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ORCIDBibTeX records: Judith A. Blake
@article{DBLP:journals/bioinformatics/GoodAHMCBATMBD21,
author = {Benjamin M. Good and
Kimberly Van Auken and
David P. Hill and
Huaiyu Mi and
Seth Carbon and
James P. Balhoff and
Laurent{-}Philippe Albou and
Paul D. Thomas and
Christopher J. Mungall and
Judith A. Blake and
Peter D'Eustachio},
title = {Reactome and the Gene Ontology: digital convergence of data resources},
journal = {Bioinform.},
volume = {37},
number = {19},
pages = {3343--3348},
year = {2021},
url = {https://doi.org/10.1093/bioinformatics/btab325},
doi = {10.1093/BIOINFORMATICS/BTAB325},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/GoodAHMCBATMBD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/CarbonDGUHMBCDH21,
author = {Seth Carbon and
Eric Douglass and
Benjamin M. Good and
Deepak R. Unni and
Nomi L. Harris and
Christopher J. Mungall and
Siddartha Basu and
Rex L. Chisholm and
Robert J. Dodson and
Eric Hartline and
Petra Fey and
Paul D. Thomas and
Laurent{-}Philippe Albou and
Dustin Ebert and
Michael J. Kesling and
Huaiyu Mi and
Anushya Muruganujan and
Xiaosong Huang and
Tremayne Mushayahama and
Sandra A. LaBonte and
Deborah A. Siegele and
Giulia Antonazzo and
Helen Attrill and
Nick H. Brown and
Phani V. Garapati and
Steven J. Marygold and
Vitor Trovisco and
Gilberto dos Santos and
Kathleen Falls and
Christopher J. Tabone and
Pinglei Zhou and
Joshua L. Goodman and
Victor B. Strelets and
Jim Thurmond and
Penelope Garmiri and
Rizwan Ishtiaq and
Milagros Rodr{\'{\i}}guez{-}L{\'{o}}pez and
Marcio Luis Acencio and
Martin Kuiper and
Astrid L{\ae}greid and
Colin Logie and
Ruth C. Lovering and
Barbara Kramarz and
Shirin C. C. Saverimuttu and
Sandra M. Pinheiro and
Heather Gunn and
Renzhi Su and
Katherine E. Thurlow and
Marcus C. Chibucos and
Michelle G. Giglio and
Suvarna Nadendla and
James B. Munro and
Rebecca C. Jackson and
Margaret J. Duesbury and
Noemi del{-}Toro and
Birgit H. M. Meldal and
Kalpana Paneerselvam and
Livia Perfetto and
Pablo Porras and
Sandra E. Orchard and
Anjali Shrivastava and
Hsin{-}Yu Chang and
Robert D. Finn and
Alex L. Mitchell and
Neil D. Rawlings and
Lorna J. Richardson and
Amaia Sangrador{-}Vegas and
Judith A. Blake and
Karen R. Christie and
Mary E. Dolan and
Harold J. Drabkin and
David P. Hill and
Li Ni and
Dmitry M. Sitnikov and
Midori A. Harris and
Stephen G. Oliver and
Kim Rutherford and
Valerie Wood and
Jaqueline Hayles and
J{\"{u}}rg B{\"{a}}hler and
Elizabeth R. Bolton and
Jeffrey DePons and
Melinda R. Dwinell and
G. Thomas Hayman and
Mary L. Kaldunski and
Anne E. Kwitek and
Stanley J. F. Laulederkind and
Cody Plasterer and
Marek Tutaj and
Mahima Vedi and
Shur{-}Jen Wang and
Peter D'Eustachio and
Lisa Matthews and
James P. Balhoff and
Suzi A. Aleksander and
Michael J. Alexander and
J. Michael Cherry and
Stacia R. Engel and
Felix Gondwe and
Kalpana Karra and
Stuart R. Miyasato and
Robert S. Nash and
Matt Simison and
Marek S. Skrzypek and
Shuai Weng and
Edith D. Wong and
Marc Feuermann and
Pascale Gaudet and
Anne Morgat and
Erica Bakker and
Tanya Z. Berardini and
Leonore Reiser and
Shabari Subramaniam and
Eva Huala and
Cecilia N. Arighi and
Andrea H. Auchincloss and
Kristian B. Axelsen and
Ghislaine Argoud{-}Puy and
Alex Bateman and
Marie{-}Claude Blatter and
Emmanuel Boutet and
Emily Bowler and
Lionel Breuza and
Alan J. Bridge and
Ramona Britto and
Hema Bye{-}A{-}Jee and
Cristina Casals{-}Casas and
Elisabeth Coudert and
Paul Denny and
Anne Estreicher and
Maria Livia Famiglietti and
George E. Georghiou and
Arnaud Gos and
Nadine Gruaz{-}Gumowski and
Emma Hatton{-}Ellis and
Chantal Hulo and
Alexandr Ignatchenko and
Florence Jungo and
Kati Laiho and
Philippe Le Mercier and
Damien Lieberherr and
Antonia Lock and
Yvonne Lussi and
Alistair MacDougall and
Michele Magrane and
Maria Jesus Martin and
Patrick Masson and
Darren A. Natale and
Nevila Hyka{-}Nouspikel and
Ivo Pedruzzi and
Lucille Pourcel and
Sylvain Poux and
Sangya Pundir and
Catherine Rivoire and
Elena Speretta and
Shyamala Sundaram and
Nidhi Tyagi and
Kate Warner and
Rossana Zaru and
Cathy H. Wu and
Alexander D. Diehl and
Juancarlos Chan and
Christian A. Grove and
Raymond Y. N. Lee and
Hans{-}Michael M{\"{u}}ller and
Daniela Raciti and
Kimberly Van Auken and
Paul W. Sternberg and
Matthew Berriman and
Michael Paulini and
Kevin L. Howe and
Sibyl Gao and
Adam Wright and
Lincoln Stein and
Douglas G. Howe and
Sabrina Toro and
Monte Westerfield and
Pankaj Jaiswal and
Laurel Cooper and
Justin Elser},
title = {The Gene Ontology resource: enriching a GOld mine},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D325--D334},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1113},
doi = {10.1093/NAR/GKAA1113},
timestamp = {Fri, 15 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/CarbonDGUHMBCDH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlakeBKRSBABBBB21,
author = {Judith A. Blake and
Richard M. Baldarelli and
James A. Kadin and
Joel E. Richardson and
Cynthia L. Smith and
Carol J. Bult and
Anna V. Anagnostopoulos and
Jon S. Beal and
Susan M. Bello and
Olin Blodgett and
Nancy E. Butler and
Jeff Campbell and
Karen R. Christie and
Lori E. Corbani and
Mary E. Dolan and
Harold J. Drabkin and
Mar{\'{\i}}a Flores and
Susan L. Giannatto and
Angelina Guerra and
Paul Hale and
David P. Hill and
Jonathan Judd and
Meiyee Law and
Monica McAndrews and
Dave Miers and
Cailey Mitchell and
Howie Motenko and
Li Ni and
Hiroaki Onda and
Janice Ormsby and
Michelle Perry and
Jill M. Recla and
David R. Shaw and
Dmitry Sitnikov and
Monika Tomczuk and
Laurens G. Wilming and
Yunxia Sophia Zhu},
title = {Mouse Genome Database {(MGD):} Knowledgebase for mouse-human comparative
biology},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D981--D987},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1083},
doi = {10.1093/NAR/GKAA1083},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlakeBKRSBABBBB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JiangLKBRS20,
author = {Xiangying Jiang and
Pengyuan Li and
James A. Kadin and
Judith A. Blake and
Martin Ringwald and
Hagit Shatkay},
title = {Integrating image caption information into biomedical document classification
in support of biocuration},
journal = {Database J. Biol. Databases Curation},
volume = {2020},
year = {2020},
url = {https://doi.org/10.1093/database/baaa024},
doi = {10.1093/DATABASE/BAAA024},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/JiangLKBRS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JiangRBS20,
author = {Xiangying Jiang and
Martin Ringwald and
Judith A. Blake and
Hagit Shatkay},
title = {Effective biomedical document classification for identifying publications
relevant to the mouse Gene Expression Database {(GXD)}},
journal = {Database J. Biol. Databases Curation},
volume = {2020},
year = {2020},
url = {https://doi.org/10.1093/database/baaa043},
doi = {10.1093/DATABASE/BAAA043},
timestamp = {Sun, 11 Oct 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/JiangRBS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AgapiteAAAAABBB20,
author = {Julie Agapite and
Laurent{-}Philippe Albou and
Suzi A. Aleksander and
Joanna Argasinska and
Valerio Arnaboldi and
Helen Attrill and
Susan M. Bello and
Judith A. Blake and
Olin Blodgett and
Yvonne M. Bradford and
Carol J. Bult and
Scott Cain and
Brian R. Calvi and
Seth Carbon and
Juancarlos Chan and
Wen J. Chen and
J. Michael Cherry and
Jae{-}Hyoung Cho and
Karen R. Christie and
Madeline A. Crosby and
Jeff de Pons and
Mary E. Dolan and
Gilberto dos Santos and
Barbara Dunn and
Nathan A. Dunn and
Anne E. Eagle and
Dustin Ebert and
Stacia R. Engel and
