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ORCIDBibTeX records: Jong Choi 0001
@inproceedings{DBLP:conf/eScience/BanerjeeLCGCCKRR23,
author = {Tania Banerjee and
Jaemoon Lee and
Jong Choi and
Qian Gong and
Jieyang Chen and
Choong{-}Seock Chang and
Scott Klasky and
Anand Rangarajan and
Sanjay Ranka},
title = {Online and Scalable Data Compression Pipeline with Guarantees on Quantities
of Interest},
booktitle = {19th {IEEE} International Conference on e-Science, e-Science 2023,
Limassol, Cyprus, October 9-13, 2023},
pages = {1--10},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/e-Science58273.2023.10254934},
doi = {10.1109/E-SCIENCE58273.2023.10254934},
timestamp = {Fri, 29 Sep 2023 13:35:31 +0200},
biburl = {https://dblp.org/rec/conf/eScience/BanerjeeLCGCCKRR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hipc/BanerjeeLCGCKRR23,
author = {Tania Banerjee and
Jaemoon Lee and
Jong Choi and
Qian Gong and
Jieyang Chen and
Scott Klasky and
Anand Rangarajan and
Sanjay Ranka},
title = {Fast Algorithms for Scientific Data Compression},
booktitle = {30th {IEEE} International Conference on High Performance Computing,
Data, and Analytics, HiPC 2023, Goa, India, December 18-21, 2023},
pages = {143--152},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/HiPC58850.2023.00030},
doi = {10.1109/HIPC58850.2023.00030},
timestamp = {Tue, 16 Apr 2024 13:57:14 +0200},
biburl = {https://dblp.org/rec/conf/hipc/BanerjeeLCGCKRR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iri/LeeCJTSC23,
author = {Sangkeun Lee and
Jong Choi and
Gs Jung and
Anika Tabassum and
Nils M. Stenvig and
Supriya Chinthavali},
title = {Predicting Power Outage During Extreme Weather Events with {EAGLE-I}
and {NWS} Datasets},
booktitle = {24th {IEEE} International Conference on Information Reuse and Integration
for Data Science, {IRI} 2023, Bellevue, WA, USA, August 4-6, 2023},
pages = {211--212},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/IRI58017.2023.00042},
doi = {10.1109/IRI58017.2023.00042},
timestamp = {Mon, 20 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iri/LeeCJTSC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mascots/KarimiPCWW23,
author = {Ahmad Maroof Karimi and
Arnab K. Paul and
Jong Youl Choi and
Lipeng Wan and
Feiyi Wang},
title = {Analyzing File Access Patterns on Large-Scale {HPC} Systems: Opportunities
for File Prefetching},
booktitle = {31st International Symposium on Modeling, Analysis, and Simulation
of Computer and Telecommunication Systems, {MASCOTS} 2023, Stony Brook,
NY, USA, October 16-18, 2023},
pages = {1--4},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/MASCOTS59514.2023.10387610},
doi = {10.1109/MASCOTS59514.2023.10387610},
timestamp = {Fri, 09 Feb 2024 20:38:51 +0100},
biburl = {https://dblp.org/rec/conf/mascots/KarimiPCWW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/ChoiPZMLBI23,
author = {Jong Youl Choi and
Massimiliano Lupo Pasini and
Pei Zhang and
Kshitij Mehta and
Frank Liu and
Jonghyun Bae and
Khaled Ibrahim},
title = {DDStore: Distributed Data Store for Scalable Training of Graph Neural
Networks on Large Atomistic Modeling Datasets},
booktitle = {Proceedings of the {SC} '23 Workshops of The International Conference
on High Performance Computing, Network, Storage, and Analysis, {SC-W}
2023, Denver, CO, USA, November 12-17, 2023},
pages = {941--950},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3624062.3624171},
doi = {10.1145/3624062.3624171},
timestamp = {Sun, 10 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/ChoiPZMLBI23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2311-01288,
author = {Junmin Gu and
Paul Lin and
Kesheng Wu and
Seung{-}Hoe Ku and
Choong{-}Seock Chang and
Randy Michael Churchill and
Jong Choi and
Norbert Podhorszki and
Scott Klasky},
title = {Unraveling Diffusion in Fusion Plasma: {A} Case Study of In Situ Processing
and Particle Sorting},
journal = {CoRR},
volume = {abs/2311.01288},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2311.01288},
doi = {10.48550/ARXIV.2311.01288},
eprinttype = {arXiv},
eprint = {2311.01288},
timestamp = {Tue, 07 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2311-01288.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2311-05407,
author = {Gang Seob Jung and
Sangkeun Lee and
Jong Youl Choi},
title = {Data Distillation for Neural Network Potentials toward Foundational
Dataset},
journal = {CoRR},
volume = {abs/2311.05407},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2311.05407},
doi = {10.48550/ARXIV.2311.05407},
eprinttype = {arXiv},
eprint = {2311.05407},
timestamp = {Thu, 16 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2311-05407.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/MehtaAWLSSCTHYS22,
author = {Kshitij Mehta and
Bryce Allen and
Matthew Wolf and
Jeremy Logan and
Eric Suchyta and
Swati Singhal and
Jong Youl Choi and
Keichi Takahashi and
Kevin A. Huck and
Igor Yakushin and
Alan Sussman and
Todd S. Munson and
Ian T. Foster and
Scott Klasky},
title = {A codesign framework for online data analysis and reduction},
journal = {Concurr. Comput. Pract. Exp.},
volume = {34},
number = {14},
year = {2022},
url = {https://doi.org/10.1002/cpe.6519},
doi = {10.1002/CPE.6519},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/concurrency/MehtaAWLSSCTHYS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/SuchytaKPWACCDD22,
author = {Eric Suchyta and
Scott Klasky and
Norbert Podhorszki and
Matthew Wolf and
Abolaji D. Adesoji and
Choong{-}Seock Chang and
Jong Choi and
Philip E. Davis and
Julien Dominski and
St{\'{e}}phane Ethier and
Ian T. Foster and
Kai Germaschewski and
Berk Geveci and
Chris Harris and
Kevin A. Huck and
Qing Liu and
Jeremy Logan and
Kshitij Mehta and
Gabriele Merlo and
Shirley V. Moore and
Todd S. Munson and
Manish Parashar and
David Pugmire and
Mark S. Shephard and
Cameron W. Smith and
Pradeep Subedi and
Lipeng Wan and
Ruonan Wang and
Shuangxi Zhang},
title = {The Exascale Framework for High Fidelity coupled Simulations {(EFFIS):}
Enabling whole device modeling in fusion science},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {36},
number = {1},
pages = {106--128},
year = {2022},
url = {https://doi.org/10.1177/10943420211019119},
doi = {10.1177/10943420211019119},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijhpca/SuchytaKPWACCDD22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/ChoiZMBP22,
author = {Jong Youl Choi and
Pei Zhang and
Kshitij Mehta and
Andrew E. Blanchard and
Massimiliano Lupo Pasini},
title = {Scalable training of graph convolutional neural networks for fast
and accurate predictions of {HOMO-LUMO} gap in molecules},
journal = {J. Cheminformatics},
volume = {14},
number = {1},
pages = {70},
year = {2022},
url = {https://doi.org/10.1186/s13321-022-00652-1},
doi = {10.1186/S13321-022-00652-1},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/ChoiZMBP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mlst/PasiniZRC22,
author = {Massimiliano Lupo Pasini and
Pei Zhang and
Samuel Temple Reeve and
Jong Youl Choi},
title = {Multi-task graph neural networks for simultaneous prediction of global
and atomic properties in ferromagnetic systems \({}^{\mbox{*}}\)},
journal = {Mach. Learn. Sci. Technol.},
volume = {3},
number = {2},
pages = {25007},
year = {2022},
url = {https://doi.org/10.1088/2632-2153/ac6a51},
doi = {10.1088/2632-2153/AC6A51},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mlst/PasiniZRC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/SuchytaCKPGHKSS22,
author = {Eric Suchyta and
Jong Youl Choi and
Seung{-}Hoe Ku and
David Pugmire and
Ana Gainaru and
Kevin A. Huck and
Ralph Kube and
Aaron Scheinberg and
Fr{\'{e}}d{\'{e}}ric Suter and
Choong{-}Seock Chang and
Todd S. Munson and
Norbert Podhorszki and
Scott Klasky},
title = {Hybrid Analysis of Fusion Data for Online Understanding of Complex
Science on Extreme Scale Computers},
booktitle = {{IEEE} International Conference on Cluster Computing, {CLUSTER} 2022,
Heidelberg, Germany, September 5-8, 2022},
pages = {218--229},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/CLUSTER51413.2022.00035},
