BibTeX records: Duccio Cavalieri

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@proceedings{DBLP:conf/jowo/2022,
  editor       = {Tiago Prince Sales and
                  Maria M. Hedblom and
                  He Tan and
                  Guendalina Righetti and
                  Oliver Kutz and
                  Martin Glauer and
                  Janna Hastings and
                  Till Mossakowski and
                  Fabian Neuhaus and
                  Lucía {Gómez Álvarez} and
                  Rafael Pe{\~{n}}aloza and
                  Srdjan Vesic and
                  Claudenir Morais Fonseca and
                  Jona Thai and
                  Stefano Borgo and
                  Damion M. Dooley and
                  Rhiannon Cameron and
                  Lauren E. Chan and
                  Duccio Cavalieri and
                  Robert Warren and
                  Hande K{\"{u}}{\c{c}}{\"{u}}k{-}McGinty and
                  Matthew Lange and
                  Fernanda Forea and
                  Francesco Vitali and
                  Bart Gajderowicz and
                  Daniela Rosu and
                  Aldo Gangemi and
                  Robert Porzel and
                  Daniel Be{\ss}ler and
                  Mihai Pomarlan and
                  Mohammed Diab and
                  Alberto Olivares Alarcos},
  title        = {Proceedings of the Joint Ontology Workshops 2022 Episode {VIII:} The
                  Svear Sommar of Ontology, J{\"{o}}nk{\"{o}}ping, Sweden,
                  August 15-19, 2022},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {3249},
  publisher    = {CEUR-WS.org},
  year         = {2022},
  url          = {https://ceur-ws.org/Vol-3249},
  urn          = {urn:nbn:de:0074-3249-2},
  timestamp    = {Fri, 10 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/jowo/2022.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/jowo/DooleyABCCCCLMV21,
  author       = {Damion M. Dooley and
                  Liliana Andr{\'{e}}s{-}Hern{\'{a}}ndez and
                  Georgeta Bordea and
                  Leigh Carmody and
                  Duccio Cavalieri and
                  Lauren E. Chan and
                  Pol Castellano{-}Escuder and
                  Carl Lachat and
                  Fleur Mougin and
                  Francesco Vitali and
                  Chen Yang and
                  Magalie Weber and
                  Matthew Lange},
  editor       = {Emilio M. Sanfilippo and
                  Oliver Kutz and
                  Nicolas Troquard and
                  Torsten Hahmann and
                  Claudio Masolo and
                  Robert Hoehndorf and
                  Randi Vita and
                  Maria M. Hedblom and
                  Guendalina Righetti and
                  Dusan Sormaz and
                  Walter Terkaj and
                  Tiago Prince Sales and
                  Sergio de Cesare and
                  Frederik Gailly and
                  Giancarlo Guizzardi and
                  Mark Lycett and
                  Chris Partridge and
                  Oscar Pastor and
                  Daniel Be{\ss}ler and
                  Stefano Borgo and
                  Mohammed Diab and
                  Aldo Gangemi and
                  Alberto Olivares Alarcos and
                  Mihai Pomarlan and
                  Robert Porzel and
                  Ludger Jansen and
                  Mathias Brochhausen and
                  Daniele Porello and
                  Pawel Garbacz and
                  Selja Sepp{\"{a}}l{\"{a}} and
                  Michael Gr{\"{u}}ninger and
                  Amanda Vizedom and
                  Damion M. Dooley and
                  Robert Warren and
                  Hande K{\"{u}}{\c{c}}{\"{u}}k{-}McGinty and
                  Matthew Lange and
                  Alsayed Algergawy and
                  Naouel Karam and
                  Friederike Klan and
                  Franck Michel and
                  Ilaria Rosati},
  title        = {{OBO} Foundry Food Ontology Interconnectivity},
  booktitle    = {Proceedings of the Joint Ontology Workshops 2021 Episode {VII:} The
                  Bolzano Summer of Knowledge co-located with the 12th International
                  Conference on Formal Ontology in Information Systems {(FOIS} 2021),
                  and the 12th International Conference on Biomedical Ontologies {(ICBO}
                  2021), Bolzano, Italy, September 11-18, 2021},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {2969},
  publisher    = {CEUR-WS.org},
  year         = {2021},
  url          = {https://ceur-ws.org/Vol-2969/paper13-IFOW.pdf},
  timestamp    = {Tue, 21 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/jowo/DooleyABCCCCLMV21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/jowo/Reis-CostaVG0FC21,