David Fashena and
Ken Frazer and
Sibyl Gao and
Felix Gondwe and
Joshua L. Goodman and
L. Sian Gramates and
Christian A. Grove and
Todd W. Harris and
Marie{-}Claire Harrison and
Douglas G. Howe and
Kevin L. Howe and
Sagar Jha and
James A. Kadin and
Thomas C. Kaufman and
Patrick Kalita and
Kalpana Karra and
Ranjana Kishore and
Stanley J. F. Laulederkind and
Raymond Y. N. Lee and
Kevin A. MacPherson and
Steven J. Marygold and
Beverley Matthews and
Gillian H. Millburn and
Stuart R. Miyasato and
Sierra A. T. Moxon and
Hans{-}Michael M{\"{u}}ller and
Christopher J. Mungall and
Anushya Muruganujan and
Tremayne Mushayahama and
Robert S. Nash and
Patrick Ng and
Michael Paulini and
Norbert Perrimon and
Christian Pich and
Daniela Raciti and
Joel E. Richardson and
Matthew Russell and
Susan Russo Gelbart and
Leyla Ruzicka and
Kevin Schaper and
Mary Shimoyama and
Matt Simison and
Cynthia L. Smith and
David R. Shaw and
Ajay Shrivatsav and
Marek S. Skrzypek and
Jennifer R. Smith and
Paul W. Sternberg and
Christopher J. Tabone and
Paul D. Thomas and
Jyothi Thota and
Sabrina Toro and
Monika Tomczuk and
Marek Tutaj and
Monika Tutaj and
Jose{-}Maria Urbano and
Kimberly Van Auken and
Ceri E. Van Slyke and
Shur{-}Jen Wang and
Shuai Weng and
Monte Westerfield and
Gary Williams and
Edith D. Wong and
Adam Wright and
Karen Yook},
title = {Alliance of Genome Resources Portal: unified model organism research
platform},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D650--D658},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz813},
doi = {10.1093/NAR/GKZ813},
timestamp = {Mon, 03 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/AgapiteAAAAABBB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/BubierHMRBBEBC19,
author = {Jason A. Bubier and
David P. Hill and
Gaurab Mukherjee and
Timothy Reynolds and
Erich J. Baker and
Alexander Berger and
Jake Emerson and
Judith A. Blake and
Elissa J. Chesler},
title = {Curating gene sets: challenges and opportunities for integrative analysis},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {baz036},
year = {2019},
url = {https://doi.org/10.1093/database/baz036},
doi = {10.1093/DATABASE/BAZ036},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/BubierHMRBBEBC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JiangRBAZS19,
author = {Xiangying Jiang and
Martin Ringwald and
Judith A. Blake and
Cecilia N. Arighi and
Gongbo Zhang and
Hagit Shatkay},
title = {An effective biomedical document classification scheme in support
of biocuration: addressing class imbalance},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {baz045},
year = {2019},
url = {https://doi.org/10.1093/database/baz045},
doi = {10.1093/DATABASE/BAZ045},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/JiangRBAZS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BultBSKRG19,
author = {Carol J. Bult and
Judith A. Blake and
Cynthia L. Smith and
James A. Kadin and
Joel E. Richardson and
The Mouse Genome Database Group},
title = {Mouse Genome Database {(MGD)} 2019},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D801--D806},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1056},
doi = {10.1093/NAR/GKY1056},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BultBSKRG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ForslundPCSAHMP18,
author = {Kristoffer Forslund and
C{\'{e}}cile Pereira and
Salvador Capella{-}Guti{\'{e}}rrez and
Alan W. Sousa da Silva and
Adrian M. Altenhoff and
Jaime Huerta{-}Cepas and
Matthieu Muffato and
Mateus Patricio and
Klaas Vandepoele and
Ingo Ebersberger and
Judith A. Blake and
Jesualdo Tom{\'{a}}s Fern{\'{a}}ndez{-}Breis and
The Quest for Orthologs Consortium and
Brigitte Boeckmann and
Toni Gabald{\'{o}}n and
Erik L. L. Sonnhammer and
Christophe Dessimoz and
Suzanna Lewis},
title = {Gearing up to handle the mosaic nature of life in the quest for orthologs},
journal = {Bioinform.},
volume = {34},
number = {2},
pages = {323--329},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/btx542},
doi = {10.1093/BIOINFORMATICS/BTX542},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ForslundPCSAHMP18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SmithBKRBG18,
author = {Cynthia L. Smith and
Judith A. Blake and
James A. Kadin and
Joel E. Richardson and
Carol J. Bult and
The Mouse Genome Database Group},
title = {Mouse Genome Database {(MGD)-2018:} knowledgebase for the laboratory
mouse},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D836--D842},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx1006},
doi = {10.1093/NAR/GKX1006},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/SmithBKRBG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/JiangRBS17,
author = {Xiangying Jiang and
Martin Ringwald and
Judith A. Blake and
Hagit Shatkay},
title = {Effective biomedical document classification for identifying publications
relevant to the mouse Gene Expression Database {(GXD)}},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax017},
year = {2017},
url = {https://doi.org/10.1093/database/bax017},
doi = {10.1093/DATABASE/BAX017},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/JiangRBS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NataleABBCCCCDD17,
author = {Darren A. Natale and
Cecilia N. Arighi and
Judith A. Blake and
Jonathan P. Bona and
Chuming Chen and
Sheng{-}Chih Chen and
Karen R. Christie and
Julie Cowart and
Peter D'Eustachio and
Alexander D. Diehl and
Harold J. Drabkin and
William D. Duncan and
Hongzhan Huang and
Jia Ren and
Karen Ross and
Alan Ruttenberg and
Veronica Shamovsky and
Barry Smith and
Qinghua Wang and
Jian Zhang and
Abdelrahman Elsayed and
Cathy H. Wu},
title = {Protein Ontology {(PRO):} enhancing and scaling up the representation
of protein entities},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D339--D346},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1075},
doi = {10.1093/NAR/GKW1075},
timestamp = {Wed, 10 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/NataleABBCCCCDD17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlakeEKRSBG17,
author = {Judith A. Blake and
Janan T. Eppig and
James A. Kadin and
Joel E. Richardson and
Cynthia L. Smith and
Carol J. Bult and
The Mouse Genome Database Group},
title = {Mouse Genome Database {(MGD)-2017:} community knowledge resource for
the laboratory mouse},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D723--D729},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1040},
doi = {10.1093/NAR/GKW1040},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlakeEKRSBG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/HillDBMRB16,
author = {David P. Hill and
Peter D'Eustachio and
Tanya Z. Berardini and
Christopher J. Mungall and
Nikolai Renedo and
Judith A. Blake},
title = {Modeling biochemical pathways in the gene ontology},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw126},
doi = {10.1093/DATABASE/BAW126},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/HillDBMRB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/TripathiVCCBHOH16,
author = {Sushil Tripathi and
Steven Vercruysse and
Konika Chawla and
Karen R. Christie and
Judith A. Blake and
Rachael P. Huntley and
Sandra E. Orchard and
Henning Hermjakob and
Liv Thommesen and
Astrid L{\ae}greid and
Martin Kuiper},
title = {Gene regulation knowledge commons: community action takes care of
{DNA} binding transcription factors},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw088},
doi = {10.1093/DATABASE/BAW088},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/TripathiVCCBHOH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HuangESBDHNRHZJ16,
author = {Jingshan Huang and
Karen Eilbeck and