doi = {10.1109/CLUSTER51413.2022.00035},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/SuchytaCKPGHKSS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hipc/BanerjeeCLGWKRR22,
author = {Tania Banerjee and
Jong Choi and
Jaemoon Lee and
Qian Gong and
Ruonan Wang and
Scott Klasky and
Anand Rangarajan and
Sanjay Ranka},
title = {An Algorithmic and Software Pipeline for Very Large Scale Scientific
Data Compression with Error Guarantees},
booktitle = {29th {IEEE} International Conference on High Performance Computing,
Data, and Analytics, HiPC 2022, Bengaluru, India, December 18-21,
2022},
pages = {226--235},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/HiPC56025.2022.00039},
doi = {10.1109/HIPC56025.2022.00039},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hipc/BanerjeeCLGWKRR22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/PaulCKW22,
author = {Arnab K. Paul and
Jong Youl Choi and
Ahmad Maroof Karimi and
Feiyi Wang},
editor = {Jon B. Weissman and
Abhishek Chandra and
Ada Gavrilovska and
Devesh Tiwari},
title = {Machine Learning Assisted {HPC} Workload Trace Generation for Leadership
Scale Storage Systems},
booktitle = {{HPDC} '22: The 31st International Symposium on High-Performance Parallel
and Distributed Computing, Minneapolis, MN, USA, 27 June 2022 - 1
July 2022},
pages = {199--212},
publisher = {{ACM}},
year = {2022},
url = {https://doi.org/10.1145/3502181.3531457},
doi = {10.1145/3502181.3531457},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hpdc/PaulCKW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2202-01954,
author = {Massimiliano Lupo Pasini and
Pei Zhang and
Samuel Temple Reeve and
Jong Youl Choi},
title = {Multi-task graph neural networks for simultaneous prediction of global
and atomic properties in ferromagnetic systems},
journal = {CoRR},
volume = {abs/2202.01954},
year = {2022},
url = {https://arxiv.org/abs/2202.01954},
eprinttype = {arXiv},
eprint = {2202.01954},
timestamp = {Thu, 10 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2202-01954.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-11333,
author = {Jong Youl Choi and
Pei Zhang and
Kshitij Mehta and
Andrew E. Blanchard and
Massimiliano Lupo Pasini},
title = {Scalable training of graph convolutional neural networks for fast
and accurate predictions of {HOMO-LUMO} gap in molecules},
journal = {CoRR},
volume = {abs/2207.11333},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2207.11333},
doi = {10.48550/ARXIV.2207.11333},
eprinttype = {arXiv},
eprint = {2207.11333},
timestamp = {Thu, 09 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2207-11333.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2212-10733,
author = {Tania Banerjee and
Jong Choi and
Jaemoon Lee and
Qian Gong and
Jieyang Chen and
Scott Klasky and
Anand Rangarajan and
Sanjay Ranka},
title = {Scalable Hybrid Learning Techniques for Scientific Data Compression},
journal = {CoRR},
volume = {abs/2212.10733},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2212.10733},
doi = {10.48550/ARXIV.2212.10733},
eprinttype = {arXiv},
eprint = {2212.10733},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2212-10733.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/AlexanderABBCCC21,
author = {Francis J. Alexander and
James A. Ang and
Jenna A. Bilbrey and
Jan Balewski and
Tiernan Casey and
Ryan Chard and
Jong Choi and
Sutanay Choudhury and
Bert J. Debusschere and
Anthony M. DeGennaro and
Nikoli Dryden and
J. Austin Ellis and
Ian T. Foster and
Cristina Garcia{-}Cardona and
Sayan Ghosh and
Peter Harrington and
Yunzhi Huang and
Shantenu Jha and
Travis Johnston and
Ai Kagawa and
Ramakrishnan Kannan and
Neeraj Kumar and
Zhengchun Liu and
Naoya Maruyama and
Satoshi Matsuoka and
Erin McCarthy and
Jamaludin Mohd{-}Yusof and
Peter Nugent and
Yosuke Oyama and
Thomas Proffen and
David Pugmire and
Sivasankaran Rajamanickam and
Vinay Ramakrishniah and
Malachi Schram and
Sudip K. Seal and
Ganesh Sivaraman and
Christine Sweeney and
Li Tan and
Rajeev Thakur and
Brian Van Essen and
Logan T. Ward and
Paul M. Welch and
Michael Wolf and
Sotiris S. Xantheas and
Kevin G. Yager and
Shinjae Yoo and
Byung{-}Jun Yoon},
title = {Co-design Center for Exascale Machine Learning Technologies (ExaLearn)},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {35},
number = {6},
pages = {598--616},
year = {2021},
url = {https://doi.org/10.1177/10943420211029302},
doi = {10.1177/10943420211029302},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijhpca/AlexanderABBCCC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/FosterABCCDDGGH21,
author = {Ian T. Foster and
Mark Ainsworth and
Julie Bessac and
Franck Cappello and
Jong Choi and
Sheng Di and
Zichao Wendy Di and
Ali Murat Gok and
Hanqi Guo and
Kevin A. Huck and
Christopher Kelly and
Scott Klasky and
Kerstin Kleese van Dam and
Xin Liang and
Kshitij Mehta and
Manish Parashar and
Tom Peterka and
Line Pouchard and
Tong Shu and
Ozan Tugluk and
Hubertus Van Dam and
Lipeng Wan and
Matthew Wolf and
Justin M. Wozniak and
Wei Xu and
Igor Yakushin and
Shinjae Yoo and
Todd S. Munson},
title = {Online data analysis and reduction: An important Co-design motif for
extreme-scale computers},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {35},
number = {6},
pages = {617--635},
year = {2021},
url = {https://doi.org/10.1177/10943420211023549},
doi = {10.1177/10943420211023549},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijhpca/FosterABCCDDGGH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icppw/SinghalSWMC21,
author = {Swati Singhal and
Alan Sussman and
Matthew Wolf and
Kshitij Mehta and
Jong Youl Choi},
editor = {Federico Silla and
Osni Marques},
title = {{DYFLOW:} {A} flexible framework for orchestrating scientific workflows
on supercomputers},
booktitle = {{ICPP} Workshops 2021: 50th International Conference on Parallel Processing,
Virtual Event / Lemont (near Chicago), IL, USA, August 9-12, 2021},
pages = {31:1--31:11},
publisher = {{ACM}},
year = {2021},
url = {https://doi.org/10.1145/3458744.3474037},
doi = {10.1145/3458744.3474037},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icppw/SinghalSWMC21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/ChenW0W0PTCWMFK21,
author = {Jieyang Chen and
Lipeng Wan and
Xin Liang and
Ben Whitney and
Qing Liu and
David Pugmire and
Nicholas Thompson and
Jong Youl Choi and
Matthew Wolf and
Todd S. Munson and
Ian T. Foster and
Scott Klasky},
title = {Accelerating Multigrid-based Hierarchical Scientific Data Refactoring
on GPUs},
booktitle = {35th {IEEE} International Parallel and Distributed Processing Symposium,
{IPDPS} 2021, Portland, OR, USA, May 17-21, 2021},
pages = {859--868},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/IPDPS49936.2021.00095},
doi = {10.1109/IPDPS49936.2021.00095},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ipps/ChenW0W0PTCWMFK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smc2/Gong0WCCWEKCCAT21,
author = {Qian Gong and
Xin Liang and
Ben Whitney and
Jong Youl Choi and
Jieyang Chen and
Lipeng Wan and
St{\'{e}}phane Ethier and
Seung{-}Hoe Ku and
Randy Michael Churchill and
Choong{-}Seock Chang and
Mark Ainsworth and
Ozan Tugluk and
Todd S. Munson and
David Pugmire and
Richard Archibald and
Scott Klasky},
editor = {Jeffrey Nichols and
Arthur Barney Maccabe and
James J. Nutaro and
Swaroop Pophale and
Pravallika Devineni and
Theresa Ahearn and
Becky Verastegui},
title = {Maintaining Trust in Reduction: Preserving the Accuracy of Quantities
of Interest for Lossy Compression},
booktitle = {Driving Scientific and Engineering Discoveries Through the Integration
of Experiment, Big Data, and Modeling and Simulation - 21st Smoky
Mountains Computational Sciences and Engineering, {SMC} 2021, Virtual
Event, October 18-20, 2021, Revised Selected Papers},
series = {Communications in Computer and Information Science},
volume = {1512},
pages = {22--39},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-3-030-96498-6\_2},
doi = {10.1007/978-3-030-96498-6\_2},
timestamp = {Sun, 26 Nov 2023 00:57:51 +0100},
biburl = {https://dblp.org/rec/conf/smc2/Gong0WCCWEKCCAT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2105-12764,