  author       = {Ana Reis{-}Costa and
                  Francesco Vitali and
                  Agnese Gori and
                  Giovanni Bacci and
                  Carlotta De Filippo and
                  Duccio Cavalieri},
  editor       = {Emilio M. Sanfilippo and
                  Oliver Kutz and
                  Nicolas Troquard and
                  Torsten Hahmann and
                  Claudio Masolo and
                  Robert Hoehndorf and
                  Randi Vita and
                  Maria M. Hedblom and
                  Guendalina Righetti and
                  Dusan Sormaz and
                  Walter Terkaj and
                  Tiago Prince Sales and
                  Sergio de Cesare and
                  Frederik Gailly and
                  Giancarlo Guizzardi and
                  Mark Lycett and
                  Chris Partridge and
                  Oscar Pastor and
                  Daniel Be{\ss}ler and
                  Stefano Borgo and
                  Mohammed Diab and
                  Aldo Gangemi and
                  Alberto Olivares Alarcos and
                  Mihai Pomarlan and
                  Robert Porzel and
                  Ludger Jansen and
                  Mathias Brochhausen and
                  Daniele Porello and
                  Pawel Garbacz and
                  Selja Sepp{\"{a}}l{\"{a}} and
                  Michael Gr{\"{u}}ninger and
                  Amanda Vizedom and
                  Damion M. Dooley and
                  Robert Warren and
                  Hande K{\"{u}}{\c{c}}{\"{u}}k{-}McGinty and
                  Matthew Lange and
                  Alsayed Algergawy and
                  Naouel Karam and
                  Friederike Klan and
                  Franck Michel and
                  Ilaria Rosati},
  title        = {{ONS} Modeling of Diet Concepts: Further Development Required by the
                  Objective Definition of "Western Diet"},
  booktitle    = {Proceedings of the Joint Ontology Workshops 2021 Episode {VII:} The
                  Bolzano Summer of Knowledge co-located with the 12th International
                  Conference on Formal Ontology in Information Systems {(FOIS} 2021),
                  and the 12th International Conference on Biomedical Ontologies {(ICBO}
                  2021), Bolzano, Italy, September 11-18, 2021},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {2969},
  publisher    = {CEUR-WS.org},
  year         = {2021},
  url          = {https://ceur-ws.org/Vol-2969/paper7-IFOW.pdf},
  timestamp    = {Fri, 10 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/jowo/Reis-CostaVG0FC21.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BiancoRLFFCTF17,
  author       = {Luca Bianco and
                  Samantha Riccadonna and
                  Enrico Lavezzo and
                  Marco Falda and
                  Elide Formentin and
                  Duccio Cavalieri and
                  Stefano Toppo and
                  Paolo Fontana},
  title        = {Pathway Inspector: a pathway based web application for RNAseq analysis
                  of model and non-model organisms},
  journal      = {Bioinform.},
  volume       = {33},
  number       = {3},
  pages        = {453--455},
  year         = {2017},
  url          = {https://doi.org/10.1093/bioinformatics/btw636},
  doi          = {10.1093/BIOINFORMATICS/BTW636},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BiancoRLFFCTF17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/AlbaneseFCD15,
  author       = {Davide Albanese and
                  Carlotta De Filippo and
                  Duccio Cavalieri and
                  Claudio Donati},
  title        = {Explaining Diversity in Metagenomic Datasets by Phylogenetic-Based
                  Feature Weighting},
  journal      = {PLoS Comput. Biol.},
  volume       = {11},
  number       = {3},
  year         = {2015},
  url          = {https://doi.org/10.1371/journal.pcbi.1004186},
  doi          = {10.1371/JOURNAL.PCBI.1004186},
  timestamp    = {Thu, 10 Sep 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/ploscb/AlbaneseFCD15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeltrameBFC13,
  author       = {Luca Beltrame and
                  Luca Bianco and
                  Paolo Fontana and
                  Duccio Cavalieri},
  title        = {Pathway Processor 2.0: a web resource for pathway-based analysis of
                  high-throughput data},
  journal      = {Bioinform.},
  volume       = {29},
  number       = {14},
  pages        = {1825--1826},
  year         = {2013},
  url          = {https://doi.org/10.1093/bioinformatics/btt292},
  doi          = {10.1093/BIOINFORMATICS/BTT292},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BeltrameBFC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/FilippoRFC12,