Barry Smith and
Judith A. Blake and
Dejing Dou and
Weili Huang and
Darren A. Natale and
Alan Ruttenberg and
Jun Huan and
Michael T. Zimmermann and
Guoqian Jiang and
Yu Lin and
Bin Wu and
Harrison J. Strachan and
Yongqun He and
Shaojie Zhang and
Xiaowei Wang and
Zixing Liu and
Glen M. Borchert and
Ming Tan},
title = {The Non-Coding {RNA} Ontology {(NCRO):} a comprehensive resource for
the unification of non-coding {RNA} biology},
journal = {J. Biomed. Semant.},
volume = {7},
pages = {24},
year = {2016},
url = {https://doi.org/10.1186/s13326-016-0066-0},
doi = {10.1186/S13326-016-0066-0},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/HuangESBDHNRHZJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HuangGSDHSBENLW16,
author = {Jingshan Huang and
Fernando Gutierrez and
Harrison J. Strachan and
Dejing Dou and
Weili Huang and
Barry Smith and
Judith A. Blake and
Karen Eilbeck and
Darren A. Natale and
Yu Lin and
Bin Wu and
Nisansa de Silva and
Xiaowei Wang and
Zixing Liu and
Glen M. Borchert and
Ming Tan and
Alan Ruttenberg},
title = {OmniSearch: a semantic search system based on the Ontology for MIcroRNA
Target {(OMIT)} for microRNA-target gene interaction data},
journal = {J. Biomed. Semant.},
volume = {7},
pages = {25},
year = {2016},
url = {https://doi.org/10.1186/s13326-016-0064-2},
doi = {10.1186/S13326-016-0064-2},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/HuangGSDHSBENLW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/DiehlMBBDDHORSS16,
author = {Alexander D. Diehl and
Terrence F. Meehan and
Yvonne M. Bradford and
Matthew H. Brush and
Wasila M. Dahdul and
David S. Dougall and
Yongqun He and
David Osumi{-}Sutherland and
Alan Ruttenberg and
Sirarat Sarntivijai and
Ceri E. Van Slyke and
Nicole A. Vasilevsky and
Melissa A. Haendel and
Judith A. Blake and
Christopher J. Mungall},
title = {The Cell Ontology 2016: enhanced content, modularization, and ontology
interoperability},
journal = {J. Biomed. Semant.},
volume = {7},
pages = {44},
year = {2016},
url = {https://doi.org/10.1186/s13326-016-0088-7},
doi = {10.1186/S13326-016-0088-7},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biomedsem/DiehlMBBDDHORSS16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijdmb/HuangESBDHNRHZJ16,
author = {Jingshan Huang and
Karen Eilbeck and
Barry Smith and
Judith A. Blake and
Dejing Dou and
Weili Huang and
Darren A. Natale and
Alan Ruttenberg and
Jun Huan and
Michael T. Zimmermann and
Guoqian Jiang and
Yu Lin and
Bin Wu and
Harrison J. Strachan and
Nisansa de Silva and
Mohan Vamsi Kasukurthi and
Vikash Kumar Jha and
Yongqun He and
Shaojie Zhang and
Xiaowei Wang and
Zixing Liu and
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Ming Tan},
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Judith A. Blake and
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Judith A. Blake and
Carol J. Bult and
James A. Kadin and
Joel E. Richardson},
title = {The Mouse Genome Database {(MGD):} facilitating mouse as a model for
human biology and disease},
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timestamp = {Sun, 17 May 2020 01:00:00 +0200},
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author = {Jingshan Huang and
Karen Eilbeck and
Judith A. Blake and
Dejing Dou and
Darren A. Natale and
Alan Ruttenberg and
Barry Smith and
Michael T. Zimmermann and
Guoqian Jiang and
Yu Lin and
Bin Wu and
Yongqun He and
Shaojie Zhang and
Xiaowei Wang and
He Zhang and
Zixing Liu and
Ming Tan},
editor = {Jun Huan and
Satoru Miyano and
Amarda Shehu and
Xiaohua Tony Hu and
Bin Ma and
Sanguthevar Rajasekaran and
Vijay K. Gombar and
Matthieu{-}P. Schapranow and
Illhoi Yoo and
Jiayu Zhou and
Brian Chen and
Vinay Pai and
Brian G. Pierce},
title = {A domain ontology for the Non-Coding {RNA} field},
booktitle = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
pages = {621--624},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/BIBM.2015.7359755},
doi = {10.1109/BIBM.2015.7359755},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/HuangEBDNRSZJLW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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Fernando Gutierrez and
Dejing Dou and
Judith A. Blake and
Karen Eilbeck and
Darren A. Natale and
Barry Smith and
Yu Lin and
Xiaowei Wang and
Zixing Liu and
Ming Tan and
Alan Ruttenberg},
editor = {Jun Huan and
Satoru Miyano and
Amarda Shehu and
Xiaohua Tony Hu and
Bin Ma and
Sanguthevar Rajasekaran and
Vijay K. Gombar and
Matthieu{-}P. Schapranow and
Illhoi Yoo and
Jiayu Zhou and
Brian Chen and
Vinay Pai and
Brian G. Pierce},
title = {A semantic approach for knowledge capture of MIcroRNA-Target gene
interactions},
booktitle = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
pages = {975--982},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/BIBM.2015.7359816},
doi = {10.1109/BIBM.2015.7359816},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
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bibsource = {dblp computer science bibliography, https://dblp.org}
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Owen White and
Judith A. Blake and
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Frederic B. Bastian and
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Thomas Dececchi and
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Paula M. Mabee and
Anne Niknejad and
Marc Robinson{-}Rechavi and
Paul C. Sereno and
Christopher J. Mungall},
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timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
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Harold J. Drabkin and
Huy Ngu and
Michael Sackman and
Craig Fournier and
Jessica Haggett and
Judith A. Blake and
Diana W. Bianchi and
Donna K. Slonim},
title = {{DFLAT:} functional annotation for human development},
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year = {2014},
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author = {Rachael P. Huntley and
Midori A. Harris and
Yasmin Alam{-}Faruque and
Judith A. Blake and
Seth Carbon and
Heiko Dietze and
Emily C. Dimmer and
Rebecca E. Foulger and
David P. Hill and
Varsha K. Khodiyar and
Antonia Lock and
Jane Lomax and
Ruth C. Lovering and
Prudence Mutowo{-}Meullenet and
Tony Sawford and
Kimberly Van Auken and
Valerie Wood and
Christopher J. Mungall},
title = {A method for increasing expressivity of Gene Ontology annotations
using a compositional approach},
journal = {{BMC} Bioinform.},
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pages = {155},
year = {2014},
url = {https://doi.org/10.1186/1471-2105-15-155},
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timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
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author = {Joao A. Ascensao and
Mary E. Dolan and
David P. Hill and
Judith A. Blake},
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year = {2014},
url = {https://doi.org/10.1186/s12859-014-0405-z},
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Cecilia N. Arighi and
Judith A. Blake and
Carol J. Bult and
Karen R. Christie and
Julie Cowart and
Peter D'Eustachio and
Alexander D. Diehl and
Harold J. Drabkin and
Olivia Helfer and
Hongzhan Huang and
Anna Maria Masci and
Jia Ren and
Natalia V. Roberts and
Karen Ross and
Alan Ruttenberg and
Veronica Shamovsky and
Barry Smith and
Meher Shruti Yerramalla and
Jian Zhang and
Aisha AlJanahi and
Irem {\c{C}}elen and
Cynthia Gan and
Mengxi Lv and
Emily Schuster{-}Lezell and
Cathy H. Wu},
title = {Protein Ontology: a controlled structured network of protein entities},
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number = {Database-Issue},