author = {Jieyang Chen and
Lipeng Wan and
Xin Liang and
Ben Whitney and
Qing Liu and
Qian Gong and
David Pugmire and
Nicholas Thompson and
Jong Youl Choi and
Matthew Wolf and
Todd S. Munson and
Ian T. Foster and
Scott Klasky},
title = {Scalable Multigrid-based Hierarchical Scientific Data Refactoring
on GPUs},
journal = {CoRR},
volume = {abs/2105.12764},
year = {2021},
url = {https://arxiv.org/abs/2105.12764},
eprinttype = {arXiv},
eprint = {2105.12764},
timestamp = {Fri, 02 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2105-12764.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/debu/LoganAACCGKEGGK20,
author = {Jeremy Logan and
Mark Ainsworth and
Chuck Atkins and
Jieyang Chen and
Jong Choi and
Junmin Gu and
James Kress and
Greg Eisenhauer and
Berk Geveci and
William F. Godoy and
Mark Kim and
Tahsin M. Kur{\c{c}} and
Qing Liu and
Kshitij Mehta and
George Ostrouchov and
Norbert Podhorszki and
David Pugmire and
Eric Suchyta and
Nicholas Thompson and
Ozan Tugluk and
Lipeng Wan and
Ruonan Wang and
Ben Whitney and
Matthew Wolf and
Kesheng Wu and
Scott Klasky},
title = {Extending the Publish/Subscribe Abstraction for High-Performance {I/O}
and Data Management at Extreme Scale},
journal = {{IEEE} Data Eng. Bull.},
volume = {43},
number = {1},
pages = {35--46},
year = {2020},
url = {http://sites.computer.org/debull/A20mar/p35.pdf},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/debu/LoganAACCGKEGGK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/softx/GodoyPWAEGDCGHH20,
author = {William F. Godoy and
Norbert Podhorszki and
Ruonan Wang and
Chuck Atkins and
Greg Eisenhauer and
Junmin Gu and
Philip E. Davis and
Jong Choi and
Kai Germaschewski and
Kevin A. Huck and
Axel Huebl and
Mark Kim and
James Kress and
Tahsin M. Kur{\c{c}} and
Qing Liu and
Jeremy Logan and
Kshitij Mehta and
George Ostrouchov and
Manish Parashar and
Franz Poeschel and
David Pugmire and
Eric Suchyta and
Keichi Takahashi and
Nick Thompson and
Seiji Tsutsumi and
Lipeng Wan and
Matthew Wolf and
Kesheng Wu and
Scott Klasky},
title = {{ADIOS} 2: The Adaptable Input Output System. {A} framework for high-performance
data management},
journal = {SoftwareX},
volume = {12},
pages = {100561},
year = {2020},
url = {https://doi.org/10.1016/j.softx.2020.100561},
doi = {10.1016/J.SOFTX.2020.100561},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/softx/GodoyPWAEGDCGHH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tos/XieOZCDKLPC20,
author = {Bing Xie and
Sarp Oral and
Christopher Zimmer and
Jong Youl Choi and
David Dillow and
Scott Klasky and
Jay F. Lofstead and
Norbert Podhorszki and
Jeffrey S. Chase},
title = {Characterizing Output Bottlenecks of a Production Supercomputer: Analysis
and Implications},
journal = {{ACM} Trans. Storage},
volume = {15},
number = {4},
pages = {26:1--26:39},
year = {2020},
url = {https://doi.org/10.1145/3335205},
doi = {10.1145/3335205},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tos/XieOZCDKLPC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ldav/KressLCKWPKCP20,
author = {James Kress and
Matthew Larsen and
Jong Choi and
Mark Kim and
Matthew Wolf and
Norbert Podhorszki and
Scott Klasky and
Hank Childs and
David Pugmire},
title = {Comparing Time-to-Solution for In Situ Visualization Paradigms at
Scale},
booktitle = {10th {IEEE} Symposium on Large Data Analysis and Visualization, {LDAV}
2020, Salt Lake City, UT, USA, October 25, 2020},
pages = {22--26},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/LDAV51489.2020.00009},
doi = {10.1109/LDAV51489.2020.00009},
timestamp = {Thu, 30 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ldav/KressLCKWPKCP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/KubeCCWCKC20,
author = {Ralph Kube and
Randy Michael Churchill and
Jong Choi and
Ruonan Wang and
Minjun Choi and
Scott Klasky and
Choong{-}Seock Chang},
title = {Near real-time analysis of big fusion data on {HPC} systems},
booktitle = {{IEEE/ACM} {HPC} for Urgent Decision Making, UrgentHPC@SC 2020, Atlanta,
GA, USA, November 13, 2020},
pages = {55--63},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/UrgentHPC51945.2020.00012},
doi = {10.1109/URGENTHPC51945.2020.00012},
timestamp = {Thu, 30 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sc/KubeCCWCKC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/scipy/KubeCCWKCCP20,
author = {Ralph Kube and
Randy Michael Churchill and
Jong Youl Choi and
Ruonan Wang and
Scott Klasky and
CS Chang and
Minjun J. Choi and
Jinseop Park},
editor = {Meghann Agarwal and
Chris Calloway and
Dillon Niederhut and
David Shupe},
title = {Leading magnetic fusion energy science into the big-and-fast data
lane},
booktitle = {Proceedings of the 19th Python in Science Conference 2020 (SciPy 2020),
Virtual Conference, July 6 - July 12, 2020},
pages = {140--147},
publisher = {scipy.org},
year = {2020},
url = {https://doi.org/10.25080/Majora-342d178e-013},
doi = {10.25080/MAJORA-342D178E-013},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/scipy/KubeCCWKCCP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smc2/PugmireKCCCGGKK20,
author = {David Pugmire and
James Kress and
Jieyang Chen and
Hank Childs and
Jong Choi and
Dmitry Ganyushin and
Berk Geveci and
Mark Kim and
Scott Klasky and
Xin Liang and
Jeremy Logan and
Nicole Marsaglia and
Kshitij Mehta and
Norbert Podhorszki and
Caitlin Ross and
Eric Suchyta and
Nick Thompson and
Steven Walton and
Lipeng Wan and
Matthew Wolf},
editor = {Jeffrey Nichols and
Becky Verastegui and
Arthur Barney Maccabe and
Oscar R. Hernandez and
Suzanne Parete{-}Koon and
Theresa Ahearn},
title = {Visualization as a Service for Scientific Data},
booktitle = {Driving Scientific and Engineering Discoveries Through the Convergence
of HPC, Big Data and {AI} - 17th Smoky Mountains Computational Sciences
and Engineering Conference, {SMC} 2020, Oak Ridge, TN, USA, August
26-28, 2020, Revised Selected Papers},
series = {Communications in Computer and Information Science},
volume = {1315},
pages = {157--174},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-63393-6\_11},
doi = {10.1007/978-3-030-63393-6\_11},
timestamp = {Sun, 26 Nov 2023 00:57:51 +0100},
biburl = {https://dblp.org/rec/conf/smc2/PugmireKCCCGGKK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smc2/ChurchillCKCK20,
author = {Randy Michael Churchill and
Jong Choi and
Ralph Kube and
Choong{-}Seock Chang and
Scott Klasky},
editor = {Jeffrey Nichols and
Becky Verastegui and
Arthur Barney Maccabe and
Oscar R. Hernandez and
Suzanne Parete{-}Koon and
Theresa Ahearn},
title = {Machine Learning for the Complex, Multi-scale Datasets in Fusion Energy},
booktitle = {Driving Scientific and Engineering Discoveries Through the Convergence
of HPC, Big Data and {AI} - 17th Smoky Mountains Computational Sciences
and Engineering Conference, {SMC} 2020, Oak Ridge, TN, USA, August
26-28, 2020, Revised Selected Papers},
series = {Communications in Computer and Information Science},
volume = {1315},
pages = {269--284},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-63393-6\_18},
doi = {10.1007/978-3-030-63393-6\_18},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/smc2/ChurchillCKCK20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smc2/ChoiWCKCPLMEPWC20,
author = {Jong Choi and
Ruonan Wang and
Randy Michael Churchill and
Ralph Kube and
Minjun Choi and
Jinseop Park and
Jeremy Logan and
Kshitij Mehta and
Greg Eisenhauer and
Norbert Podhorszki and
Matthew Wolf and
Choong{-}Seock Chang and
Scott Klasky},
editor = {Jeffrey Nichols and
Becky Verastegui and
Arthur Barney Maccabe and
Oscar R. Hernandez and
Suzanne Parete{-}Koon and
Theresa Ahearn},
title = {Data Federation Challenges in Remote Near-Real-Time Fusion Experiment
Data Processing},
booktitle = {Driving Scientific and Engineering Discoveries Through the Convergence
of HPC, Big Data and {AI} - 17th Smoky Mountains Computational Sciences
and Engineering Conference, {SMC} 2020, Oak Ridge, TN, USA, August
26-28, 2020, Revised Selected Papers},
series = {Communications in Computer and Information Science},
volume = {1315},
pages = {285--299},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-63393-6\_19},
