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ORCIDBibTeX records: Søren Buus
@article{DBLP:journals/bmcbi/KimSBSNP14,
author = {Yohan Kim and
John Sidney and
S{\o}ren Buus and
Alessandro Sette and
Morten Nielsen and
Bjoern Peters},
title = {Dataset size and composition impact the reliability of performance
benchmarks for peptide-MHC binding predictions},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {241},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-241},
doi = {10.1186/1471-2105-15-241},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/KimSBSNP14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LundegaardLHBLN08,
author = {Claus Lundegaard and
Kasper Lamberth and
Mikkel Harndahl and
S{\o}ren Buus and
Ole Lund and
Morten Nielsen},
title = {NetMHC-3.0: accurate web accessible predictions of human, mouse and
monkey {MHC} class {I} affinities for peptides of length 8-11},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Web-Server-Issue},
pages = {509--512},
year = {2008},
url = {https://doi.org/10.1093/nar/gkn202},
doi = {10.1093/NAR/GKN202},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/LundegaardLHBLN08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangWKHBBBBFGLLNPSZP08,
author = {Qing Zhang and
Peng Wang and
Yohan Kim and
Pernille Haste{-}Andersen and
John E. Beaver and
Philip E. Bourne and
Huynh{-}Hoa Bui and
S{\o}ren Buus and
Sune Frankild and
Jason Greenbaum and
Ole Lund and
Claus Lundegaard and
Morten Nielsen and
Julia V. Ponomarenko and
Alessandro Sette and
Zhanyang Zhu and
Bj{\"{o}}rn Peters},
title = {Immune epitope database analysis resource {(IEDB-AR)}},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Web-Server-Issue},
pages = {513--518},
year = {2008},
url = {https://doi.org/10.1093/nar/gkn254},
doi = {10.1093/NAR/GKN254},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ZhangWKHBBBBFGLLNPSZP08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/NielsenLBPSJBL08,
author = {Morten Nielsen and
Claus Lundegaard and
Thomas Blicher and
Bjoern Peters and
Alessandro Sette and
Sune Justesen and
S{\o}ren Buus and
Ole Lund},
title = {Quantitative Predictions of Peptide Binding to Any {HLA-DR} Molecule
of Known Sequence: NetMHCIIpan},
journal = {PLoS Comput. Biol.},
volume = {4},
number = {7},
year = {2008},
url = {https://doi.org/10.1371/journal.pcbi.1000107},
doi = {10.1371/JOURNAL.PCBI.1000107},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/NielsenLBPSJBL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LarsenLLBLN07,
author = {Mette V. Larsen and
Claus Lundegaard and
Kasper Lamberth and
S{\o}ren Buus and
Ole Lund and
Morten Nielsen},
title = {Large-scale validation of methods for cytotoxic T-lymphocyte epitope
prediction},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-424},
doi = {10.1186/1471-2105-8-424},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LarsenLLBLN07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/PetersBFNLKBLHFWSLBS06,
author = {Bjoern Peters and
Huynh{-}Hoa Bui and
Sune Frankild and
Morten Nielsen and
Claus Lundegaard and
Emrah Kostem and
Derek Basch and
Kasper Lamberth and
Mikkel Harndahl and
Ward Fleri and
Stephen S. Wilson and
John Sidney and
Ole Lund and
S{\o}ren Buus and
Alessandro Sette},
title = {A Community Resource Benchmarking Predictions of Peptide Binding to
{MHC-I} Molecules},
journal = {PLoS Comput. Biol.},
volume = {2},
number = {6},
year = {2006},
url = {https://doi.org/10.1371/journal.pcbi.0020065},
doi = {10.1371/JOURNAL.PCBI.0020065},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/PetersBFNLKBLHFWSLBS06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/prib/SetteBSBBFKLNPSSWWP06,
author = {Alessandro Sette and
Huynh{-}Hoa Bui and
John Sidney and
Philip E. Bourne and
S{\o}ren Buus and
Ward Fleri and
R. Kubo and
Ole Lund and
D. Nemazee and
Julia V. Ponomarenko and
Muthu Sathiamurthy and
Scott Stewart and
Scott Way and
Stephen S. Wilson and
Bj{\"{o}}rn Peters},
editor = {Jagath C. Rajapakse and