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year = {2014},
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Carol J. Bult and
Janan T. Eppig and
James A. Kadin and
Joel E. Richardson},
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RIKEN PMII and
RIKEN CLST (DGT) and
Alistair R. R. Forrest and
Hideya Kawaji and
Michael Rehli and
J. Kenneth Baillie and
Michiel J. L. de Hoon and
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Timo Lassmann and
Ivan V. Kulakovskiy and
Marina Lizio and
Masayoshi Itoh and
Robin Andersson and
Christopher J. Mungall and
Terrence F. Meehan and
Sebastian Schmeier and
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Mette J{\o}rgensen and
Emmanuel Dimont and
Erik Arner and
Christian Schmidl and
Ulf Schaefer and
Yulia A. Medvedeva and
Charles Plessy and
Morana Vitezic and
Jessica Severin and
Colin A. M. Semple and
Yuri Ishizu and
Robert S. Young and
Margherita Francescatto and
Intikhab Alam and
Davide Albanese and
Gabriel M. Altschuler and
Takahiro Arakawa and
John A. C. Archer and
Peter Arner and
Magda Babina and
Sarah Rennie and
Piotr J. Balwierz and
Anthony G. Beckhouse and
Swati Pradhan{-}Bhatt and
Judith A. Blake and
Antje Blumenthal and
Beatrice Bodega and
Alessandro Bonetti and
James Briggs and
Frank Brombacher and
A. Maxwell Burroughs and
Andrea Califano and
Carlo V. Cannistraci and
Daniel Carbajo and
Yun Chen and
Marco Chierici and
Yari Ciani and
Hans Clevers and
Emiliano Dalla and
Carrie A. Davis and
Michael Detmar and
Alexander D. Diehl and
Taeko Dohi and
Finn Drabl{\o}s and
Albert S. B. Edge and
Matthias Edinger and
Karl Ekwall and
Mitsuhiro Endoh and
Hideki Enomoto and
Michela Fagiolini and
Lynsey Fairbairn and
Hai Fang and
Mary C. Farach{-}Carson and
Geoffrey J. Faulkner and
Alexander V. Favorov and
Malcolm E. Fisher and
Martin C. Frith and
Rie Fujita and
Shiro Fukuda and
Cesare Furlanello and
Masaaki Furuno and
Jun{-}ichi Furusawa and
Teunis B. Geijtenbeek and
Andrew P. Gibson and
Thomas R. Gingeras and
Daniel Goldowitz and
Julian Gough and
Sven Guhl and
Reto Guler and
Stefano Gustincich and
Thomas J. Ha and
Masahide Hamaguchi and
Mitsuko Hara and
Matthias Harbers and
Jayson Harshbarger and
Akira Hasegawa and
Yuki Hasegawa and
Takehiro Hashimoto and
Meenhard Herlyn and
Kelly J. Hitchens and
Shannan J. Ho Sui and
Oliver M. Hofmann and
Ilka Hoof and
Fumi Hori and
Lukasz Huminiecki and
Kei Iida and
Tomokatsu Ikawa and
Boris R. Jankovic and
Hui Jia and
Anagha Joshi and
Giuseppe Jurman and
Bogumil Kaczkowski and
Chieko Kai and
Kaoru Kaida and
Ai Kaiho and
Kazuhiro Kajiyama and
Mutsumi Kanamori{-}Katayama and
Artem S. Kasianov and
Takeya Kasukawa and
Shintaro Katayama and
Sachi Kato and
Shuji Kawaguchi and
Hiroshi Kawamoto and
Yuki I. Kawamura and
Tsugumi Kawashima and
Judith S. Kempfle and
Tony J. Kenna and
Juha Kere and
Levon M. Khachigian and
Toshio Kitamura and
S. Peter Klinken and
Alan J. Knox and
Miki Kojima and
Soichi Kojima and
Naoto Kondo and
Haruhiko Koseki and
Shigeo Koyasu and
Sarah Krampitz and
Atsutaka Kubosaki and
Andrew T. Kwon and
Jeroen F. J. Laros and
Weonju Lee and
Andreas Lennartsson and
Kang Li and
Berit Lilje and
Leonard Lipovich and
Alan Mackay{-}Sim and
Ri{-}ichiroh Manabe and
Jessica Cara Mar and
Benoit Marchand and
Anthony Mathelier and
Niklas Mejhert and
Alison M. Meynert and
Yosuke Mizuno and
David A. de Lima Morais and
Hiromasa Morikawa and
Mitsuru Morimoto and
Kazuyo Moro and
Efthymios Motakis and
Hozumi Motohashi and
Christine Mummery and
Mitsuyoshi Murata and
Sayaka Nagao{-}Sato and
Yutaka Nakachi and
Fumio Nakahara and
Toshiyuki Nakamura and
Yukio Nakamura and
Kenichi Nakazato and
Erik van Nimwegen and
Noriko Ninomiya and
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Tadasuke Nozaki and
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Mariko Okada{-}Hatakeyama and
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Shimon Sakaguchi and
Mizuho Sakai and
Hiroki Sato and
Hironori Sato and
Suzana Savvi and
Alka Saxena and
Claudio Schneider and
Erik A. Schultes and
Gundula G. Schulze{-}Tanzil and
Anita Schwegmann and
Thierry Sengstag and
Guojun Sheng and
Hisashi Shimoji and
Yishai Shimoni and
Jay W. Shin and
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Daisuke Sugiyama and
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author = {Sushil Tripathi and
Karen R. Christie and
Rama Balakrishnan and
Rachael P. Huntley and
David P. Hill and
Liv Thommesen and
Judith A. Blake and
Martin Kuiper and
Astrid L{\ae}greid},
title = {Gene Ontology annotation of sequence-specific {DNA} binding transcription
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journal = {Database J. Biol. Databases Curation},
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url = {https://doi.org/10.1093/database/bat062},
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biburl = {https://dblp.org/rec/journals/biodb/TripathiCBHHTBKL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
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author = {Terrence F. Meehan and
Nicole A. Vasilevsky and
Christopher J. Mungall and
David S. Dougall and
Melissa A. Haendel and
Judith A. Blake and
Alexander D. Diehl},
title = {Ontology based molecular signatures for immune cell types via gene
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year = {2013},
url = {https://doi.org/10.1186/1471-2105-14-263},
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biburl = {https://dblp.org/rec/journals/bmcbi/MeehanVMDHBD13.bib},
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author = {Carol J. Bult and
Janan T. Eppig and
Judith A. Blake and
James A. Kadin and
Joel E. Richardson},
title = {The Mouse Genome Database: Genotypes, Phenotypes, and Models of Human
Disease},
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Joel E. Richardson and
Allan Peter Davis and
Thomas C. Wiegers and
Carolyn J. Mattingly and
Mary E. Dolan and
Cynthia L. Smith and
Judith A. Blake and
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author = {Harold J. Drabkin and
Judith A. Blake},
title = {Manual Gene Ontology annotation workflow at the Mouse Genome Informatics
Database},
journal = {Database J. Biol. Databases Curation},
volume = {2012},
year = {2012},
url = {https://doi.org/10.1093/database/bas045},
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author = {Pascale Gaudet and
Cecilia N. Arighi and
Frederic B. Bastian and
Alex Bateman and
Judith A. Blake and
J. Michael Cherry and
Peter D'Eustachio and
Robert D. Finn and
Michelle G. Giglio and
Lynette Hirschman and
Renate Kania and
William Klimke and
Maria Jesus Martin and
Ilene Karsch{-}Mizrachi and
Monica C. Munoz{-}Torres and
Darren A. Natale and
Claire O'Donovan and
B. F. Francis Ouellette and
Kim D. Pruitt and
Marc Robinson{-}Rechavi and
Susanna{-}Assunta Sansone and
Paul N. Schofield and
Granger G. Sutton and
Kimberly Van Auken and
Sona Vasudevan and
Cathy H. Wu and
Jasmine Young and
Raja Mazumder},
title = {Recent advances in biocuration: Meeting Report from the fifth International
Biocuration Conference},
journal = {Database J. Biol. Databases Curation},
volume = {2012},
year = {2012},
url = {https://doi.org/10.1093/database/bas036},
doi = {10.1093/DATABASE/BAS036},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GaudetABBBCDFGHKKMKMNOOPRSSSAVWYM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BadaEEGSSBCVBH12,
author = {Michael Bada and
Miriam Eckert and
Donald Evans and
Kristin Garcia and
Krista Shipley and
Dmitry Sitnikov and
William A. Baumgartner Jr. and
K. Bretonnel Cohen and
Karin Verspoor and
Judith A. Blake and
Lawrence E. Hunter},
title = {Concept annotation in the {CRAFT} corpus},
