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ORCIDBibTeX records: Davide Chicco
@article{DBLP:journals/jhir/CeronoMC24,
author = {Gabriel Cerono and
Ombretta Melaiu and
Davide Chicco},
title = {Clinical Feature Ranking Based on Ensemble Machine Learning Reveals
Top Survival Factors for Glioblastoma Multiforme},
journal = {J. Heal. Informatics Res.},
volume = {8},
number = {1},
pages = {1--18},
year = {2024},
url = {https://doi.org/10.1007/s41666-023-00138-1},
doi = {10.1007/S41666-023-00138-1},
timestamp = {Fri, 08 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jhir/CeronoMC24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerj-cs/CeronoC24,
author = {Gabriel Cerono and
Davide Chicco},
title = {Ensemble machine learning reveals key features for diabetes duration
from electronic health records},
journal = {PeerJ Comput. Sci.},
volume = {10},
pages = {e1896},
year = {2024},
url = {https://doi.org/10.7717/peerj-cs.1896},
doi = {10.7717/PEERJ-CS.1896},
timestamp = {Tue, 26 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/peerj-cs/CeronoC24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChiccoJ23,
author = {Davide Chicco and
Giuseppe Jurman},
title = {Ten simple rules for providing bioinformatics support within a hospital},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00326-0},
doi = {10.1186/S13040-023-00326-0},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChiccoJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChiccoJ23a,
author = {Davide Chicco and
Giuseppe Jurman},
title = {The Matthews correlation coefficient {(MCC)} should replace the {ROC}
{AUC} as the standard metric for assessing binary classification},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00322-4},
doi = {10.1186/S13040-023-00322-4},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChiccoJ23a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChiccoSJ23,
author = {Davide Chicco and
Tiziana Sanavia and
Giuseppe Jurman},
title = {Signature literature review reveals AHCY, DPYSL3, and {NME1} as the
most recurrent prognostic genes for neuroblastoma},
journal = {BioData Min.},
volume = {16},
number = {1},
year = {2023},
url = {https://doi.org/10.1186/s13040-023-00325-1},
doi = {10.1186/S13040-023-00325-1},
timestamp = {Sat, 29 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChiccoSJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ChiccoJ23,
author = {Davide Chicco and
Giuseppe Jurman},
title = {A statistical comparison between Matthews correlation coefficient
(MCC), prevalence threshold, and Fowlkes-Mallows index},
journal = {J. Biomed. Informatics},
volume = {144},
pages = {104426},
year = {2023},
url = {https://doi.org/10.1016/j.jbi.2023.104426},
doi = {10.1016/J.JBI.2023.104426},
timestamp = {Thu, 14 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/ChiccoJ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChiccoS23,
author = {Davide Chicco and
Rakesh Shiradkar},
title = {Ten quick tips for computational analysis of medical images},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {1},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1010778},
doi = {10.1371/JOURNAL.PCBI.1010778},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ChiccoS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChiccoCA23,
author = {Davide Chicco and
Fabio Cumbo and
Claudio Angione},
title = {Ten quick tips for avoiding pitfalls in multi-omics data integration
analyses},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {7},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1011224},
doi = {10.1371/JOURNAL.PCBI.1011224},
timestamp = {Sat, 14 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ChiccoCA23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChiccoPC23,
author = {Davide Chicco and
Umberto Ferraro Petrillo and
Giuseppe Cattaneo},
title = {Ten quick tips for bioinformatics analyses using an Apache Spark distributed
computing environment},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {7},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1011272},
