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ORCIDBibTeX records: Sadaf R. Alam
@article{DBLP:journals/ijhpca/AlamGKMS23,
author = {Sadaf R. Alam and
Miguel Gila and
Mark Klein and
Maxime Martinasso and
Thomas C. Schulthess},
title = {Versatile software-defined {HPC} and cloud clusters on Alps supercomputer
for diverse workflows},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {37},
number = {3-4},
pages = {288--305},
year = {2023},
url = {https://doi.org/10.1177/10943420231167811},
doi = {10.1177/10943420231167811},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijhpca/AlamGKMS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/cacm/AlamBCHLP22,
author = {Sadaf R. Alam and
Javier Bartolome and
Michele Carpen{\`{e}} and
Kalle Happonen and
Jacques{-}Charles Lafoucriere and
Dirk Pleiter},
title = {Fenix: a Pan-European federation of supercomputing and cloud e-infrastructure
services},
journal = {Commun. {ACM}},
volume = {65},
number = {4},
pages = {46--47},
year = {2022},
url = {https://doi.org/10.1145/3511802},
doi = {10.1145/3511802},
timestamp = {Wed, 25 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/cacm/AlamBCHLP22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tpds/AlamMN22,
author = {Sadaf R. Alam and
Lois Curfman McInnes and
Kengo Nakajima},
title = {{IEEE} Special Issue on Innovative R{\&}D Toward the Exascale
Era},
journal = {{IEEE} Trans. Parallel Distributed Syst.},
volume = {33},
number = {4},
pages = {736--738},
year = {2022},
url = {https://doi.org/10.1109/TPDS.2021.3109651},
doi = {10.1109/TPDS.2021.3109651},
timestamp = {Wed, 20 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tpds/AlamMN22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/sc/2022,
editor = {Felix Wolf and
Sameer Shende and
Candace Culhane and
Sadaf R. Alam and
Heike Jagode},
title = {{SC22:} International Conference for High Performance Computing, Networking,
Storage and Analysis, Dallas, TX, USA, November 13-18, 2022},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/SC41404.2022},
doi = {10.1109/SC41404.2022},
isbn = {978-1-6654-5444-5},
timestamp = {Wed, 24 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sc/2022.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/AlamGKM21,
author = {Sadaf R. Alam and
Miguel Gila and
Mark Klein and
Maxime Martinasso},
title = {Multi-tenancy Management and Zero Downtime Upgrades using Cray-HPE
Shasta Supercomputers},
booktitle = {2021 {SC} Workshops Supplementary Proceedings, {SC} Workshops Supplementary
Proceedings 2021, St. Louis, MO, USA, November 14-19, 2021},
pages = {87--94},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/SCWS55283.2021.00021},
doi = {10.1109/SCWS55283.2021.00021},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/AlamGKM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/AlamBBCCCGGFHHH20,
author = {Sadaf R. Alam and
Javier Bartolome and
Sanzio Bassini and
Michele Carpen{\`{e}} and
Mirko Cestari and
Frederic Combeau and
Sergi Girona and
Stefano Gorini and
Giuseppe Fiameni and
Bj{\"{o}}rn Hagemeier and
Thorsten Hater and
Andreas Herten and
Nikoleta Kiapidou and
Wouter Klijn and
Dorian Krause and
Jacques{-}Charles Lafoucriere and
Cerlane Leong and
Thomas Leibovici and
Thomas Lippert and
Colin McMurtrie and
Pavel Mezentsev and
Anne Nahm and
Boris Orth and
Dirk Pleiter and
Thomas C. Schulthess and
Benedikt von St. Vieth and
Debora Testi and
Gilles Wiber},
title = {Archival Data Repository Services to Enable {HPC} and Cloud Workflows
in a Federated Research e-Infrastructure},
booktitle = {{IEEE/ACM} International Workshop on Interoperability of Supercomputing
and Cloud Technologies, SuperCompCloud@SC 2020, Atlanta, GA, USA,
November 11, 2020},
pages = {39--44},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/SuperCompCloud51944.2020.00012},
doi = {10.1109/SUPERCOMPCLOUD51944.2020.00012},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/sc/AlamBBCCCGGFHHH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smc2/AlamKBALWS20,
author = {Sadaf R. Alam and
Mark Klein and
Mauro Bianco and
Roberto Aielli and
Xavier Lapillonne and
Andre Walser and
Thomas C. Schulthess},
editor = {Jeffrey Nichols and
Becky Verastegui and
Arthur Barney Maccabe and
Oscar R. Hernandez and
Suzanne Parete{-}Koon and
Theresa Ahearn},
title = {Software Defined Infrastructure for Operational Numerical Weather
Prediction},
booktitle = {Driving Scientific and Engineering Discoveries Through the Convergence
of HPC, Big Data and {AI} - 17th Smoky Mountains Computational Sciences
and Engineering Conference, {SMC} 2020, Oak Ridge, TN, USA, August
26-28, 2020, Revised Selected Papers},
series = {Communications in Computer and Information Science},
volume = {1315},
pages = {303--317},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-63393-6\_20},
doi = {10.1007/978-3-030-63393-6\_20},
timestamp = {Sun, 26 Nov 2023 00:57:51 +0100},
biburl = {https://dblp.org/rec/conf/smc2/AlamKBALWS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/braincomp/AlamBBCCCGGFHHK19,
author = {Sadaf R. Alam and
Javier Bartolome and
Sanzio Bassini and
Michele Carpen{\`{e}} and
Mirko Cestari and
Frederic Combeau and
Sergi Girona and
Stefano Gorini and
Giuseppe Fiameni and
Bj{\"{o}}rn Hagemeier and
Andreas Herten and
Nikoleta Kiapidou and
Wouter Klijn and
Dorian Krause and
Jacques{-}Charles Lafoucriere and
Cerlane Leong and
Thomas Leibovici and
Thomas Lippert and
Colin McMurtrie and
Pavel Mezentsev and
Anne Nahm and
