
Michael Peyton and
John V. Heymach and
John D. Minna and
Veerabhadran Baladandayuthapani},
title = {Latent feature decompositions for integrative analysis of diverse
high-throughput genomic data},
booktitle = {Proceedings 2012 {IEEE} International Workshop on Genomic Signal Processing
and Statistics, GENSiPS 2012, Washington, DC, USA, December 2-4, 2012},
pages = {130--134},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/GENSIPS.2012.6507746},
doi = {10.1109/GENSIPS.2012.6507746},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/gensips/GregoryCMGBLPHMB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangWMLMC09,
author = {Li Zhang and
Qingyi Wei and
Li Mao and
Wenbin Liu and
Gordon B. Mills and
Kevin R. Coombes},
title = {Serial dilution curve: a new method for analysis of reverse phase
protein array data},
journal = {Bioinform.},
volume = {25},
number = {5},
pages = {650--654},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btn663},
doi = {10.1093/BIOINFORMATICS/BTN663},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangWMLMC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NeeleyKCB09,
author = {E. Shannon Neeley and
Steven M. Kornblau and
Kevin R. Coombes and
Keith A. Baggerly},
title = {Variable slope normalization of reverse phase protein arrays},
journal = {Bioinform.},
volume = {25},
number = {11},
pages = {1384--1389},
year = {2009},
url = {https://doi.org/10.1093/bioinformatics/btp174},
doi = {10.1093/BIOINFORMATICS/BTP174},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NeeleyKCB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/StanislausCDCHMA08,
author = {Romesh Stanislaus and
Mark Carey and
Helena F. Deus and
Kevin R. Coombes and
Bryan T. J. Hennessy and
Gordon B. Mills and
Jonas S. Almeida},
title = {{RPPAML/RIMS:} {A} metadata format and an information management system
for reverse phase protein arrays},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-555},
doi = {10.1186/1471-2105-9-555},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/StanislausCDCHMA08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/GoldMC08,
author = {David L. Gold and
Bani K. Mallick and
Kevin R. Coombes},
title = {Real-Time Gene Expression: Statistical Challenges in Design and Inference},
journal = {J. Comput. Biol.},
volume = {15},
number = {6},
pages = {611--623},
year = {2008},
url = {https://doi.org/10.1089/cmb.2007.0220},
doi = {10.1089/CMB.2007.0220},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/GoldMC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/GoldCWM07,
author = {David L. Gold and
Kevin R. Coombes and
Jing Wang and
Bani K. Mallick},
title = {Enrichment analysis in high-throughput genomics - accounting for dependency
in the {NULL}},
journal = {Briefings Bioinform.},
volume = {8},
number = {2},
pages = {71--77},
year = {2007},
url = {https://doi.org/10.1093/bib/bbl019},
doi = {10.1093/BIB/BBL019},
timestamp = {Thu, 04 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/GoldCWM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KarpievitchHSMCBA07,
author = {Yuliya V. Karpievitch and
Elizabeth G. Hill and
Adam J. Smolka and
Jeffrey S. Morris and
Kevin R. Coombes and
Keith A. Baggerly and
Jonas S. Almeida},
title = {PrepMS: {TOF} {MS} data graphical preprocessing tool},
journal = {Bioinform.},
volume = {23},
number = {2},
pages = {264--265},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btl583},
doi = {10.1093/BIOINFORMATICS/BTL583},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/KarpievitchHSMCBA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuHBCHM07,
author = {Jianhua Hu and
Xuming He and
Keith A. Baggerly and
Kevin R. Coombes and
Bryan T. J. Hennessy and
Gordon B. Mills},
title = {Non-parametric quantification of protein lysate arrays},
journal = {Bioinform.},
volume = {23},
number = {15},
pages = {1986--1994},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm283},
doi = {10.1093/BIOINFORMATICS/BTM283},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuHBCHM07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangZC06,
author = {Jiexin Zhang and
Li Zhang and
Kevin R. Coombes},
title = {Gene sequence signatures revealed by mining the UniGene affiliation
network},
journal = {Bioinform.},
volume = {22},
number = {4},
pages = {385--391},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/bti796},
doi = {10.1093/BIOINFORMATICS/BTI796},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangZC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MorrisCKBK05,
author = {Jeffrey S. Morris and
Kevin R. Coombes and
John M. Koomen and
Keith A. Baggerly and
Ryuji Kobayashi},
title = {Feature extraction and quantification for mass spectrometry in biomedical
applications using the mean spectrum},
journal = {Bioinform.},
volume = {21},
number = {9},
pages = {1764--1775},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti254},
doi = {10.1093/BIOINFORMATICS/BTI254},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/MorrisCKBK05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/JiWLWC05,
author = {Yuan Ji and
Chunlei Wu and
Ping Liu and
Jing Wang and
Kevin R. Coombes},
title = {Applications of beta-mixture models in bioinformatics},
journal = {Bioinform.},
volume = {21},
number = {9},
pages = {2118--2122},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti318},
doi = {10.1093/BIOINFORMATICS/BTI318},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/JiWLWC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HuKZHC05,
author = {Jianhua Hu and
Mini Kapoor and
Wei Zhang and
Stanley R. Hamilton and
Kevin R. Coombes},
title = {Analysis of dose-response effects on gene expression data with comparison
of two microarray platforms},
journal = {Bioinform.},
volume = {21},
number = {17},
pages = {3524--3529},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti592},
doi = {10.1093/BIOINFORMATICS/BTI592},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/HuKZHC05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BaggerlyMC04,
author = {Keith A. Baggerly and
Jeffrey S. Morris and
Kevin R. Coombes},
title = {Reproducibility of {SELDI-TOF} protein patterns in serum: comparing
datasets from different experiments},
journal = {Bioinform.},
volume = {20},
number = {5},
pages = {777--785},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/btg484},
doi = {10.1093/BIOINFORMATICS/BTG484},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BaggerlyMC04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WangCHKA04,
author = {Jing Wang and
Kevin R. Coombes and
W. Edward Highsmith and
Michael J. Keating and
Lynne V. Abruzzo},
title = {Differences in gene expression between B-cell chronic lymphocytic
leukemia and normal {B} cells: a meta-analysis of three microarray
studies},
journal = {Bioinform.},
volume = {20},
number = {17},
pages = {3166--3178},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth381},
doi = {10.1093/BIOINFORMATICS/BTH381},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WangCHKA04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/CoombesHKBSA02,
author = {Kevin R. Coombes and
W. Edward Highsmith and
Tammy A. Krogmann and
Keith A. Baggerly and
David N. Stivers and
Lynne V. Abruzzo},
title = {Identifying and Quantifying Sources of Variation in Microarray Data
Using High-Density cDNA Membrane Arrays},
journal = {J. Comput. Biol.},
volume = {9},
number = {4},
pages = {655--669},
year = {2002},
url = {https://doi.org/10.1089/106652702760277372},
doi = {10.1089/106652702760277372},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/CoombesHKBSA02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/BaggerlyCHSAZ01,
author = {Keith A. Baggerly and
Kevin R. Coombes and
Kenneth R. Hess and
David N. Stivers and
Lynne V. Abruzzo and
Wei Zhang},
title = {Identifying Differentially Expressed Genes in cDNA Microarray Experiments},
journal = {J. Comput. Biol.},
volume = {8},
number = {6},
pages = {639--659},
year = {2001},
url = {https://doi.org/10.1089/106652701753307539},
doi = {10.1089/106652701753307539},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jcb/BaggerlyCHSAZ01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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