doi = {10.1371/JOURNAL.PCBI.1011272},
timestamp = {Sat, 14 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ChiccoPC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChiccoSN23,
author = {Davide Chicco and
Simone Spolaor and
Marco S. Nobile},
title = {Ten quick tips for fuzzy logic modeling of biomedical systems},
journal = {PLoS Comput. Biol.},
volume = {19},
number = {12},
year = {2023},
url = {https://doi.org/10.1371/journal.pcbi.1011700},
doi = {10.1371/JOURNAL.PCBI.1011700},
timestamp = {Sat, 16 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/ChiccoSN23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/aixas/RibinoNPSGC23,
author = {Patrizia Ribino and
Claudia Di Napoli and
Giovanni Paragliola and
Luca Serino and
Francesca Gasparini and
Davide Chicco},
editor = {Francesca Fracasso and
Francesca Gasparini and
Frida Milella},
title = {Exploratory analysis of longitudinal data of patients with dementia
through unsupervised techniques},
booktitle = {Proceedings of the 4th Italian Workshop on Artificial Intelligence
for an Ageing Society co-located with 22nd International Conference
of the Italian Association for Artificial Intelligence (AIxIA 2023),
Rome, Italy, November 09, 2023},
series = {{CEUR} Workshop Proceedings},
volume = {3623},
pages = {67--87},
publisher = {CEUR-WS.org},
year = {2023},
url = {https://ceur-ws.org/Vol-3623/AIxAS\_2023\_paper\_8.pdf},
timestamp = {Sat, 27 Jan 2024 16:34:35 +0100},
biburl = {https://dblp.org/rec/conf/aixas/RibinoNPSGC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChiccoARJ22,
author = {Davide Chicco and
Abbas Alameer and
Sara Rahmati and
Giuseppe Jurman},
title = {Towards a potential pan-cancer prognostic signature for gene expression
based on probesets and ensemble machine learning},
journal = {BioData Min.},
volume = {15},
number = {1},
year = {2022},
url = {https://doi.org/10.1186/s13040-022-00312-y},
doi = {10.1186/S13040-022-00312-Y},
timestamp = {Mon, 05 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/ChiccoARJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/AlameerC22,
author = {Abbas Alameer and
Davide Chicco},
title = {geoCancerPrognosticDatasetsRetriever: a bioinformatics tool to easily
identify cancer prognostic datasets on Gene Expression Omnibus {(GEO)}},
journal = {Bioinform.},
volume = {38},
number = {6},
pages = {1761--1763},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btab852},
doi = {10.1093/BIOINFORMATICS/BTAB852},
timestamp = {Fri, 01 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/AlameerC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/datascience/ChiccoCC22,
author = {Davide Chicco and
Gabriel Cerono and
Davide Cangelosi},
title = {A Survey on Publicly Available Open Datasets Derived From Electronic
Health Records (EHRs) of Patients with Neuroblastoma},
journal = {Data Sci. J.},
volume = {21},
pages = {17},
year = {2022},
url = {https://doi.org/10.5334/dsj-2022-017},
doi = {10.5334/DSJ-2022-017},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/datascience/ChiccoCC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fbinf/ChiccoJ22,
author = {Davide Chicco and
Giuseppe Jurman},
title = {A brief survey of tools for genomic regions enrichment analysis},
journal = {Frontiers Bioinform.},
volume = {2},
year = {2022},
url = {https://doi.org/10.3389/fbinf.2022.968327},
doi = {10.3389/FBINF.2022.968327},
timestamp = {Tue, 04 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fbinf/ChiccoJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fdata/ChiccoJ22,
author = {Davide Chicco and
Giuseppe Jurman},
title = {The {ABC} recommendations for validation of supervised machine learning
results in biomedical sciences},
journal = {Frontiers Big Data},
volume = {5},
year = {2022},
url = {https://doi.org/10.3389/fdata.2022.979465},
doi = {10.3389/FDATA.2022.979465},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/fdata/ChiccoJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/firai/ChiccoJ22,
author = {Davide Chicco and