journal = {{BMC} Bioinform.},
volume = {13},
pages = {161},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-161},
doi = {10.1186/1471-2105-13-161},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BadaEEGSSBCVBH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/EppigBBKRG12,
author = {Janan T. Eppig and
Judith A. Blake and
Carol J. Bult and
James A. Kadin and
Joel E. Richardson},
title = {The Mouse Genome Database {(MGD):} comprehensive resource for genetics
and genomics of the laboratory mouse},
journal = {Nucleic Acids Res.},
volume = {40},
number = {Database-Issue},
pages = {881--886},
year = {2012},
url = {https://doi.org/10.1093/nar/gkr974},
doi = {10.1093/NAR/GKR974},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/EppigBBKRG12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/ThomasWMLB12,
author = {Paul D. Thomas and
Valerie Wood and
Christopher J. Mungall and
Suzanna E. Lewis and
Judith A. Blake},
title = {On the Use of Gene Ontology Annotations to Assess Functional Similarity
among Orthologs and Paralogs: {A} Short Report},
journal = {PLoS Comput. Biol.},
volume = {8},
number = {2},
year = {2012},
url = {https://doi.org/10.1371/journal.pcbi.1002386},
doi = {10.1371/JOURNAL.PCBI.1002386},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/ThomasWMLB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/HuangLDGDBT12,
author = {Jingshan Huang and
Xingyu Lu and
Dejing Dou and
William T. Gerthoffer and
Jiangbo Dang and
Judith A. Blake and
Ming Tan},
title = {An ontology-based MicroRNA knowledge sharing and acquisition framework},
booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine
Workshops, {BIBMW} 2012, Philadelphia, USA, October 4-7, 2012},
pages = {740--747},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/BIBMW.2012.6470228},
doi = {10.1109/BIBMW.2012.6470228},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/HuangLDGDBT12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/NiBKRREB12,
author = {Li Ni and
Carol J. Bult and
James A. Kadin and
Joel E. Richardson and
Martin Ringwald and
Janan T. Eppig and
Judith A. Blake},
editor = {Ronald Cornet and
Robert Stevens},
title = {Using Biomedical Ontologies for Data Representation and Management
in the Mouse Genome Informatics {(MGI)} System},
booktitle = {Proceedings of the 3rd International Conference on Biomedical Ontology
{(ICBO} 2012), {KR-MED} Series, Graz, Austria, July 21-25, 2012},
series = {{CEUR} Workshop Proceedings},
volume = {897},
publisher = {CEUR-WS.org},
year = {2012},
url = {https://ceur-ws.org/Vol-897/poster\_3.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/NiBKRREB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11,
author = {Pascale Gaudet and
Amos Bairoch and
Dawn Field and
Susanna{-}Assunta Sansone and
Chris F. Taylor and
Teresa K. Attwood and
Alex Bateman and
Judith A. Blake and
Carol J. Bult and
J. Michael Cherry and
Rex L. Chisholm and
Guy Cochrane and
Charles E. Cook and
Janan T. Eppig and
Michael Y. Galperin and
Robert Gentleman and
Carole A. Goble and
Takashi Gojobori and
John M. Hancock and
Douglas G. Howe and
Tadashi Imanishi and
Janet Kelso and
David Landsman and
Suzanna E. Lewis and
Ilene Karsch{-}Mizrachi and
Sandra E. Orchard and
B. F. Francis Ouellette and
Shoba Ranganathan and
Lorna J. Richardson and
Philippe Rocca{-}Serra and
Paul N. Schofield and
Damian Smedley and
Christopher Southan and
Tin Wee Tan and
Tatiana A. Tatusova and
Patricia L. Whetzel and
Owen White and
Chisato Yamasaki},
title = {Towards BioDBcore: a community-defined information specification for
biological databases},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/baq027},
doi = {10.1093/DATABASE/BAQ027},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MeehanMACBMD11,
author = {Terrence F. Meehan and
Anna Maria Masci and
Amina Abdulla and
Lindsay G. Cowell and
Judith A. Blake and
Christopher J. Mungall and
Alexander D. Diehl},
title = {Logical Development of the Cell Ontology},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {6},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-6},
doi = {10.1186/1471-2105-12-6},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MeehanMACBMD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BultDENARRDSBW11,
author = {Carol J. Bult and
Harold J. Drabkin and
Alexei V. Evsikov and
Darren A. Natale and
Cecilia N. Arighi and
Natalia V. Roberts and
Alan Ruttenberg and
Peter D'Eustachio and
Barry Smith and
Judith A. Blake and
Cathy H. Wu},
title = {The Representation of Protein Complexes in the Protein Ontology {(PRO)}},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {371},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-371},
doi = {10.1186/1471-2105-12-371},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/BultDENARRDSBW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/DiehlABCGGMMMNPPSYZM11,
author = {Alexander D. Diehl and
Alison Deckhut Augustine and
Judith A. Blake and
Lindsay G. Cowell and
Elizabeth S. Gold and
Timothy A. Gondr{\'{e}}{-}Lewis and
Anna Maria Masci and
Terrence F. Meehan and
Penelope A. Morel and
Anastasia Nijnik and
Bjoern Peters and
Bali Pulendran and
Richard H. Scheuermann and
Q. Alison Yao and
Martin S. Zand and
Christopher J. Mungall},
title = {Hematopoietic cell types: Prototype for a revised cell ontology},
journal = {J. Biomed. Informatics},
volume = {44},
number = {1},
pages = {75--79},
year = {2011},
url = {https://doi.org/10.1016/j.jbi.2010.01.006},
doi = {10.1016/J.JBI.2010.01.006},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/DiehlABCGGMMMNPPSYZM11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/MeehanCJBCB11,
author = {Terrence F. Meehan and
Christopher J. Carr and
Jeremy J. Jay and
Carol J. Bult and
Elissa J. Chesler and
Judith A. Blake},
title = {Autism candidate genes via mouse phenomics},
journal = {J. Biomed. Informatics},
volume = {44},
number = {Supplement-1},
pages = {S5--S11},
year = {2011},
url = {https://doi.org/10.1016/j.jbi.2011.03.003},
doi = {10.1016/J.JBI.2011.03.003},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/MeehanCJBCB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11,
author = {Pascale Gaudet and
Amos Bairoch and
Dawn Field and
Susanna{-}Assunta Sansone and
Chris F. Taylor and
Teresa K. Attwood and
Alex Bateman and
Judith A. Blake and
Carol J. Bult and
J. Michael Cherry and
Rex L. Chisholm and
Guy Cochrane and
Charles E. Cook and
Janan T. Eppig and
Michael Y. Galperin and
Robert Gentleman and
Carole A. Goble and
Takashi Gojobori and
John M. Hancock and
Douglas G. Howe and
Tadashi Imanishi and
Janet Kelso and
David Landsman and
Suzanna E. Lewis and
Ilene Karsch{-}Mizrachi and
Sandra E. Orchard and
B. F. Francis Ouellette and
Shoba Ranganathan and
Lorna J. Richardson and
Philippe Rocca{-}Serra and
Paul N. Schofield and
Damian Smedley and
Christopher Southan and
Tin Wee Tan and
Tatiana A. Tatusova and
Patricia L. Whetzel and
Owen White and
Chisato Yamasaki},
title = {Towards BioDBcore: a community-defined information specification for
biological databases},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {7--10},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1173},
doi = {10.1093/NAR/GKQ1173},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/GaudetBFSTABBBCCCCEGGGGHHIKLLKOORRRSSSTTWWY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/NataleABBBCDDEHNRSZW11,
author = {Darren A. Natale and
Cecilia N. Arighi and
Winona C. Barker and
Judith A. Blake and
Carol J. Bult and
Michael Caudy and
Harold J. Drabkin and
Peter D'Eustachio and
Alexei V. Evsikov and
Hongzhan Huang and
Jules Nchoutmboube and
Natalia V. Roberts and