  author       = {Carlotta De Filippo and
                  Matteo Ramazzotti and
                  Paolo Fontana and
                  Duccio Cavalieri},
  title        = {Bioinformatic approaches for functional annotation and pathway inference
                  in metagenomics data},
  journal      = {Briefings Bioinform.},
  volume       = {13},
  number       = {6},
  pages        = {696--710},
  year         = {2012},
  url          = {https://doi.org/10.1093/bib/bbs070},
  doi          = {10.1093/BIB/BBS070},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/FilippoRFC12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SalesCCR12,
  author       = {Gabriele Sales and
                  Enrica Calura and
                  Duccio Cavalieri and
                  Chiara Romualdi},
  title        = {graphite - a Bioconductor package to convert pathway topology to gene
                  network},
  journal      = {{BMC} Bioinform.},
  volume       = {13},
  pages        = {20},
  year         = {2012},
  url          = {https://doi.org/10.1186/1471-2105-13-20},
  doi          = {10.1186/1471-2105-13-20},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SalesCCR12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/SplendianiGACSB11,
  author       = {Andrea Splendiani and
                  Michaela G{\"{u}}ndel and
                  Jonathan M. Austyn and
                  Duccio Cavalieri and
                  Ciro Scognamiglio and
                  Marco Brandizi},
  title        = {Knowledge sharing and collaboration in translational research, and
                  the {DC-THERA} Directory},
  journal      = {Briefings Bioinform.},
  volume       = {12},
  number       = {6},
  pages        = {562--575},
  year         = {2011},
  url          = {https://doi.org/10.1093/bib/bbr051},
  doi          = {10.1093/BIB/BBR051},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/SplendianiGACSB11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BeltrameCPRGDRDC11,
  author       = {Luca Beltrame and
                  Enrica Calura and
                  Razvan R. Popovici and
                  Lisa Rizzetto and
                  Damariz Rivero Guedez and
                  Michele Donato and
                  Chiara Romualdi and
                  Sorin Draghici and
                  Duccio Cavalieri},
  title        = {The Biological Connection Markup Language: a SBGN-compliant format
                  for visualization, filtering and analysis of biological pathways},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {15},
  pages        = {2127--2133},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr339},
  doi          = {10.1093/BIOINFORMATICS/BTR339},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BeltrameCPRGDRDC11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/CavalieriCTMKGAD07,
  author       = {Duccio Cavalieri and
                  Cinzia Castagnini and
                  Simona Toti and
                  Karolina Maciag and
                  Thomas Kelder and
                  Luca Gambineri and
                  Samuele Angioli and
                  Piero Dolara},
  title        = {Eu.Gene Analyzer a tool for integrating gene expression data with
                  pathway databases},
  journal      = {Bioinform.},
  volume       = {23},
  number       = {19},
  pages        = {2631--2632},
  year         = {2007},
  url          = {https://doi.org/10.1093/bioinformatics/btm333},
  doi          = {10.1093/BIOINFORMATICS/BTM333},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/CavalieriCTMKGAD07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BallSPRBCCGHHRSSSTBQ02,
  author       = {Catherine A. Ball and
                  Gavin Sherlock and
                  Helen E. Parkinson and
                  Philippe Rocca{-}Serra and
                  Catherine Brooksbank and
                  Helen C. Causton and
                  Duccio Cavalieri and
                  Terry Gaasterland and
                  Pascal Hingamp and
                  Frank C. P. Holstege and
                  Martin Ringwald and
                  Paul T. Spellman and
                  Christian J. Stoeckert Jr. and
                  Jason E. Stewart and
                  Ronald C. Taylor and
                  Alvis Brazma and
                  John Quackenbush},
  title        = {An open letter to the scientific journals},
  journal      = {Bioinform.},
  volume       = {18},
  number       = {11},
  pages        = {1409},
  year         = {2002},
  url          = {https://doi.org/10.1093/bioinformatics/18.11.1409},
  doi          = {10.1093/BIOINFORMATICS/18.11.1409},
  timestamp    = {Tue, 28 Feb 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/BallSPRBCCGHHRSSSTBQ02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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