doi = {10.1007/978-3-030-63393-6\_19},
timestamp = {Thu, 30 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/smc2/ChoiWCKCPLMEPWC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/supercomputer/KressLCKWPKCP20,
author = {James Kress and
Matthew Larsen and
Jong Choi and
Mark Kim and
Matthew Wolf and
Norbert Podhorszki and
Scott Klasky and
Hank Childs and
David Pugmire},
editor = {Ponnuswamy Sadayappan and
Bradford L. Chamberlain and
Guido Juckeland and
Hatem Ltaief},
title = {Opportunities for Cost Savings with In-Transit Visualization},
booktitle = {High Performance Computing - 35th International Conference, {ISC}
High Performance 2020, Frankfurt/Main, Germany, June 22-25, 2020,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {12151},
pages = {146--165},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-50743-5\_8},
doi = {10.1007/978-3-030-50743-5\_8},
timestamp = {Thu, 30 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/supercomputer/KressLCKWPKCP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2008-13742,
author = {Sungsoo Ha and
Wonyong Jeong and
Gyorgy Matyasfalvi and
Cong Xie and
Kevin A. Huck and
Jong Youl Choi and
Abid Malik and
Li Tang and
Hubertus Van Dam and
Line Pouchard and
Wei Xu and
Shinjae Yoo and
Nicholas D'Imperio and
Kerstin Kleese van Dam},
title = {Chimbuko: {A} Workflow-Level Scalable Performance Trace Analysis Tool},
journal = {CoRR},
volume = {abs/2008.13742},
year = {2020},
url = {https://arxiv.org/abs/2008.13742},
eprinttype = {arXiv},
eprint = {2008.13742},
timestamp = {Mon, 18 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2008-13742.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tc/HuangLCPKLOHW19,
author = {Dan Huang and
Qing Liu and
Jong Choi and
Norbert Podhorszki and
Scott Klasky and
Jeremy Logan and
George Ostrouchov and
Xubin He and
Matthew Wolf},
title = {Can {I/O} Variability Be Reduced on QoS-Less {HPC} Storage Systems?},
journal = {{IEEE} Trans. Computers},
volume = {68},
number = {5},
pages = {631--645},
year = {2019},
url = {https://doi.org/10.1109/TC.2018.2881709},
doi = {10.1109/TC.2018.2881709},
timestamp = {Thu, 30 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tc/HuangLCPKLOHW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tpds/HuangLKWCLP19,
author = {Dan Huang and
Qing Liu and
Scott Klasky and
Jun Wang and
Jong Youl Choi and
Jeremy Logan and
Norbert Podhorszki},
title = {Harnessing Data Movement in Virtual Clusters for In-Situ Execution},
journal = {{IEEE} Trans. Parallel Distributed Syst.},
volume = {30},
number = {3},
pages = {615--629},
year = {2019},
url = {https://doi.org/10.1109/TPDS.2018.2867879},
doi = {10.1109/TPDS.2018.2867879},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tpds/HuangLKWCLP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/WolfDMCEEHKLMW19,
author = {Matthew Wolf and
Julien Dominski and
Gabriele Merlo and
Jong Choi and
Greg Eisenhauer and
St{\'{e}}phane Ethier and
Kevin A. Huck and
Scott Klasky and
Jeremy Logan and
Allen D. Malony and
Chad Wood},
title = {Scalable Performance Awareness for In Situ Scientific Applications},
booktitle = {15th International Conference on eScience, eScience 2019, San Diego,
CA, USA, September 24-27, 2019},
pages = {266--276},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/eScience.2019.00037},
doi = {10.1109/ESCIENCE.2019.00037},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eScience/WolfDMCEEHKLMW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/MehtaFKAWLSCTYM19,
author = {Kshitij Mehta and
Ian T. Foster and
Scott Klasky and
Bryce Allen and
Matthew Wolf and
Jeremy Logan and
Eric Suchyta and
Jong Choi and
Keichi Takahashi and
Igor Yakushin and
Todd S. Munson},
title = {A Codesign Framework for Online Data Analysis and Reduction},
booktitle = {2019 {IEEE/ACM} Workflows in Support of Large-Scale Science, WORKS@SC
2019, Denver, CO, USA, November 17, 2019},
pages = {11--20},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/WORKS49585.2019.00007},
doi = {10.1109/WORKS49585.2019.00007},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/MehtaFKAWLSCTYM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/supercomputer/KressLCKWPKCP19,
author = {James Kress and
Matthew Larsen and
Jong Choi and
Mark Kim and
Matthew Wolf and
Norbert Podhorszki and
Scott Klasky and
Hank Childs and
David Pugmire},
editor = {Mich{\`{e}}le Weiland and
Guido Juckeland and
Carsten Trinitis and
Ponnuswamy Sadayappan},
title = {Comparing the Efficiency of In Situ Visualization Paradigms at Scale},
booktitle = {High Performance Computing - 34th International Conference, {ISC}
High Performance 2019, Frankfurt/Main, Germany, June 16-20, 2019,
Proceedings},
series = {Lecture Notes in Computer Science},
volume = {11501},
pages = {99--117},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-20656-7\_6},
doi = {10.1007/978-3-030-20656-7\_6},
timestamp = {Thu, 30 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/supercomputer/KressLCKWPKCP19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/ChoiCDKMSAACCDD18,
author = {Jong Youl Choi and
Choong{-}Seock Chang and
Julien Dominski and
Scott Klasky and
Gabriele Merlo and
Eric Suchyta and
Mark Ainsworth and
Bryce Allen and
Franck Cappello and
Michael Churchill and
Philip E. Davis and
Sheng Di and
Greg Eisenhauer and
St{\'{e}}phane Ethier and
Ian T. Foster and
Berk Geveci and
Hanqi Guo and
Kevin A. Huck and
Frank Jenko and
Mark Kim and
James Kress and
Seung{-}Hoe Ku and
Qing Liu and
Jeremy Logan and
Allen D. Malony and
Kshitij Mehta and
Kenneth Moreland and
Todd S. Munson and
Manish Parashar and
Tom Peterka and
Norbert Podhorszki and
Dave Pugmire and
Ozan Tugluk and
Ruonan Wang and
Ben Whitney and
Matthew Wolf and
Chad Wood},
title = {Coupling Exascale Multiphysics Applications: Methods and Lessons Learned},
booktitle = {14th {IEEE} International Conference on e-Science, e-Science 2018,
Amsterdam, The Netherlands, October 29 - November 1, 2018},
pages = {442--452},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/eScience.2018.00133},
doi = {10.1109/ESCIENCE.2018.00133},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eScience/ChoiCDKMSAACCDD18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdcs/KlaskyWAACEGGKK18,
author = {Scott Klasky and
Matthew Wolf and
Mark Ainsworth and
Chuck Atkins and
Jong Choi and
Greg Eisenhauer and
Berk Geveci and
William F. Godoy and
Mark Kim and
James Kress and
Tahsin M. Kur{\c{c}} and
Qing Liu and
Jeremy Logan and
Arthur B. Maccabe and
Kshitij Mehta and
George Ostrouchov and
Manish Parashar and
Norbert Podhorszki and
David Pugmire and
Eric Suchyta and
Lipeng Wan and
Ruonan Wang},
title = {A View from {ORNL:} Scientific Data Research Opportunities in the
Big Data Age},
booktitle = {38th {IEEE} International Conference on Distributed Computing Systems,
{ICDCS} 2018, Vienna, Austria, July 2-6, 2018},
pages = {1357--1368},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/ICDCS.2018.00136},
doi = {10.1109/ICDCS.2018.00136},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icdcs/KlaskyWAACEGGKK18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/Lu0HLSCPKWLQ18,
author = {Tao Lu and
Qing Liu and
Xubin He and
Huizhang Luo and
Eric Suchyta and
Jong Choi and
Norbert Podhorszki and
Scott Klasky and
Matthew Wolf and
Tong Liu and
Zhenbo Qiao},
title = {Understanding and Modeling Lossy Compression Schemes on {HPC} Scientific
Data},
booktitle = {2018 {IEEE} International Parallel and Distributed Processing Symposium,
{IPDPS} 2018, Vancouver, BC, Canada, May 21-25, 2018},
pages = {348--357},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/IPDPS.2018.00044},
doi = {10.1109/IPDPS.2018.00044},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/Lu0HLSCPKWLQ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/supercomputer/KressCKCCP18,
author = {James Kress and
Jong Choi and
Scott Klasky and
Michael Churchill and
Hank Childs and
David Pugmire},
editor = {Rio Yokota and
Mich{\`{e}}le Weiland and
John Shalf and
Sadaf R. Alam},
title = {Binning Based Data Reduction for Vector Field Data of a Particle-In-Cell
Fusion Simulation},
