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ORCIDBibTeX records: Pavel V. Baranov
@article{DBLP:journals/nar/KiniryJMB21,
author = {Stephen J. Kiniry and
Ciara E. Judge and
Audrey M. Michel and
Pavel V. Baranov},
title = {Trips-Viz: an environment for the analysis of public and user-generated
ribosome profiling data},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Webserver-Issue},
pages = {662--670},
year = {2021},
url = {https://doi.org/10.1093/nar/gkab323},
doi = {10.1093/NAR/GKAB323},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KiniryJMB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KiniryOMB19,
author = {Stephen J. Kiniry and
Patrick B. F. O'Connor and
Audrey M. Michel and
Pavel V. Baranov},
title = {Trips-Viz: a transcriptome browser for exploring Ribo-Seq data},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D847--D852},
year = {2019},
url = {https://doi.org/10.1093/nar/gky842},
doi = {10.1093/NAR/GKY842},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KiniryOMB19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/KarimMZBSR18,
author = {Md. Rezaul Karim and
Audrey M. Michel and
Achille Zappa and
Pavel V. Baranov and
Ratnesh Sahay and
Dietrich Rebholz{-}Schuhmann},
title = {Improving data workflow systems with cloud services and use of open
data for bioinformatics research},
journal = {Briefings Bioinform.},
volume = {19},
number = {5},
pages = {1035--1050},
year = {2018},
url = {https://doi.org/10.1093/bib/bbx039},
doi = {10.1093/BIB/BBX039},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/KarimMZBSR18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MichelKOMB18,
author = {Audrey M. Michel and
Stephen J. Kiniry and
Patrick B. F. O'Connor and
James P. A. Mullan and
Pavel V. Baranov},
title = {GWIPS-viz: 2018 update},
journal = {Nucleic Acids Res.},
volume = {46},
number = {Database-Issue},
pages = {D823--D830},
year = {2018},
url = {https://doi.org/10.1093/nar/gkx790},
doi = {10.1093/NAR/GKX790},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MichelKOMB18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/MichelAB14,
author = {Audrey M. Michel and
Dmitry E. Andreev and
Pavel V. Baranov},
title = {Computational approach for calculating the probability of eukaryotic
translation initiation from ribo-seq data that takes into account
leaky scanning},
journal = {{BMC} Bioinform.},
volume = {15},
pages = {380},
year = {2014},
url = {https://doi.org/10.1186/s12859-014-0380-4},
doi = {10.1186/S12859-014-0380-4},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/MichelAB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MichelFKBOHMDHB14,
author = {Audrey M. Michel and
Gearoid Fox and
Anmol M. Kiran and
Christof De Bo and
Patrick B. F. O'Connor and
Stephen M. Heaphy and
James P. A. Mullan and
Claire A. Donohue and
Desmond G. Higgins and
Pavel V. Baranov},
title = {GWIPS-viz: development of a ribo-seq genome browser},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {859--864},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt1035},
doi = {10.1093/NAR/GKT1035},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MichelFKBOHMDHB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/OConnorLWAB13,
author = {Patrick B. F. O'Connor and
Gene{-}Wei Li and
Jonathan S. Weissman and
John F. Atkins and
Pavel V. Baranov},
title = {rRNA: mRNA pairing alters the length and the symmetry of mRNA-protected
fragments in ribosome profiling experiments},
journal = {Bioinform.},
volume = {29},
number = {12},
pages = {1488--1491},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt184},
doi = {10.1093/BIOINFORMATICS/BTT184},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/OConnorLWAB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/AntonovBB13,
author = {Ivan Antonov and
Pavel V. Baranov and
Mark Borodovsky},
title = {GeneTack database: genes with frameshifts in prokaryotic genomes and
eukaryotic mRNA sequences},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {152--156},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1062},
doi = {10.1093/NAR/GKS1062},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/AntonovBB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KiranOSB13,
author = {Anmol M. Kiran and
John J. O'Mahony and
Komal Sanjeev and
Pavel V. Baranov},
title = {Darned in 2013: inclusion of model organisms and linking with Wikipedia},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {258--261},
year = {2013},
url = {https://doi.org/10.1093/nar/gks961},