Limsoon Wong and
Raj Acharya},
title = {The Immune Epitope Database and Analysis Resource},
booktitle = {Pattern Recognition in Bioinformatics, International Workshop, {PRIB}
2006, Hong Kong, China, August 20, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4146},
pages = {126--132},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11818564\_14},
doi = {10.1007/11818564\_14},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/prib/SetteBSBBFKLNPSSWWP06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/NielsenLWSLBBL04,
author = {Morten Nielsen and
Claus Lundegaard and
Peder Worning and
Christina Sylvester{-}Hvid and
Kasper Lamberth and
S{\o}ren Buus and
S{\o}ren Brunak and
Ole Lund},
title = {Improved prediction of {MHC} class {I} and class {II} epitopes using
a novel Gibbs sampling approach},
journal = {Bioinform.},
volume = {20},
number = {9},
pages = {1388--1397},
year = {2004},
url = {https://doi.org/10.1093/bioinformatics/bth100},
doi = {10.1093/BIOINFORMATICS/BTH100},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/NielsenLWSLBBL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icaris/LundegaardNLWSBBL04,
author = {Claus Lundegaard and
Morten Nielsen and
Kasper Lamberth and
Peder Worning and
Christina Sylvester{-}Hvid and
S{\o}ren Buus and
S{\o}ren Brunak and
Ole Lund},
editor = {Giuseppe Nicosia and
Vincenzo Cutello and
Peter J. Bentley and
Jon Timmis},
title = {{MHC} Class {I} Epitope Binding Prediction Trained on Small Data Sets},
booktitle = {Artificial Immune Systems, Third International Conference, {ICARIS}
2004, Catania, Sicily, Italy, September 13-16, 2004},
series = {Lecture Notes in Computer Science},
volume = {3239},
pages = {217--225},
publisher = {Springer},
year = {2004},
url = {https://doi.org/10.1007/978-3-540-30220-9\_18},
doi = {10.1007/978-3-540-30220-9\_18},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/icaris/LundegaardNLWSBBL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neco/ChristensenLNLWLBBL03,
author = {Jens Kaae Christensen and
Kasper Lamberth and
Morten Nielsen and
Claus Lundegaard and
Peder Worning and
Sanne Lise Lauem{\o}ller and
S{\o}ren Buus and
S{\o}ren Brunak and
Ole Lund},
title = {Selecting Informative Data for Developing Peptide-MHC Binding Predictors
Using a Query by Committee Approach},
journal = {Neural Comput.},
volume = {15},
number = {12},
pages = {2931--2942},
year = {2003},
url = {https://doi.org/10.1162/089976603322518803},
doi = {10.1162/089976603322518803},
timestamp = {Tue, 01 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neco/ChristensenLNLWLBBL03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/RognanSFLEAB00,
author = {Didier Rognan and
Anette Stryhn and
Lars Fugger and
Stig Lyngb{\ae}k and
Jan Engberg and
Peter Sejer Andersen and
S{\o}ren Buus},
title = {Modeling the interactions of a peptide-major histocompatibility class
{I} ligand with its receptors. I. Recognition by two alpha-beta {T}
cell receptors},
journal = {J. Comput. Aided Mol. Des.},
volume = {14},
number = {1},
pages = {53--69},
year = {2000},
url = {https://doi.org/10.1023/A:1008142830353},
doi = {10.1023/A:1008142830353},
timestamp = {Thu, 16 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcamd/RognanSFLEAB00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcamd/RognanESAB00,
author = {Didier Rognan and
Jan Engberg and
Anette Stryhn and
Peter Sejer Andersen and
S{\o}ren Buus},
title = {Modeling the interactions of a peptide-major histocompatibility class
{I} ligand with its receptors. {II.} Cross-reaction between a monoclonal
antibody and two alpha-beta {T} cell receptors},
journal = {J. Comput. Aided Mol. Des.},
volume = {14},
number = {1},
pages = {71--82},
year = {2000},
url = {https://doi.org/10.1023/A:1008116522274},
doi = {10.1023/A:1008116522274},
timestamp = {Thu, 16 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcamd/RognanESAB00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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