booktitle = {High Performance Computing - {ISC} High Performance 2018 International
Workshops, Frankfurt/Main, Germany, June 28, 2018, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {11203},
pages = {215--229},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-02465-9\_15},
doi = {10.1007/978-3-030-02465-9\_15},
timestamp = {Thu, 30 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/supercomputer/KressCKCCP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/supercomputer/KimKCPKWMHGPMGP18,
author = {Mark Kim and
James Kress and
Jong Choi and
Norbert Podhorszki and
Scott Klasky and
Matthew Wolf and
Kshitij Mehta and
Kevin A. Huck and
Berk Geveci and
Sujin Phillip and
Robert Maynard and
Hanqi Guo and
Tom Peterka and
Kenneth Moreland and
Choong{-}Seock Chang and
Julien Dominski and
Michael Churchill and
David Pugmire},
editor = {Rio Yokota and
Mich{\`{e}}le Weiland and
John Shalf and
Sadaf R. Alam},
title = {In Situ Analysis and Visualization of Fusion Simulations: Lessons
Learned},
booktitle = {High Performance Computing - {ISC} High Performance 2018 International
Workshops, Frankfurt/Main, Germany, June 28, 2018, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {11203},
pages = {230--242},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-02465-9\_16},
doi = {10.1007/978-3-030-02465-9\_16},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/supercomputer/KimKCPKWMHGPMGP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tec/ChenSGZCK17,
author = {Yang Chen and
Xiaoyan Sun and
Dunwei Gong and
Yong Zhang and
Jong Choi and
Scott Klasky},
title = {Personalized Search Inspired Fast Interactive Estimation of Distribution
Algorithm and Its Application},
journal = {{IEEE} Trans. Evol. Comput.},
volume = {21},
number = {4},
pages = {588--600},
year = {2017},
url = {https://doi.org/10.1109/TEVC.2017.2657787},
doi = {10.1109/TEVC.2017.2657787},
timestamp = {Thu, 30 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tec/ChenSGZCK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/LuSPCKLPAW17,
author = {Tao Lu and
Eric Suchyta and
David Pugmire and
Jong Choi and
Scott Klasky and
Qing Liu and
Norbert Podhorszki and
Mark Ainsworth and
Matthew Wolf},
title = {Canopus: {A} Paradigm Shift Towards Elastic Extreme-Scale Data Analytics
on {HPC} Storage},
booktitle = {2017 {IEEE} International Conference on Cluster Computing, {CLUSTER}
2017, Honolulu, HI, USA, September 5-8, 2017},
pages = {58--69},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/CLUSTER.2017.62},
doi = {10.1109/CLUSTER.2017.62},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/LuSPCKLPAW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/LoganCWOWPGKLEW17,
author = {Jeremy Logan and
Jong Youl Choi and
Matthew Wolf and
George Ostrouchov and
Lipeng Wan and
Norbert Podhorszki and
William F. Godoy and
Scott Klasky and
Erich Lohrmann and
Greg Eisenhauer and
Chad Wood and
Kevin A. Huck},
title = {Extending Skel to Support the Development and Optimization of Next
Generation {I/O} Systems},
booktitle = {2017 {IEEE} International Conference on Cluster Computing, {CLUSTER}
2017, Honolulu, HI, USA, September 5-8, 2017},
pages = {563--571},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/CLUSTER.2017.30},
doi = {10.1109/CLUSTER.2017.30},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/LoganCWOWPGKLEW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/ChoiLWOKLPKRSPC17,
author = {Jong Youl Choi and
Jeremy Logan and
Matthew Wolf and
George Ostrouchov and
Tahsin M. Kur{\c{c}} and
Qing Liu and
Norbert Podhorszki and
Scott Klasky and
Melissa Romanus and
Qian Sun and
Manish Parashar and
Randy Michael Churchill and
Choong{-}Seock Chang},
title = {{TGE:} Machine Learning Based Task Graph Embedding for Large-Scale
Topology Mapping},
booktitle = {2017 {IEEE} International Conference on Cluster Computing, {CLUSTER}
2017, Honolulu, HI, USA, September 5-8, 2017},
pages = {587--591},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/CLUSTER.2017.67},
doi = {10.1109/CLUSTER.2017.67},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/ChoiLWOKLPKRSPC17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/europar/FosterAABCCCDDD17,
author = {Ian T. Foster and
Mark Ainsworth and
Bryce Allen and
Julie Bessac and
Franck Cappello and
Jong Youl Choi and
Emil M. Constantinescu and
Philip E. Davis and
Sheng Di and
Zichao Wendy Di and
Hanqi Guo and
Scott Klasky and
Kerstin Kleese van Dam and
Tahsin M. Kur{\c{c}} and
Qing Liu and
Abid Malik and
Kshitij Mehta and
Klaus Mueller and
Todd S. Munson and
George Ostrouchov and
Manish Parashar and
Tom Peterka and
Line Pouchard and
Dingwen Tao and
Ozan Tugluk and
Stefan M. Wild and
Matthew Wolf and
Justin M. Wozniak and
Wei Xu and
Shinjae Yoo},
editor = {Francisco F. Rivera and
Tom{\'{a}}s F. Pena and
Jos{\'{e}} Carlos Cabaleiro},
title = {Computing Just What You Need: Online Data Analysis and Reduction at
Extreme Scales},
booktitle = {Euro-Par 2017: Parallel Processing - 23rd International Conference
on Parallel and Distributed Computing, Santiago de Compostela, Spain,
August 28 - September 1, 2017, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {10417},
pages = {3--19},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-64203-1\_1},
doi = {10.1007/978-3-319-64203-1\_1},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/europar/FosterAABCCCDDD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hotstorage/LuSCPKLPWA17,
author = {Tao Lu and
Eric Suchyta and
Jong Youl Choi and
Norbert Podhorszki and
Scott Klasky and
Qing Liu and
David Pugmire and
Matthew Wolf and
Mark Ainsworth},
title = {Canopus: Enabling Extreme-Scale Data Analytics on Big {HPC} Storage
via Progressive Refactoring},
booktitle = {9th {USENIX} Workshop on Hot Topics in Storage and File Systems, HotStorage
2017, Santa Clara, CA, USA, July 10-11, 2017},
publisher = {{USENIX} Association},
year = {2017},
url = {https://www.usenix.org/conference/hotstorage17/program/presentation/lu},
timestamp = {Tue, 02 Feb 2021 07:59:31 +0100},
biburl = {https://dblp.org/rec/conf/hotstorage/LuSCPKLPWA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpcc/WanWWCOK17,
author = {Lipeng Wan and
Matthew Wolf and
Feiyi Wang and
Jong Youl Choi and
George Ostrouchov and
Scott Klasky},
title = {Analysis and Modeling of the End-to-End {I/O} Performance on OLCF's
Titan Supercomputer},
booktitle = {19th {IEEE} International Conference on High Performance Computing
and Communications; 15th {IEEE} International Conference on Smart
City; 3rd {IEEE} International Conference on Data Science and Systems,
HPCC/SmartCity/DSS 2017, Bangkok, Thailand, December 18-20, 2017},
pages = {1--9},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/HPCC-SmartCity-DSS.2017.1},
doi = {10.1109/HPCC-SMARTCITY-DSS.2017.1},
timestamp = {Wed, 16 Oct 2019 14:14:52 +0200},
biburl = {https://dblp.org/rec/conf/hpcc/WanWWCOK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/XieHCCKLO17,
author = {Bing Xie and
Yezhou Huang and
Jeffrey S. Chase and
Jong Youl Choi and
Scott Klasky and
Jay F. Lofstead and
Sarp Oral},
editor = {H. Howie Huang and
Jon B. Weissman and
Adriana Iamnitchi and
Alexandru Iosup},
title = {Predicting Output Performance of a Petascale Supercomputer},
booktitle = {Proceedings of the 26th International Symposium on High-Performance
Parallel and Distributed Computing, {HPDC} 2017, Washington, DC, USA,
June 26-30, 2017},
pages = {181--192},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3078597.3078614},
doi = {10.1145/3078597.3078614},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/XieHCCKLO17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/LiuPCLWKKH17,
author = {Qing Liu and
Norbert Podhorszki and
Jong Youl Choi and
Jeremy Logan and
Matthew Wolf and
Scott Klasky and
Tahsin M. Kur{\c{c}} and
Xubin He},
editor = {Petros Koumoutsakos and
Michael Lees and
Valeria V. Krzhizhanovskaya and
Jack J. Dongarra and
Peter M. A. Sloot},
title = {StoreRush: An Application-Level Approach to Harvesting Idle Storage
in a Best Effort Environment},
booktitle = {International Conference on Computational Science, {ICCS} 2017, 12-14
June 2017, Zurich, Switzerland},