Barry Smith and
Jian Zhang and
Cathy H. Wu},
title = {The Protein Ontology: a structured representation of protein forms
and complexes},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {539--545},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq907},
doi = {10.1093/NAR/GKQ907},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/NataleABBBCDDEHNRSZW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlakeBKREG11,
author = {Judith A. Blake and
Carol J. Bult and
James A. Kadin and
Joel E. Richardson and
Janan T. Eppig},
title = {The Mouse Genome Database {(MGD):} premier model organism resource
for mammalian genomics and genetics},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {842--848},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1008},
doi = {10.1093/NAR/GKQ1008},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlakeBKREG11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/ArighiNBBCDDDEHRRSZW11,
author = {Cecilia N. Arighi and
Darren A. Natale and
Judith A. Blake and
Carol J. Bult and
Michael Caudy and
Alexander D. Diehl and
Harold J. Drabkin and
Peter D'Eustachio and
Alexei V. Evsikov and
Hongzhan Huang and
Natalia V. Roberts and
Alan Ruttenberg and
Barry Smith and
Jian Zhang and
Cathy H. Wu},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Protein-Centric Connection of Biomedical Knowledge: Protein Ontology
{(PRO)} Research and Annotation Tools},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper49.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/ArighiNBBCDDDEHRRSZW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/BelloDWDSRBME11,
author = {Susan M. Bello and
Allan Peter Davis and
Thomas C. Wiegers and
Mary E. Dolan and
Cynthia L. Smith and
Joel E. Richardson and
Judith A. Blake and
Carolyn J. Mattingly and
Janan T. Eppig},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Waiting for a Robust Disease Ontology: {A} Merger of {OMIM} and MeSH
as a Practical Interim Solution},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper31.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/BelloDWDSRBME11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/MeehanMBD11,
author = {Terrence F. Meehan and
Christopher J. Mungall and
Judith A. Blake and
Alexander D. Diehl},
editor = {Olivier Bodenreider and
Maryann E. Martone and
Alan Ruttenberg},
title = {Gene Ontology Signatures for Immune Cell-Types Inferred by Gene Expression
Analysis},
booktitle = {Proceedings of the 2nd International Conference on Biomedical Ontology,
Buffalo, NY, USA, July 26-30, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {833},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-833/paper41.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icbo/MeehanMBD11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/VisionBLMW11,
author = {Todd J. Vision and
Judith A. Blake and
Hilmar Lapp and
Paula M. Mabee and
Monte Westerfield},
editor = {Tomi Kauppinen and
Line C. Pouchard and
Carsten Ke{\ss}ler},
title = {Similarity Between Semantic Description Sets: Addressing Needs Beyond
Data Integration},
booktitle = {Proceedings of the First International Workshop on Linked Science
2011, Bonn, Germany, October 24, 2011},
series = {{CEUR} Workshop Proceedings},
volume = {783},
publisher = {CEUR-WS.org},
year = {2011},
url = {https://ceur-ws.org/Vol-783/paper8.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:04 +0100},
biburl = {https://dblp.org/rec/conf/semweb/VisionBLMW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BultKRBE10,
author = {Carol J. Bult and
James A. Kadin and
Joel E. Richardson and
Judith A. Blake and
Janan T. Eppig},
title = {The Mouse Genome Database: enhancements and updates},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {586--592},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp880},
doi = {10.1093/NAR/GKP880},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BultKRBE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ao/DolanB09,
author = {Mary E. Dolan and
Judith A. Blake},
title = {Using ontology visualization to facilitate access to knowledge about
human disease genes},
journal = {Appl. Ontology},
volume = {4},
number = {1},
pages = {35--49},
year = {2009},
url = {https://doi.org/10.3233/AO-2009-0064},
doi = {10.3233/AO-2009-0064},
timestamp = {Tue, 14 Jul 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ao/DolanB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/DowellMHDB09,
author = {Karen G. Dowell and
Monica S. McAndrews{-}Hill and
David P. Hill and
Harold J. Drabkin and
Judith A. Blake},
title = {Integrating text mining into the {MGI} biocuration workflow},
journal = {Database J. Biol. Databases Curation},
volume = {2009},
year = {2009},
url = {https://doi.org/10.1093/database/bap019},
doi = {10.1093/DATABASE/BAP019},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/DowellMHDB09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/SamMLBFL09,
author = {Lee T. Sam and
Eneida A. Mendon{\c{c}}a and
Jianrong Li and
Judith A. Blake and
Carol Friedman and
Yves A. Lussier},
title = {PhenoGO: an integrated resource for the multiscale mining of clinical
and biological data},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-2}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S2-S8},
doi = {10.1186/1471-2105-10-S2-S8},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/SamMLBFL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArighiLNBDBSW09,
author = {Cecilia N. Arighi and
Hongfang Liu and
Darren A. Natale and
Winona C. Barker and
Harold J. Drabkin and
Judith A. Blake and
Barry Smith and
Cathy H. Wu},
title = {TGF-beta signaling proteins and the Protein Ontology},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-5}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S5-S3},
doi = {10.1186/1471-2105-10-S5-S3},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ArighiLNBDBSW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlakeBEKR09,
author = {Judith A. Blake and
Carol J. Bult and
Janan T. Eppig and
James A. Kadin and
Joel E. Richardson},
title = {The Mouse Genome Database genotypes: : phenotypes},
journal = {Nucleic Acids Res.},
volume = {37},
number = {Database-Issue},
pages = {712--719},
year = {2009},
url = {https://doi.org/10.1093/nar/gkn886},
doi = {10.1093/NAR/GKN886},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlakeBEKR09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/AlterovitzBDER09,
author = {Gil Alterovitz and
Judith A. Blake and
Jonathan M. Dreyfuss and
Drew Endy and
Marco Ramoni},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany Murray and
Teri E. Klein},
title = {Session Introduction},
booktitle = {Biocomputing 2009: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, 5-9 January 2009},
pages = {1--3},
year = {2009},
url = {http://psb.stanford.edu/psb-online/proceedings/psb09/intro-biomole.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/AlterovitzBDER09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/HillSMB08,
author = {David P. Hill and
Barry Smith and
Monica S. McAndrews{-}Hill and
Judith A. Blake},
title = {Gene Ontology annotations: what they mean and where they come from},
journal = {{BMC} Bioinform.},
volume = {9},
number = {{S-5}},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-S5-S2},
doi = {10.1186/1471-2105-9-S5-S2},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/HillSMB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BultEKRB08,
author = {Carol J. Bult and
Janan T. Eppig and
James A. Kadin and
Joel E. Richardson and
Judith A. Blake},
title = {The Mouse Genome Database {(MGD):} mouse biology and model systems},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {724--728},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm961},