Giuseppe Jurman},
title = {An Invitation to Greater Use of Matthews Correlation Coefficient in
Robotics and Artificial Intelligence},
journal = {Frontiers Robotics {AI}},
volume = {9},
pages = {876814},
year = {2022},
url = {https://doi.org/10.3389/frobt.2022.876814},
doi = {10.3389/FROBT.2022.876814},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/firai/ChiccoJ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChiccoA22,
author = {Davide Chicco and
Giuseppe Agapito},
title = {Nine quick tips for pathway enrichment analysis},
journal = {PLoS Comput. Biol.},
volume = {18},
number = {8},
year = {2022},
url = {https://doi.org/10.1371/journal.pcbi.1010348},
doi = {10.1371/JOURNAL.PCBI.1010348},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ChiccoA22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChiccoB22,
author = {Davide Chicco and
Philip E. Bourne},
title = {Ten simple rules for organizing a special session at a scientific
conference},
journal = {PLoS Comput. Biol.},
volume = {18},
number = {8},
year = {2022},
url = {https://doi.org/10.1371/journal.pcbi.1010395},
doi = {10.1371/JOURNAL.PCBI.1010395},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ChiccoB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ChiccoOT22,
author = {Davide Chicco and
Luca Oneto and
Erica Tavazzi},
title = {Eleven quick tips for data cleaning and feature engineering},
journal = {PLoS Comput. Biol.},
volume = {18},
number = {12},
pages = {1010718},
year = {2022},
url = {https://doi.org/10.1371/journal.pcbi.1010718},
doi = {10.1371/JOURNAL.PCBI.1010718},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ChiccoOT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/cibb/2021,
editor = {Davide Chicco and
Angelo M. Facchiano and
Erica Tavazzi and
Enrico Longato and
Martina Vettoretti and
Anna Bernasconi and
Simone Avesani and
Paolo Cazzaniga},
title = {Computational Intelligence Methods for Bioinformatics and Biostatistics
- 17th International Meeting, {CIBB} 2021, Virtual Event, November
15-17, 2021, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {13483},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-20837-9},
doi = {10.1007/978-3-031-20837-9},
isbn = {978-3-031-20836-2},
timestamp = {Thu, 01 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cibb/2021.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/access/ChiccoJ21,
author = {Davide Chicco and
Giuseppe Jurman},
title = {An Ensemble Learning Approach for Enhanced Classification of Patients
With Hepatitis and Cirrhosis},
journal = {{IEEE} Access},
volume = {9},
pages = {24485--24498},
year = {2021},
url = {https://doi.org/10.1109/ACCESS.2021.3057196},
doi = {10.1109/ACCESS.2021.3057196},
timestamp = {Wed, 07 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/access/ChiccoJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/access/ChiccoSJ21,
author = {Davide Chicco and
Valery Starovoitov and
Giuseppe Jurman},
title = {The Benefits of the Matthews Correlation Coefficient {(MCC)} Over
the Diagnostic Odds Ratio {(DOR)} in Binary Classification Assessment},
journal = {{IEEE} Access},
volume = {9},
pages = {47112--47124},
year = {2021},
url = {https://doi.org/10.1109/ACCESS.2021.3068614},
doi = {10.1109/ACCESS.2021.3068614},
timestamp = {Thu, 29 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/access/ChiccoSJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/access/ChiccoWJ21,
author = {Davide Chicco and
Matthijs J. Warrens and
Giuseppe Jurman},
title = {The Matthews Correlation Coefficient {(MCC)} is More Informative Than
Cohen's Kappa and Brier Score in Binary Classification Assessment},
journal = {{IEEE} Access},
volume = {9},
pages = {78368--78381},
year = {2021},
url = {https://doi.org/10.1109/ACCESS.2021.3084050},
doi = {10.1109/ACCESS.2021.3084050},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/access/ChiccoWJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/access/ChiccoJ21a,
author = {Davide Chicco and
Giuseppe Jurman},
title = {Arterial Disease Computational Prediction and Health Record Feature