series = {Procedia Computer Science},
volume = {108},
pages = {475--484},
publisher = {Elsevier},
year = {2017},
url = {https://doi.org/10.1016/j.procs.2017.05.005},
doi = {10.1016/J.PROCS.2017.05.005},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iccS/LiuPCLWKKH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdcs/WanWWCOK17,
author = {Lipeng Wan and
Matthew Wolf and
Feiyi Wang and
Jong Youl Choi and
George Ostrouchov and
Scott Klasky},
editor = {Kisung Lee and
Ling Liu},
title = {Comprehensive Measurement and Analysis of the User-Perceived {I/O}
Performance in a Production Leadership-Class Storage System},
booktitle = {37th {IEEE} International Conference on Distributed Computing Systems,
{ICDCS} 2017, Atlanta, GA, USA, June 5-8, 2017},
pages = {1022--1031},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/ICDCS.2017.257},
doi = {10.1109/ICDCS.2017.257},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icdcs/WanWWCOK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdcs/KlaskySALWWCFKL17,
author = {Scott Klasky and
Eric Suchyta and
Mark Ainsworth and
Qing Liu and
Ben Whitney and
Matthew Wolf and
Jong Youl Choi and
Ian T. Foster and
Mark Kim and
Jeremy Logan and
Kshitij Mehta and
Todd S. Munson and
George Ostrouchov and
Manish Parashar and
Norbert Podhorszki and
David Pugmire and
Lipeng Wan},
editor = {Kisung Lee and
Ling Liu},
title = {Exacution: Enhancing Scientific Data Management for Exascale},
booktitle = {37th {IEEE} International Conference on Distributed Computing Systems,
{ICDCS} 2017, Atlanta, GA, USA, June 5-8, 2017},
pages = {1927--1937},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/ICDCS.2017.256},
doi = {10.1109/ICDCS.2017.256},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icdcs/KlaskySALWWCFKL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/supercomputer/HueblWSMPCKB17,
author = {Axel Huebl and
Ren{\'{e}} Widera and
Felix Schmitt and
Alexander Matthes and
Norbert Podhorszki and
Jong Youl Choi and
Scott Klasky and
Michael Bussmann},
editor = {Julian M. Kunkel and
Rio Yokota and
Michela Taufer and
John Shalf},
title = {On the Scalability of Data Reduction Techniques in Current and Upcoming
{HPC} Systems from an Application Perspective},
booktitle = {High Performance Computing - {ISC} High Performance 2017 International
Workshops, DRBSD, ExaComm, HCPM, HPC-IODC, IWOPH, IXPUG, P{\^{}}3MA,
VHPC, Visualization at Scale, WOPSSS, Frankfurt, Germany, June 18-22,
2017, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {10524},
pages = {15--29},
publisher = {Springer},
year = {2017},
url = {https://doi.org/10.1007/978-3-319-67630-2\_2},
doi = {10.1007/978-3-319-67630-2\_2},
timestamp = {Mon, 16 Sep 2019 15:29:34 +0200},
biburl = {https://dblp.org/rec/conf/supercomputer/HueblWSMPCKB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/HueblWSMPCKB17,
author = {Axel Huebl and
Ren{\'{e}} Widera and
Felix Schmitt and
Alexander Matthes and
Norbert Podhorszki and
Jong Youl Choi and
Scott Klasky and
Michael Bussmann},
title = {On the Scalability of Data Reduction Techniques in Current and Upcoming
{HPC} Systems from an Application Perspective},
journal = {CoRR},
volume = {abs/1706.00522},
year = {2017},
url = {http://arxiv.org/abs/1706.00522},
eprinttype = {arXiv},
eprint = {1706.00522},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/HueblWSMPCKB17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tbd/WuWSCCSCK16,
author = {Lingfei Wu and
K. John Wu and
Alex Sim and
Michael Churchill and
Jong Youl Choi and
Andreas Stathopoulos and
Choong{-}Seock Chang and
Scott Klasky},
title = {Towards Real-Time Detection and Tracking of Spatio-Temporal Features:
Blob-Filaments in Fusion Plasma},
journal = {{IEEE} Trans. Big Data},
volume = {2},
number = {3},
pages = {262--275},
year = {2016},
url = {https://doi.org/10.1109/TBDATA.2016.2599929},
doi = {10.1109/TBDATA.2016.2599929},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tbd/WuWSCCSCK16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cec/ZhangXSGZC16,
author = {Pengfei Zhang and
Ruidong Xu and
Xiaoyan Sun and
Dunwei Gong and
Yong Zhang and
Jong Choi},
title = {A synthesized ranking-assisted {NSGA-II} for interval multi-objective
optimization},
booktitle = {{IEEE} Congress on Evolutionary Computation, {CEC} 2016, Vancouver,
BC, Canada, July 24-29, 2016},
pages = {861--868},
publisher = {{IEEE}},
year = {2016},
url = {https://doi.org/10.1109/CEC.2016.7743881},
doi = {10.1109/CEC.2016.7743881},
timestamp = {Thu, 30 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cec/ZhangXSGZC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/RomanusZJSBPCJH16,
author = {Melissa Romanus and
Fan Zhang and
Tong Jin and
Qian Sun and
Hoang Bui and
Manish Parashar and
Jong Youl Choi and
Saloman Janhunen and
Robert Hager and
Scott Klasky and
Choong{-}Seock Chang and
Ivan Rodero},
editor = {Esma Yildirim and
Tevfik Kosar},
title = {Persistent Data Staging Services for Data Intensive In-situ Scientific
Workflows},
booktitle = {Proceedings of the {ACM} International Workshop on Data-Intensive
Distributed Computing, DIDC@HPDC 2016, Kyoto, Japan, June 1, 2016},
pages = {37--44},
publisher = {{ACM}},
year = {2016},
url = {https://doi.org/10.1145/2912152.2912157},
doi = {10.1145/2912152.2912157},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hpdc/RomanusZJSBPCJH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/PugmireKCKKCWEC16,
author = {David Pugmire and
James Kress and
Jong Youl Choi and
Scott Klasky and
Tahsin M. Kur{\c{c}} and
Michael Churchill and
Matthew Wolf and
Greg Eisenhauer and
Hank Childs and
Kesheng Wu and
Alexander Sim and
Junmin Gu and
Jonathan Low},
title = {Visualization and Analysis for Near-Real-Time Decision Making in Distributed
Workflows},
booktitle = {2016 {IEEE} International Parallel and Distributed Processing Symposium
Workshops, {IPDPS} Workshops 2016, Chicago, IL, USA, May 23-27, 2016},
pages = {1007--1013},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/IPDPSW.2016.175},
doi = {10.1109/IPDPSW.2016.175},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/PugmireKCKKCWEC16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppopp/JinLMLLPCK15,
author = {Ye Jin and
Mingliang Liu and
Xiaosong Ma and
Qing Liu and
Jeremy Logan and
Norbert Podhorszki and
Jong Youl Choi and
Scott Klasky},
editor = {Albert Cohen and
David Grove},
title = {Combining phase identification and statistic modeling for automated
parallel benchmark generation},
booktitle = {Proceedings of the 20th {ACM} {SIGPLAN} Symposium on Principles and
Practice of Parallel Programming, PPoPP 2015, San Francisco, CA, USA,
February 7-11, 2015},
pages = {269--270},
publisher = {{ACM}},
year = {2015},
url = {https://doi.org/10.1145/2688500.2688541},
doi = {10.1145/2688500.2688541},
timestamp = {Sun, 12 Jun 2022 19:46:08 +0200},
biburl = {https://dblp.org/rec/conf/ppopp/JinLMLLPCK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/KressKPCCP15,
author = {James Kress and
Scott Klasky and
Norbert Podhorszki and
Jong Youl Choi and
Hank Childs and
David Pugmire},
editor = {Gunther H. Weber},
title = {Loosely Coupled In Situ Visualization: {A} Perspective on Why It's
Here to Stay},
booktitle = {Proceedings of the First Workshop on In Situ Infrastructures for Enabling
Extreme-Scale Analysis and Visualization, {ISAV} 2015, Austin, TX,
USA, November 15-20, 2015},
pages = {1--6},
publisher = {{ACM}},
year = {2015},
url = {https://doi.org/10.1145/2828612.2828623},
doi = {10.1145/2828612.2828623},
timestamp = {Tue, 06 Nov 2018 16:59:28 +0100},
biburl = {https://dblp.org/rec/conf/sc/KressKPCCP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sigmetrics/JinMLLLPCK15,
author = {Ye Jin and
Xiaosong Ma and
Mingliang Liu and
Qing Liu and
Jeremy Logan and
Norbert Podhorszki and
Jong Youl Choi and
Scott Klasky},
editor = {Bill Lin and
Jun (Jim) Xu and
Sudipta Sengupta and
Devavrat Shah},
title = {Combining Phase Identification and Statistic Modeling for Automated
Parallel Benchmark Generation},
booktitle = {Proceedings of the 2015 {ACM} {SIGMETRICS} International Conference
on Measurement and Modeling of Computer Systems, Portland, OR, USA,