doi = {10.1093/NAR/GKM961},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BultEKRB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/AnagnostopoulosBBRRKE08,
author = {Anna V. Anagnostopoulos and
Judith A. Blake and
Carol J. Bult and
Martin Ringwald and
Joel E. Richardson and
James A. Kadin and
Janan T. Eppig},
title = {Using bio-ontologies as data annotation, integration {\&} analytical
tools at the Mouse Genome Informatics resource},
booktitle = {Proceedings of the 8th {IEEE} International Conference on Bioinformatics
and Bioengineering, {BIBE} 2008, October 8-10, 2008, Athens, Greece},
pages = {1--7},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/BIBE.2008.4696717},
doi = {10.1109/BIBE.2008.4696717},
timestamp = {Thu, 14 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/AnagnostopoulosBBRRKE08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/DrabkinAWB08,
author = {Harold J. Drabkin and
Cecilia N. Arighi and
Cathy H. Wu and
Judith A. Blake},
editor = {Hamid R. Arabnia and
Mary Qu Yang and
Jack Y. Yang},
title = {Functional Annotation of Protein Isoforms and Modified Forms},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
2 Volumes},
pages = {701--707},
publisher = {{CSREA} Press},
year = {2008},
timestamp = {Tue, 30 Jun 2009 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/biocomp/DrabkinAWB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DiehlLSB07,
author = {Alexander D. Diehl and
Jamie A. Lee and
Richard H. Scheuermann and
Judith A. Blake},
title = {Ontology development for biological systems: immunology},
journal = {Bioinform.},
volume = {23},
number = {7},
pages = {913--915},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm029},
doi = {10.1093/BIOINFORMATICS/BTM029},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/DiehlLSB07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NataleABBCHLSW07,
author = {Darren A. Natale and
Cecilia N. Arighi and
Winona C. Barker and
Judith A. Blake and
Ti{-}Cheng Chang and
Zhang{-}Zhi Hu and
Hongfang Liu and
Barry Smith and
Cathy H. Wu},
title = {Framework for a Protein Ontology},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-9}},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-S9-S1},
doi = {10.1186/1471-2105-8-S9-S1},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NataleABBCHLSW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/EppigBBKR07,
author = {Janan T. Eppig and
Judith A. Blake and
Carol J. Bult and
James A. Kadin and
Joel E. Richardson},
title = {The mouse genome database {(MGD):} new features facilitating a model
system},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {630--637},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl940},
doi = {10.1093/NAR/GKL940},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/EppigBBKR07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/BlakeB06,
author = {Judith A. Blake and
Carol J. Bult},
title = {Beyond the data deluge: Data integration and bio-ontologies},
journal = {J. Biomed. Informatics},
volume = {39},
number = {3},
pages = {314--320},
year = {2006},
url = {https://doi.org/10.1016/j.jbi.2006.01.003},
doi = {10.1016/J.JBI.2006.01.003},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/BlakeB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlakeEBKR06,
author = {Judith A. Blake and
Janan T. Eppig and
Carol J. Bult and
James A. Kadin and
Joel E. Richardson},
title = {The Mouse Genome Database {(MGD):} updates and enhancements},
journal = {Nucleic Acids Res.},
volume = {34},
number = {Database-Issue},
pages = {562--567},
year = {2006},
url = {https://doi.org/10.1093/nar/gkj085},
doi = {10.1093/NAR/GKJ085},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlakeEBKR06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/XuKBF06,
author = {Hua Xu and
Debra M. Krupke and
Judith A. Blake and
Carol Friedman},
title = {A Natural Language Processing {(NLP)} Tool to Assist in the Curation
Of the Laboratory Mouse Tumor Biology Database},
booktitle = {{AMIA} 2006, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 11-15, 2006},
publisher = {{AMIA}},
year = {2006},
url = {https://knowledge.amia.org/amia-55142-a2006a-1.620145/t-002-1.622268/f-001-1.622269/a-478-1.622305/a-479-1.622302},
timestamp = {Wed, 17 Apr 2024 11:48:16 +0200},
biburl = {https://dblp.org/rec/conf/amia/XuKBF06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/DolanB06,
author = {Mary E. Dolan and
Judith A. Blake},
title = {Using Ontology Visualization to Coordinate Cross-species Functional
Annotation for Human Disease Genes},
booktitle = {19th {IEEE} International Symposium on Computer-Based Medical Systems
{(CBMS} 2006), 22-23 June 2006, Salt Lake City, Utah, {USA}},
pages = {583--587},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/CBMS.2006.165},
doi = {10.1109/CBMS.2006.165},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cbms/DolanB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/krmed/DolanB06,
author = {Mary E. Dolan and
Judith A. Blake},
editor = {Olivier Bodenreider},
title = {Using Ontology Graphs to Understand Annotations and Reason about Them},
booktitle = {{KR-MED} 2006, Formal Biomedical Knowledge Representation, Proceedings
of the Second International Workshop on Formal Biomedical Knowledge
Representation: "Biomedical Ontology in Action" {(KR-MED} 2006), Collocated
with the 4th International Conference on Formal Ontology in Information
Systems (FOIS-2006), Baltimore, Maryland, USA, November 8, 2006},
series = {{CEUR} Workshop Proceedings},
volume = {222},
publisher = {CEUR-WS.org},
year = {2006},
url = {https://ceur-ws.org/Vol-222/krmed2006-p03.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:31 +0100},
biburl = {https://dblp.org/rec/conf/krmed/DolanB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DrabkinHHB05,
author = {Harold J. Drabkin and
Christopher Hollenbeck and
David P. Hill and
Judith A. Blake},
title = {Ontological visualization of protein-protein interactions},
journal = {{BMC} Bioinform.},
volume = {6},
pages = {29},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-29},
doi = {10.1186/1471-2105-6-29},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/DrabkinHHB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/EppigBKRB05,
author = {Janan T. Eppig and
Carol J. Bult and
James A. Kadin and
Joel E. Richardson and
Judith A. Blake},
title = {The Mouse Genome Database {(MGD):} from genes to mice - a community
resource for mouse biology},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {471--475},
year = {2005},
url = {https://doi.org/10.1093/nar/gki113},
doi = {10.1093/NAR/GKI113},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/EppigBKRB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csb/QiBKRREB05,
author = {Donnie Qi and
Judith A. Blake and
James A. Kadin and
Joel E. Richardson and
Martin Ringwald and
Janan T. Eppig and
Carol J. Bult},
title = {Data Integration in the Mouse Genome Informatics {(MGI)} Database},
booktitle = {Fourth International {IEEE} Computer Society Computational Systems
Bioinformatics Conference Workshops {\&} Poster Abstracts, {CSB}
2005 Workshops, Stanford, CA, USA, August 8-11, 2005},
pages = {37--38},
publisher = {{IEEE} Computer Society},
year = {2005},
url = {https://doi.org/10.1109/CSBW.2005.48},
doi = {10.1109/CSBW.2005.48},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csb/QiBKRREB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/DolanNCB05,
author = {Mary E. Dolan and
Li Ni and
Evelyn Camon and
Judith A. Blake},
title = {A procedure for assessing {GO} annotation consistency},