Ranking Among Patients Diagnosed With Inflammatory Bowel Disease},
journal = {{IEEE} Access},
volume = {9},
pages = {78648--78657},
year = {2021},
url = {https://doi.org/10.1109/ACCESS.2021.3084063},
doi = {10.1109/ACCESS.2021.3084063},
timestamp = {Tue, 15 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/access/ChiccoJ21a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/access/ChiccoLO21,
author = {Davide Chicco and
Christopher A. Lovejoy and
Luca Oneto},
title = {A Machine Learning Analysis of Health Records of Patients With Chronic
Kidney Disease at Risk of Cardiovascular Disease},
journal = {{IEEE} Access},
volume = {9},
pages = {165132--165144},
year = {2021},
url = {https://doi.org/10.1109/ACCESS.2021.3133700},
doi = {10.1109/ACCESS.2021.3133700},
timestamp = {Sat, 08 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/access/ChiccoLO21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChiccoO21,
author = {Davide Chicco and
Luca Oneto},
title = {Data analytics and clinical feature ranking of medical records of
patients with sepsis},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {12},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00235-0},
doi = {10.1186/S13040-021-00235-0},
timestamp = {Wed, 19 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChiccoO21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ChiccoTJ21,
author = {Davide Chicco and
Niklas T{\"{o}}tsch and
Giuseppe Jurman},
title = {The Matthews correlation coefficient {(MCC)} is more reliable than
balanced accuracy, bookmaker informedness, and markedness in two-class
confusion matrix evaluation},
journal = {BioData Min.},
volume = {14},
number = {1},
pages = {13},
year = {2021},
url = {https://doi.org/10.1186/s13040-021-00244-z},
doi = {10.1186/S13040-021-00244-Z},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/ChiccoTJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/hij/ChiccoO21,
author = {Davide Chicco and
Luca Oneto},
title = {Computational intelligence identifies alkaline phosphatase (ALP),
alpha-fetoprotein (AFP), and hemoglobin levels as most predictive
survival factors for hepatocellular carcinoma},
journal = {Health Informatics J.},
volume = {27},
number = {1},
pages = {146045822098420},
year = {2021},
url = {https://doi.org/10.1177/1460458220984205},
doi = {10.1177/1460458220984205},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/hij/ChiccoO21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerj-cs/ChiccoWJ21,
author = {Davide Chicco and
Matthijs J. Warrens and
Giuseppe Jurman},
title = {The coefficient of determination R-squared is more informative than
SMAPE, MAE, MAPE, {MSE} and {RMSE} in regression analysis evaluation},
journal = {PeerJ Comput. Sci.},
volume = {7},
pages = {e623},
year = {2021},
url = {https://doi.org/10.7717/peerj-cs.623},
doi = {10.7717/PEERJ-CS.623},
timestamp = {Wed, 16 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/peerj-cs/ChiccoWJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChiccoO21,
author = {Davide Chicco and
Luca Oneto},
title = {An Enhanced Random Forests Approach to Predict Heart Failure From
Small Imbalanced Gene Expression Data},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {6},
pages = {2759--2765},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2020.3041527},
doi = {10.1109/TCBB.2020.3041527},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChiccoO21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:books/sp/21/Chicco21,
author = {Davide Chicco},
editor = {Hugh M. Cartwright},
title = {Siamese Neural Networks: An Overview},
booktitle = {Artificial Neural Networks - Third Edition},
series = {Methods in Molecular Biology},
volume = {2190},
pages = {73--94},
publisher = {Springer},
year = {2021},
url = {https://doi.org/10.1007/978-1-0716-0826-5\_3},
doi = {10.1007/978-1-0716-0826-5\_3},
timestamp = {Fri, 25 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/books/sp/21/Chicco21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/ChiccoJ20,