June 15-19, 2015},
pages = {309--320},
publisher = {{ACM}},
year = {2015},
url = {https://doi.org/10.1145/2745844.2745876},
doi = {10.1145/2745844.2745876},
timestamp = {Mon, 01 Aug 2022 08:51:52 +0200},
biburl = {https://dblp.org/rec/conf/sigmetrics/JinMLLLPCK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/WuWSCCSCK15,
author = {Lingfei Wu and
Kesheng Wu and
Alex Sim and
Michael Churchill and
Jong Youl Choi and
Andreas Stathopoulos and
Choong{-}Seock Chang and
Scott Klasky},
title = {Towards Real-Time Detection and Tracking of Blob-Filaments in Fusion
Plasma Big Data},
journal = {CoRR},
volume = {abs/1505.03532},
year = {2015},
url = {http://arxiv.org/abs/1505.03532},
eprinttype = {arXiv},
eprint = {1505.03532},
timestamp = {Wed, 01 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/WuWSCCSCK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/LiuLTAPCKTLOPSSSWWY14,
author = {Qing Liu and
Jeremy Logan and
Yuan Tian and
Hasan Abbasi and
Norbert Podhorszki and
Jong Youl Choi and
Scott Klasky and
Roselyne Tchoua and
Jay F. Lofstead and
Ron A. Oldfield and
Manish Parashar and
Nagiza F. Samatova and
Karsten Schwan and
Arie Shoshani and
Matthew Wolf and
Kesheng Wu and
Weikuan Yu},
title = {Hello {ADIOS:} the challenges and lessons of developing leadership
class {I/O} frameworks},
journal = {Concurr. Comput. Pract. Exp.},
volume = {26},
number = {7},
pages = {1453--1473},
year = {2014},
url = {https://doi.org/10.1002/cpe.3125},
doi = {10.1002/CPE.3125},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/concurrency/LiuLTAPCKTLOPSSSWWY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppopp/ZhangLKWSECP14,
author = {Yanwei Zhang and
Qing Liu and
Scott Klasky and
Matthew Wolf and
Karsten Schwan and
Greg Eisenhauer and
Jong Youl Choi and
Norbert Podhorszki},
editor = {Manoj Kumar and
Joefon Jann and
Priya Nagpurkar},
title = {Active workflow system for near real-time extreme-scale science},
booktitle = {Proceedings of the first workshop on Parallel programming for analytics
applications, {PPAA} 2014, Orlando, Florida, USA, February 16, 2014},
pages = {53--62},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2567634.2567637},
doi = {10.1145/2567634.2567637},
timestamp = {Sat, 26 Aug 2023 22:41:56 +0200},
biburl = {https://dblp.org/rec/conf/ppopp/ZhangLKWSECP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/TchouaCKLLMMPPPW13,
author = {Roselyne Tchoua and
Jong Youl Choi and
Scott Klasky and
Qing Liu and
Jeremy Logan and
Kenneth Moreland and
Jingqing Mu and
Manish Parashar and
Norbert Podhorszki and
David Pugmire and
Matthew Wolf},
title = {{ADIOS} Visualization Schema: {A} First Step Towards Improving Interdisciplinary
Collaboration in High Performance Computing},
booktitle = {9th {IEEE} International Conference on eScience, eScience 2013, Beijing,
China, October 22-25, 2013},
pages = {27--34},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/eScience.2013.24},
doi = {10.1109/ESCIENCE.2013.24},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eScience/TchouaCKLLMMPPPW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/ChoiAPPKCPWQF12,
author = {Jong Youl Choi and
Hasan Abbasi and
David Pugmire and
Norbert Podhorszki and
Scott Klasky and
Cristian Capdevila and
Manish Parashar and
Matthew Wolf and
Judy Qiu and
Geoffrey C. Fox},
title = {Mining hidden mixture context with {ADIOS-P} to improve predictive
pre-fetcher accuracy},
booktitle = {8th {IEEE} International Conference on E-Science, e-Science 2012,
Chicago, IL, USA, October 8-12, 2012},
pages = {1--8},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/eScience.2012.6404418},
doi = {10.1109/ESCIENCE.2012.6404418},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eScience/ChoiAPPKCPWQF12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/ChoiBQCW11,
author = {Jong Youl Choi and
Seung{-}Hee Bae and
Judy Qiu and
Bin Chen and
David J. Wild},
title = {Browsing large-scale cheminformatics data with dimension reduction},
journal = {Concurr. Comput. Pract. Exp.},
volume = {23},
number = {17},
pages = {2315--2325},
year = {2011},
url = {https://doi.org/10.1002/cpe.1781},
doi = {10.1002/CPE.1781},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/concurrency/ChoiBQCW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/GunarathneWCBQ11,
author = {Thilina Gunarathne and
Tak{-}Lon Wu and
Jong Youl Choi and
Seung{-}Hee Bae and
Judy Qiu},
title = {Cloud computing paradigms for pleasingly parallel biomedical applications},
journal = {Concurr. Comput. Pract. Exp.},
volume = {23},
number = {17},
pages = {2338--2354},
year = {2011},
url = {https://doi.org/10.1002/cpe.1780},
doi = {10.1002/CPE.1780},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/concurrency/GunarathneWCBQ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/QiuEGCBLZWREHF10,
author = {Judy Qiu and
Jaliya Ekanayake and
Thilina Gunarathne and
Jong Youl Choi and
Seung{-}Hee Bae and
Hui Li and
Bingjing Zhang and
Tak{-}Lon Wu and
Yang Ruan and
Saliya Ekanayake and
Adam Hughes and
Geoffrey C. Fox},
title = {Hybrid cloud and cluster computing paradigms for life science applications},
journal = {{BMC} Bioinform.},
volume = {11},
number = {{S-12}},
pages = {S3},
year = {2010},
url = {https://doi.org/10.1186/1471-2105-11-S12-S3},
doi = {10.1186/1471-2105-11-S12-S3},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/QiuEGCBLZWREHF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/ChoiBQF10,
author = {Jong Youl Choi and
Seung{-}Hee Bae and
Xiaohong Qiu and
Geoffrey C. Fox},
title = {High Performance Dimension Reduction and Visualization for Large High-Dimensional
Data Analysis},
booktitle = {10th {IEEE/ACM} International Conference on Cluster, Cloud and Grid
Computing, CCGrid 2010, 17-20 May 2010, Melbourne, Victoria, Australia},
pages = {331--340},
publisher = {{IEEE} Computer Society},
year = {2010},
url = {https://doi.org/10.1109/CCGRID.2010.104},
doi = {10.1109/CCGRID.2010.104},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/ChoiBQF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/BaeCQF10,
author = {Seung{-}Hee Bae and
Jong Youl Choi and
Judy Qiu and
Geoffrey C. Fox},
editor = {Salim Hariri and
Kate Keahey},
title = {Dimension reduction and visualization of large high-dimensional data
via interpolation},
booktitle = {Proceedings of the 19th {ACM} International Symposium on High Performance
Distributed Computing, {HPDC} 2010, Chicago, Illinois, USA, June 21-25,
2010},
pages = {203--214},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1851476.1851501},
doi = {10.1145/1851476.1851501},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hpdc/BaeCQF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpdc/ChoiBQFCW10,
author = {Jong Youl Choi and
Seung{-}Hee Bae and
Judy Qiu and
Geoffrey C. Fox and
Bin Chen and
David J. Wild},
editor = {Salim Hariri and
Kate Keahey},
title = {Browsing large scale cheminformatics data with dimension reduction},
booktitle = {Proceedings of the 19th {ACM} International Symposium on High Performance
Distributed Computing, {HPDC} 2010, Chicago, Illinois, USA, June 21-25,
2010},
pages = {503--506},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1851476.1851549},
doi = {10.1145/1851476.1851549},
timestamp = {Wed, 26 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hpdc/ChoiBQFCW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:journals/procedia/ChoiQPF10,
author = {Jong Youl Choi and
Judy Qiu and
Marlon E. Pierce and
Geoffrey C. Fox},
editor = {Peter M. A. Sloot and
G. Dick van Albada and
Jack J. Dongarra},
title = {Generative topographic mapping by deterministic annealing},
booktitle = {Proceedings of the International Conference on Computational Science,
{ICCS} 2010, University of Amsterdam, The Netherlands, May 31 - June
2, 2010},
series = {Procedia Computer Science},
volume = {1},
number = {1},
pages = {47--56},
publisher = {Elsevier},
year = {2010},
url = {https://doi.org/10.1016/j.procs.2010.04.007},
doi = {10.1016/J.PROCS.2010.04.007},
timestamp = {Thu, 08 Jul 2021 14:29:22 +0200},
biburl = {https://dblp.org/rec/journals/procedia/ChoiQPF10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/PierceFCGGM09,