booktitle = {Proceedings Thirteenth International Conference on Intelligent Systems
for Molecular Biology 2005, Detroit, MI, USA, 25-29 June 2005},
pages = {136--143},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bti1019},
doi = {10.1093/BIOINFORMATICS/BTI1019},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ismb/DolanNCB05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BultBRKE04,
author = {Carol J. Bult and
Judith A. Blake and
Joel E. Richardson and
James A. Kadin and
Janan T. Eppig},
title = {The Mouse Genome Database {(MGD):} integrating biology with the genome},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {476--481},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh125},
doi = {10.1093/NAR/GKH125},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BultBRKE04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HillBFHMSBCBEKRR04,
author = {David P. Hill and
Dale A. Begley and
Jacqueline H. Finger and
Terry F. Hayamizu and
Ingeborg J. McCright and
Constance M. Smith and
Jon S. Beal and
Lori E. Corbani and
Judith A. Blake and
Janan T. Eppig and
James A. Kadin and
Joel E. Richardson and
Martin Ringwald},
title = {The mouse Gene Expression Database {(GXD):} updates and enhancements},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {568--571},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh069},
doi = {10.1093/NAR/GKH069},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HillBFHMSBCBEKRR04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ws/BadaSGGABCHL04,
author = {Michael Bada and
Robert Stevens and
Carole A. Goble and
Yolanda Gil and
Michael Ashburner and
Judith A. Blake and
J. Michael Cherry and
Midori A. Harris and
Suzanna Lewis},
title = {A short study on the success of the Gene Ontology},
journal = {J. Web Semant.},
volume = {1},
number = {2},
pages = {235--240},
year = {2004},
url = {https://doi.org/10.1016/j.websem.2003.12.003},
doi = {10.1016/J.WEBSEM.2003.12.003},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ws/BadaSGGABCHL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icde/RichardsonKBBER04,
author = {Joel E. Richardson and
James A. Kadin and
Judith A. Blake and
Carol J. Bult and
Janan T. Eppig and
Martin Ringwald},
editor = {Z. Meral {\"{O}}zsoyoglu and
Stanley B. Zdonik},
title = {From Sipping on a Straw to Drinking from a Fire Hose: Data Integration
in a Public Genome Database},
booktitle = {Proceedings of the 20th International Conference on Data Engineering,
{ICDE} 2004, 30 March - 2 April 2004, Boston, MA, {USA}},
pages = {795--798},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/ICDE.2004.1320050},
doi = {10.1109/ICDE.2004.1320050},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icde/RichardsonKBBER04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/TuasonCLBF04,
author = {Olivia Tuason and
Lifeng Chen and
Hongfang Liu and
Judith A. Blake and
Carol Friedman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany A. Jung and
Teri E. Klein},
title = {Biological Nomenclatures: {A} Source of Lexical Knowledge and Ambiguity},
booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA,
6-10 January 2004},
pages = {238--249},
publisher = {World Scientific},
year = {2004},
url = {http://psb.stanford.edu/psb-online/proceedings/psb04/tuason.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/TuasonCLBF04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlakeRBKE03,
author = {Judith A. Blake and
Joel E. Richardson and
Carol J. Bult and
James A. Kadin and
Janan T. Eppig},
title = {{MGD:} the Mouse Genome Database},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {193--195},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg047},
doi = {10.1093/NAR/GKG047},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlakeRBKE03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlakeRBKE03a,
author = {Judith A. Blake and
Joel E. Richardson and
Carol J. Bult and
James A. Kadin and
Janan T. Eppig},
title = {The Mouse Genome Database {(MGD):} the model organism database for
the laboratory mouse},
journal = {Nucleic Acids Res.},
volume = {30},
number = {1},
pages = {113--115},
year = {2002},
url = {https://doi.org/10.1093/nar/30.1.113},
doi = {10.1093/NAR/30.1.113},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlakeRBKE03a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlakeERBK01,
author = {Judith A. Blake and
Janan T. Eppig and
Joel E. Richardson and
Carol J. Bult and
James A. Kadin},
title = {The Mouse Genome Database {(MGD):} integration nexus for the laboratory
mouse},
journal = {Nucleic Acids Res.},
volume = {29},
number = {1},
pages = {91--94},
year = {2001},
url = {https://doi.org/10.1093/nar/29.1.91},
doi = {10.1093/NAR/29.1.91},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlakeERBK01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlakeERD00,
author = {Judith A. Blake and
Janan T. Eppig and
Joel E. Richardson and
Muriel T. Davisson},
title = {The Mouse Genome Database {(MGD):} expanding genetic and genomic resources
for the laboratory mouse},
journal = {Nucleic Acids Res.},
volume = {28},
number = {1},
pages = {108--111},
year = {2000},
url = {https://doi.org/10.1093/nar/28.1.108},
doi = {10.1093/NAR/28.1.108},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlakeERD00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/BultRBKRE00,
author = {Carol J. Bult and
Joel E. Richardson and
Judith A. Blake and
James A. Kadin and
Martin Ringwald and
Janan T. Eppig},
editor = {Nikolaos G. Bourbakis},
title = {Mouse Genome Informatics in a New Age of Biological Inquiry},
booktitle = {1st {IEEE} International Symposium on Bioinformatics and Biomedical
Engineering, Arlington, Virginia, USA, November 8-10, 2000, Proceedings},
pages = {29--32},
publisher = {{IEEE} Computer Society},
year = {2000},
url = {https://doi.org/10.1109/BIBE.2000.889586},
doi = {10.1109/BIBE.2000.889586},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/BultRBKRE00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlakeRDE99,
author = {Judith A. Blake and
Joel E. Richardson and
Muriel T. Davisson and
Janan T. Eppig},
title = {The Mouse Genome Database {(MGD):} genetic and genomic information
about the laboratory mouse. The Mouse Genome Database Group},
journal = {Nucleic Acids Res.},
volume = {27},
number = {1},
pages = {95--98},
year = {1999},
url = {https://doi.org/10.1093/nar/27.1.95},
doi = {10.1093/NAR/27.1.95},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlakeRDE99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlakeERD98,
author = {Judith A. Blake and
Janan T. Eppig and
Joel E. Richardson and
Muriel T. Davisson},
title = {The Mouse Genome Database {(MGD):} a community resource. Status and
enhancements. The Mouse Genome Informatics Group},
journal = {Nucleic Acids Res.},
volume = {26},
number = {1},
pages = {130--137},
year = {1998},
url = {https://doi.org/10.1093/nar/26.1.130},
doi = {10.1093/NAR/26.1.130},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlakeERD98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BlakeRDE97,
author = {Judith A. Blake and
Joel E. Richardson and
Muriel T. Davisson and
Janan T. Eppig},
title = {The Mouse Genome Database {(MGD).} {A} comprehensive public resource
of genetic, phenotypic and genomic data. The Mouse Genome Informatics
Group},
journal = {Nucleic Acids Res.},
volume = {25},
number = {1},
pages = {85--91},
year = {1997},
url = {https://doi.org/10.1093/nar/25.1.85},
doi = {10.1093/NAR/25.1.85},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BlakeRDE97.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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