author = {Davide Chicco and
Giuseppe Jurman},
title = {Machine learning can predict survival of patients with heart failure
from serum creatinine and ejection fraction alone},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {20},
number = {1},
pages = {16},
year = {2020},
url = {https://doi.org/10.1186/s12911-020-1023-5},
doi = {10.1186/S12911-020-1023-5},
timestamp = {Sun, 06 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/ChiccoJ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2006-11278,
author = {Chang Cao and
Davide Chicco and
Michael M. Hoffman},
title = {The {MCC-F1} curve: a performance evaluation technique for binary
classification},
journal = {CoRR},
volume = {abs/2006.11278},
year = {2020},
url = {https://arxiv.org/abs/2006.11278},
eprinttype = {arXiv},
eprint = {2006.11278},
timestamp = {Sat, 23 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2006-11278.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/bioinf/ChiccoM19,
author = {Davide Chicco and
Marco Masseroli},
editor = {Shoba Ranganathan and
Michael Gribskov and
Kenta Nakai and
Christian Sch{\"{o}}nbach},
title = {Biological and Medical Ontologies: Protein Ontology {(PRO)}},
booktitle = {Encyclopedia of Bioinformatics and Computational Biology - Volume
1},
pages = {832--837},
publisher = {Elsevier},
year = {2019},
url = {https://doi.org/10.1016/b978-0-12-809633-8.20396-8},
doi = {10.1016/B978-0-12-809633-8.20396-8},
timestamp = {Fri, 25 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/bioinf/ChiccoM19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/peerj-cs/FernandesCCF18,
author = {Kelwin Fernandes and
Davide Chicco and
Jaime S. Cardoso and
Jessica Fernandes},
title = {Supervised deep learning embeddings for the prediction of cervical
cancer diagnosis},
journal = {PeerJ Comput. Sci.},
volume = {4},
pages = {e154},
year = {2018},
url = {https://doi.org/10.7717/peerj-cs.154},
doi = {10.7717/PEERJ-CS.154},
timestamp = {Wed, 17 Mar 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/peerj-cs/FernandesCCF18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChiccoPM18,
author = {Davide Chicco and
Fernando Palluzzi and
Marco Masseroli},
title = {Novelty Indicator for Enhanced Prioritization of Predicted Gene Ontology
Annotations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {15},
number = {3},
pages = {954--965},
year = {2018},
url = {https://doi.org/10.1109/TCBB.2017.2695459},
doi = {10.1109/TCBB.2017.2695459},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChiccoPM18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/Chicco17,
author = {Davide Chicco},
title = {Ten quick tips for machine learning in computational biology},
journal = {BioData Min.},
volume = {10},
number = {1},
pages = {35:1--35:17},
year = {2017},
url = {https://doi.org/10.1186/s13040-017-0155-3},
doi = {10.1186/S13040-017-0155-3},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/Chicco17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChiccoM16,
author = {Davide Chicco and
Marco Masseroli},
title = {Ontology-Based Prediction and Prioritization of Gene Functional Annotations},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {13},
number = {2},
pages = {248--260},
year = {2016},
url = {https://doi.org/10.1109/TCBB.2015.2459694},
doi = {10.1109/TCBB.2015.2459694},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChiccoM16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/PinoliCM15,
author = {Pietro Pinoli and
Davide Chicco and
Marco Masseroli},
title = {Computational algorithms to predict Gene Ontology annotations},
journal = {{BMC} Bioinform.},
volume = {16},
number = {{S-6}},
pages = {S4},
year = {2015},
url = {https://doi.org/10.1186/1471-2105-16-S6-S4},
doi = {10.1186/1471-2105-16-S6-S4},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/PinoliCM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/ChiccoM15,
author = {Davide Chicco and
Marco Masseroli},
title = {Software Suite for Gene and Protein Annotation Prediction and Similarity
Search},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {12},