author = {Marlon E. Pierce and
Geoffrey C. Fox and
Jong Youl Choi and
Zhenhua Guo and
Xiaoming Gao and
Yu Ma},
title = {Using Web 2.0 for scientific applications and scientific communities},
journal = {Concurr. Comput. Pract. Exp.},
volume = {21},
number = {5},
pages = {583--603},
year = {2009},
url = {https://doi.org/10.1002/cpe.1365},
doi = {10.1002/CPE.1365},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/concurrency/PierceFCGGM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cloudcom/FoxQBCEGRTDL09,
author = {Geoffrey C. Fox and
Xiaohong Qiu and
Scott Beason and
Jong Youl Choi and
Jaliya Ekanayake and
Thilina Gunarathne and
Mina Rho and
Haixu Tang and
Neil Devadasan and
Gilbert Liu},
editor = {Martin Gilje Jaatun and
Gansen Zhao and
Chunming Rong},
title = {Biomedical Case Studies in Data Intensive Computing},
booktitle = {Cloud Computing, First International Conference, CloudCom 2009, Beijing,
China, December 1-4, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5931},
pages = {2--18},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-10665-1\_2},
doi = {10.1007/978-3-642-10665-1\_2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cloudcom/FoxQBCEGRTDL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tissec/WangLCXRK08,
author = {XiaoFeng Wang and
Zhuowei Li and
Jong Youl Choi and
Jun Xu and
Michael K. Reiter and
Chongkyung Kil},
title = {Fast and Black-box Exploit Detection and Signature Generation for
Commodity Software},
journal = {{ACM} Trans. Inf. Syst. Secur.},
volume = {12},
number = {2},
pages = {11:1--11:35},
year = {2008},
url = {https://doi.org/10.1145/1455518.1455523},
doi = {10.1145/1455518.1455523},
timestamp = {Wed, 02 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/tissec/WangLCXRK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cts/PierceFRMC08,
author = {Marlon E. Pierce and
Geoffrey C. Fox and
Joshua J. Rosen and
Siddharth Maini and
Jong Youl Choi},
editor = {William K. McQuay and
Waleed W. Smari},
title = {Social networking for scientists using tagging and shared bookmarks:
a Web 2.0 application},
booktitle = {2008 International Symposium on Collaborative Technologies and Systems,
{CTS} 2008, Irvine, California, USA, May 19-23, 2008},
pages = {257--266},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/CTS.2008.4543939},
doi = {10.1109/CTS.2008.4543939},
timestamp = {Wed, 16 Oct 2019 14:14:53 +0200},
biburl = {https://dblp.org/rec/conf/cts/PierceFRMC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/YangCCPGK08,
author = {Youngik Yang and
Jong Youl Choi and
Kwangmin Choi and
Marlon E. Pierce and
Dennis Gannon and
Sun Kim},
title = {BioVLAB-Microarray: Microarray Data Analysis in Virtual Environment},
booktitle = {Fourth International Conference on e-Science, e-Science 2008, 7-12
December 2008, Indianapolis, IN, {USA}},
pages = {159--165},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/eScience.2008.57},
doi = {10.1109/ESCIENCE.2008.57},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eScience/YangCCPGK08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eScience/QiuFBCER08,
author = {Xiaohong Qiu and
Geoffrey C. Fox and
Seung{-}Hee Bae and
Jong Youl Choi and
Jaliya Ekanayake and
Yang Ruan},
title = {{SALSA} Project: Parallel Data Mining of GIS, Web, Medical, Physics,
Chemical, and Biology Data},
booktitle = {Fourth International Conference on e-Science, e-Science 2008, 7-12
December 2008, Indianapolis, IN, {USA}},
pages = {335--336},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/eScience.2008.175},
doi = {10.1109/ESCIENCE.2008.175},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/eScience/QiuFBCER08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ndss/WangLLC08,
author = {XiaoFeng Wang and
Zhuowei Li and
Ninghui Li and
Jong Youl Choi},
title = {{PRECIP:} Towards Practical and Retrofittable Confidential Information
Protection},
booktitle = {Proceedings of the Network and Distributed System Security Symposium,
{NDSS} 2008, San Diego, California, USA, 10th February - 13th February
2008},
publisher = {The Internet Society},
year = {2008},
url = {https://www.ndss-symposium.org/ndss2008/precip-towards-practical-and-retrofittable-confidential-information-protection/},
timestamp = {Wed, 02 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ndss/WangLLC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/raid/LiWC07,
author = {Zhuowei Li and
XiaoFeng Wang and
Jong Youl Choi},
editor = {Christopher Kr{\"{u}}gel and
Richard Lippmann and
Andrew J. Clark},
title = {SpyShield: Preserving Privacy from Spy Add-Ons},
booktitle = {Recent Advances in Intrusion Detection, 10th International Symposium,
{RAID} 2007, Gold Goast, Australia, September 5-7, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4637},
pages = {296--316},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-74320-0\_16},
doi = {10.1007/978-3-540-74320-0\_16},
timestamp = {Wed, 02 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/raid/LiWC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccs/WangLXRKC06,
author = {XiaoFeng Wang and
Zhuowei Li and
Jun Xu and
Michael K. Reiter and
Chongkyung Kil and
Jong Youl Choi},
editor = {Ari Juels and
Rebecca N. Wright and
Sabrina De Capitani di Vimercati},
title = {Packet vaccine: black-box exploit detection and signature generation},
booktitle = {Proceedings of the 13th {ACM} Conference on Computer and Communications
Security, {CCS} 2006, Alexandria, VA, USA, October 30 - November 3,
2006},
pages = {37--46},
publisher = {{ACM}},
year = {2006},
url = {https://doi.org/10.1145/1180405.1180412},
doi = {10.1145/1180405.1180412},
timestamp = {Wed, 02 Nov 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccs/WangLXRKC06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/dasc/ChoiGJ06,
author = {Jong Youl Choi and
Philippe Golle and
Markus Jakobsson},
title = {Tamper-Evident Digital Signature Protecting Certification Authorities
Against Malware},
booktitle = {Second International Symposium on Dependable Autonomic and Secure
Computing {(DASC} 2006), 29 September - 1 October 2006, Indianapolis,
Indiana, {USA}},
pages = {37--44},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/DASC.2006.46},
doi = {10.1109/DASC.2006.46},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/dasc/ChoiGJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/fc/ChoiGJ06,
author = {Jong Youl Choi and
Philippe Golle and
Markus Jakobsson},
editor = {Giovanni Di Crescenzo and
Aviel D. Rubin},
title = {Auditable Privacy: On Tamper-Evident Mix Networks},
booktitle = {Financial Cryptography and Data Security, 10th International Conference,
{FC} 2006, Anguilla, British West Indies, February 27-March 2, 2006,
Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {4107},
pages = {126--141},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11889663\_9},
doi = {10.1007/11889663\_9},
timestamp = {Tue, 14 May 2019 10:00:38 +0200},
biburl = {https://dblp.org/rec/conf/fc/ChoiGJ06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mswim/ChoiJW05,
author = {Jong Youl Choi and
Markus Jakobsson and
Susanne Wetzel},
editor = {Azzedine Boukerche and
Regina Borges de Araujo},
title = {Balancing auditability and privacy in vehicular networks},
booktitle = {Q2SWinet'05 - Proceedings of the First {ACM} Workshop on {Q2S} and
Security for Wireless and Mobile Networks, Montreal, Quebec, Canada,
October 13, 2005},
pages = {79--87},
publisher = {{ACM}},
year = {2005},
url = {https://doi.org/10.1145/1089761.1089775},
doi = {10.1145/1089761.1089775},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mswim/ChoiJW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/iacr/ChoiGJ05,
author = {Jong Youl Choi and
Philippe Golle and
Markus Jakobsson},
title = {Tamper-Evident Digital Signatures: Protecting Certification Authorities
Against Malware},
journal = {{IACR} Cryptol. ePrint Arch.},
pages = {147},
year = {2005},
url = {http://eprint.iacr.org/2005/147},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/iacr/ChoiGJ05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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