doi = {10.1093/NAR/GKS961},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/KiranOSB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SharmaMPB12,
author = {Virag Sharma and
David P. Murphy and
Gregory M. Provan and
Pavel V. Baranov},
title = {CodonLogo: a sequence logo-based viewer for codon patterns},
journal = {Bioinform.},
volume = {28},
number = {14},
pages = {1935--1936},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts295},
doi = {10.1093/BIOINFORMATICS/BTS295},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/SharmaMPB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KiranB10,
author = {Anmol M. Kiran and
Pavel V. Baranov},
title = {{DARNED:} a DAtabase of RNa EDiting in humans},
journal = {Bioinform.},
volume = {26},
number = {14},
pages = {1772--1776},
year = {2010},
url = {https://doi.org/10.1093/bioinformatics/btq285},
doi = {10.1093/BIOINFORMATICS/BTQ285},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/KiranB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BekaertFZGAB10,
author = {Micha{\"{e}}l Bekaert and
Andrew E. Firth and
Yan Zhang and
Vadim N. Gladyshev and
John F. Atkins and
Pavel V. Baranov},
title = {Recode-2: new design, new search tools, and many more genes},
journal = {Nucleic Acids Res.},
volume = {38},
number = {Database-Issue},
pages = {69--74},
year = {2010},
url = {https://doi.org/10.1093/nar/gkp788},
doi = {10.1093/NAR/GKP788},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BekaertFZGAB10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/BekaertIAB08,
author = {Micha{\"{e}}l Bekaert and
Ivaylo P. Ivanov and
John F. Atkins and
Pavel V. Baranov},
title = {Ornithine decarboxylase antizyme finder {(OAF):} Fast and reliable
detection of antizymes with frameshifts in mRNAs},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-178},
doi = {10.1186/1471-2105-9-178},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/BekaertIAB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BekaertAB06,
author = {Micha{\"{e}}l Bekaert and
John F. Atkins and
Pavel V. Baranov},
title = {{ARFA:} a program for annotating bacterial release factor genes, including
prediction of programmed ribosomal frameshifting},
journal = {Bioinform.},
volume = {22},
number = {20},
pages = {2463--2465},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/btl430},
doi = {10.1093/BIOINFORMATICS/BTL430},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/BekaertAB06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BaranovGHGA03,
author = {Pavel V. Baranov and
Olga L. Gurvich and
Andrew W. Hammer and
Raymond F. Gesteland and
John F. Atkins},
title = {{RECODE} 2003},
journal = {Nucleic Acids Res.},
volume = {31},
number = {1},
pages = {87--89},
year = {2003},
url = {https://doi.org/10.1093/nar/gkg024},
doi = {10.1093/NAR/GKG024},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BaranovGHGA03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BaranovGFPMGAG01,
author = {Pavel V. Baranov and
Olga L. Gurvich and
Olivier Fayet and
Marie Fran{\c{c}}oise Pr{\`{e}}re and
W. Allen Miller and
Raymond F. Gesteland and
John F. Atkins and
Michael C. Giddings},
title = {{RECODE:} a database of frameshifting, bypassing and codon redefinition
utilized for gene expression},
journal = {Nucleic Acids Res.},
volume = {29},
number = {1},
pages = {264--267},
year = {2001},
url = {https://doi.org/10.1093/nar/29.1.264},
doi = {10.1093/NAR/29.1.264},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BaranovGFPMGAG01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BaranovKGSB99,
author = {Pavel V. Baranov and
Andrew V. Kubarenko and
Olga L. Gurvich and
Tatyana A. Shamolina and
Richard Brimacombe},
title = {The Database of Ribosomal Cross-links: an update},
journal = {Nucleic Acids Res.},
volume = {27},
number = {1},
pages = {184--185},
year = {1999},
url = {https://doi.org/10.1093/nar/27.1.184},
doi = {10.1093/NAR/27.1.184},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BaranovKGSB99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BaranovSDBB98,
author = {Pavel V. Baranov and
Petr V. Sergiev and
Olga A. Dontsova and
Alexey A. Bogdanov and
Richard Brimacombe},
title = {The Database of Ribosomal Cross links {(DRC)}},
journal = {Nucleic Acids Res.},
volume = {26},
number = {1},
pages = {187--189},
year = {1998},
url = {https://doi.org/10.1093/nar/26.1.187},
doi = {10.1093/NAR/26.1.187},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BaranovSDBB98.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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