number = {4},
pages = {837--843},
year = {2015},
url = {https://doi.org/10.1109/TCBB.2014.2382127},
doi = {10.1109/TCBB.2014.2382127},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/ChiccoM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibb/ChiccoM15,
author = {Davide Chicco and
Marco Masseroli},
editor = {Claudia Angelini and
Paola M. V. Rancoita and
Stefano Rovetta},
title = {Validation Pipeline for Computational Prediction of Genomics Annotations},
booktitle = {Computational Intelligence Methods for Bioinformatics and Biostatistics
- 12th International Meeting, {CIBB} 2015, Naples, Italy, September
10-12, 2015, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {9874},
pages = {233--244},
publisher = {Springer},
year = {2015},
url = {https://doi.org/10.1007/978-3-319-44332-4\_18},
doi = {10.1007/978-3-319-44332-4\_18},
timestamp = {Sun, 02 Jun 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cibb/ChiccoM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@phdthesis{DBLP:phd/it/Chicco2014,
author = {Davide Chicco},
title = {Computational Prediction of Gene Functions through Machine Learning
methods and Multiple Validation Procedures},
school = {Polytechnic University of Milan, Italy},
year = {2014},
url = {https://hdl.handle.net/10589/88161},
timestamp = {Wed, 04 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/phd/it/Chicco2014.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/ChiccoSB14,
author = {Davide Chicco and
Peter J. Sadowski and
Pierre Baldi},
editor = {Pierre Baldi and
Wei Wang},
title = {Deep autoencoder neural networks for gene ontology annotation predictions},
booktitle = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
USA, September 20-23, 2014},
pages = {533--540},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2649387.2649442},
doi = {10.1145/2649387.2649442},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/ChiccoSB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibb/ChiccoCM14,
author = {Davide Chicco and
Eleonora Ciceri and
Marco Masseroli},
editor = {Clelia Di Serio and
Pietro Li{\`{o}} and
Alessandro Nonis and
Roberto Tagliaferri},
title = {Extended Spearman and Kendall Coefficients for Gene Annotation List
Correlation},
booktitle = {Computational Intelligence Methods for Bioinformatics and Biostatistics
- 11th International Meeting, {CIBB} 2014, Cambridge, UK, June 26-28,
2014, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {8623},
pages = {19--32},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-24462-4\_2},
doi = {10.1007/978-3-319-24462-4\_2},
timestamp = {Wed, 25 Sep 2019 18:13:08 +0200},
biburl = {https://dblp.org/rec/conf/cibb/ChiccoCM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibcb/PinoliCM14,
author = {Pietro Pinoli and
Davide Chicco and
Marco Masseroli},
title = {Latent Dirichlet Allocation based on Gibbs Sampling for gene function
prediction},
booktitle = {{IEEE} Conference on Computational Intelligence in Bioinformatics
and Computational Biology, {CIBCB} 2014, Honolulu, HI, USA, May 21-24,
2014},
pages = {1--8},
publisher = {{IEEE}},
year = {2014},
url = {https://doi.org/10.1109/CIBCB.2014.6845514},
doi = {10.1109/CIBCB.2014.6845514},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cibcb/PinoliCM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/ChiccoM13,
author = {Davide Chicco and
Marco Masseroli},
title = {A discrete optimization approach for {SVD} best truncation choice
based on {ROC} curves},
booktitle = {13th {IEEE} International Conference on BioInformatics and BioEngineering,
{BIBE} 2013, Chania, Greece, November 10-13, 2013},
pages = {1--4},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBE.2013.6701705},
doi = {10.1109/BIBE.2013.6701705},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/ChiccoM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/PinoliCM13,
author = {Pietro Pinoli and
Davide Chicco and
Marco Masseroli},
title = {Enhanced probabilistic latent semantic analysis with weighting schemes
to predict genomic annotations},
booktitle = {13th {IEEE} International Conference on BioInformatics and BioEngineering,
{BIBE} 2013, Chania, Greece, November 10-13, 2013},
pages = {1--4},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBE.2013.6701702},
doi = {10.1109/BIBE.2013.6701702},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/PinoliCM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibb/PinoliCM13,
author = {Pietro Pinoli and
Davide Chicco and
Marco Masseroli},
editor = {Enrico Formenti and
Roberto Tagliaferri and
Ernst Wit},
title = {Weighting Scheme Methods for Enhanced Genomic Annotation Prediction},
booktitle = {Computational Intelligence Methods for Bioinformatics and Biostatistics
- 10th International Meeting, {CIBB} 2013, Nice, France, June 20-22,
2013, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {8452},
pages = {76--89},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-319-09042-9\_6},
doi = {10.1007/978-3-319-09042-9\_6},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cibb/PinoliCM13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcnn/MasseroliCP12,
author = {Marco Masseroli and
Davide Chicco and
Pietro Pinoli},
title = {Probabilistic Latent Semantic Analysis for prediction of Gene Ontology
annotations},
booktitle = {The 2012 International Joint Conference on Neural Networks (IJCNN),
Brisbane, Australia, June 10-15, 2012},
pages = {1--8},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/IJCNN.2012.6252767},
doi = {10.1109/IJCNN.2012.6252767},
timestamp = {Sun, 25 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ijcnn/MasseroliCP12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cibb/ChiccoTM11,
author = {Davide Chicco and
Marco Tagliasacchi and
Marco Masseroli},
editor = {Elia Biganzoli and
Alfredo Vellido and
Federico Ambrogi and
Roberto Tagliaferri},
title = {Genomic Annotation Prediction Based on Integrated Information},
booktitle = {Computational Intelligence Methods for Bioinformatics and Biostatistics,
8th International Meeting, {CIBB} 2011, Gargnano del Garda, Italy,
June 30 - July 2, 2011, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {7548},
pages = {238--252},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-35686-5\_20},
doi = {10.1007/978-3-642-35686-5\_20},
timestamp = {Tue, 14 May 2019 10:00:54 +0200},
biburl = {https://dblp.org/rec/conf/cibb/ChiccoTM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isda/MasseroliTC11,
author = {Marco Masseroli and
Marco Tagliasacchi and
Davide Chicco},
editor = {Sebasti{\'{a}}n Ventura and
Ajith Abraham and
Krzysztof J. Cios and
Crist{\'{o}}bal Romero and
Francesco Marcelloni and
Jos{\'{e}} Manuel Ben{\'{\i}}tez and
Eva Lucrecia Gibaja Galindo},
title = {Semantically improved genome-wide prediction of Gene Ontology annotations},
booktitle = {11th International Conference on Intelligent Systems Design and Applications,
{ISDA} 2011, C{\'{o}}rdoba, Spain, November 22-24, 2011},
pages = {1080--1085},
publisher = {{IEEE}},
year = {2011},
url = {https://doi.org/10.1109/ISDA.2011.6121802},
doi = {10.1109/ISDA.2011.6121802},
timestamp = {Tue, 23 Aug 2022 09:19:48 +0200},
biburl = {https://dblp.org/rec/conf/isda/MasseroliTC11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wirn/ChiccoR10,
author = {Davide Chicco and
Marina Resta},
editor = {Bruno Apolloni and
Simone Bassis and
Anna Esposito and
Francesco Carlo Morabito},
title = {An intraday trading model based on Artificial Immune Systems},
booktitle = {Neural Nets {WIRN10} - Proceedings of the 20th Italian Workshop on
Neural Nets, Vietri sul Mare, Salerno, Italy, May 27-29 2010},
series = {Frontiers in Artificial Intelligence and Applications},
volume = {226},
pages = {62--68},
publisher = {{IOS} Press},
year = {2010},
url = {https://doi.org/10.3233/978-1-60750-692-8-62},
doi = {10.3233/978-1-60750-692-8-62},
timestamp = {Thu, 15 Jun 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/wirn/ChiccoR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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