Boris Orth and
Dirk Pleiter and
Thomas C. Schulthess and
Benedikt von St. Vieth and
Debora Testi and
Gilles Wiber},
editor = {Katrin Amunts and
Lucio Grandinetti and
Thomas Lippert and
Nicolai Petkov},
title = {Fenix: Distributed e-Infrastructure Services for {EBRAINS}},
booktitle = {Brain-Inspired Computing - 4th International Workshop, BrainComp 2019,
Cetraro, Italy, July 15-19, 2019, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {12339},
pages = {81--89},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-82427-3\_6},
doi = {10.1007/978-3-030-82427-3\_6},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/braincomp/AlamBBCCCGGFHHK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/KleinMLA19,
author = {Mark Klein and
Maxime Martinasso and
Siew Hoon Leong and
Sadaf R. Alam},
editor = {Guido Juckeland and
Sunita Chandrasekaran},
title = {Interactive Supercomputing for Experimental Data-Driven Workflows},
booktitle = {Tools and Techniques for High Performance Computing - Selected Workshops,
HUST, {SE-HER} and WIHPC, Held in Conjunction with {SC} 2019, Denver,
CO, USA, November 17-18, 2019, Revised Selected Papers},
series = {Communications in Computer and Information Science},
volume = {1190},
pages = {164--178},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-44728-1\_10},
doi = {10.1007/978-3-030-44728-1\_10},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/KleinMLA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/supercomputer/2019w,
editor = {Mich{\`{e}}le Weiland and
Guido Juckeland and
Sadaf R. Alam and
Heike Jagode},
title = {High Performance Computing - {ISC} High Performance 2019 International
Workshops, Frankfurt, Germany, June 16-20, 2019, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {11887},
publisher = {Springer},
year = {2019},
url = {https://doi.org/10.1007/978-3-030-34356-9},
doi = {10.1007/978-3-030-34356-9},
isbn = {978-3-030-34355-2},
timestamp = {Wed, 11 Dec 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/supercomputer/2019w.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/MartinassoGBAMS18,
author = {Maxime Martinasso and
Miguel Gila and
Mauro Bianco and
Sadaf R. Alam and
Colin McMurtrie and
Thomas C. Schulthess},
title = {RM-replay: a high-fidelity tuning, optimization and exploration tool
for resource management},
booktitle = {Proceedings of the International Conference for High Performance Computing,
Networking, Storage, and Analysis, {SC} 2018, Dallas, TX, USA, November
11-16, 2018},
pages = {25:1--25:13},
publisher = {{IEEE} / {ACM}},
year = {2018},
url = {http://dl.acm.org/citation.cfm?id=3291690},
timestamp = {Mon, 12 Nov 2018 09:05:15 +0100},
biburl = {https://dblp.org/rec/conf/sc/MartinassoGBAMS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/supercomputer/2018w,
editor = {Rio Yokota and
Mich{\`{e}}le Weiland and
John Shalf and
Sadaf R. Alam},
title = {High Performance Computing - {ISC} High Performance 2018 International
Workshops, Frankfurt/Main, Germany, June 28, 2018, Revised Selected
Papers},
series = {Lecture Notes in Computer Science},
volume = {11203},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-02465-9},
doi = {10.1007/978-3-030-02465-9},
isbn = {978-3-030-02464-2},
timestamp = {Tue, 14 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/supercomputer/2018w.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/middleware/Alam17,
author = {Sadaf R. Alam},
editor = {Parisa Jalili Marandi and
Alessandro Margara},
title = {Abstractions for supercomputing platforms to facilitate consolidation
of services: poster},
booktitle = {Proceedings of the 18th {ACM/IFIP/USENIX} Middleware Conference: Posters
and Demos, Las Vegas, NV, USA, December 11 - 15, 2017},
pages = {9--10},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3155016.3155026},
doi = {10.1145/3155016.3155026},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/middleware/Alam17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/MartinassoKASH16,
author = {Maxime Martinasso and
Grzegorz Kwasniewski and
Sadaf R. Alam and
Thomas C. Schulthess and
Torsten Hoefler},
editor = {John West and
Cherri M. Pancake},
title = {A PCIe congestion-aware performance model for densely populated accelerator
servers},
booktitle = {Proceedings of the International Conference for High Performance Computing,
Networking, Storage and Analysis, {SC} 2016, Salt Lake City, UT, USA,
November 13-18, 2016},
pages = {739--749},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/SC.2016.62},
doi = {10.1109/SC.2016.62},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/MartinassoKASH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/AgarwalHPRAC13,
author = {Pratul K. Agarwal and
Scott S. Hampton and
Jeffrey D. Poznanovic and
Arvind Ramanathan and
Sadaf R. Alam and
Paul S. Crozier},
title = {Performance modeling of microsecond scale biological molecular dynamics
simulations on heterogeneous architectures},
journal = {Concurr. Comput. Pract. Exp.},
volume = {25},
number = {10},
pages = {1356--1375},
year = {2013},
url = {https://doi.org/10.1002/cpe.2943},
doi = {10.1002/CPE.2943},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/concurrency/AgarwalHPRAC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ibmrd/AlamBBCFHKLMMPSSW13,
author = {Sadaf R. Alam and
Constantine Bekas and
Hans Boettiger and
Alessandro Curioni and
Gilles Fourestey and
Willi Homberg and
Michael Knobloch and
Teodoro Laino and
Thilo Maurer and
Bernd Mohr and
Dirk Pleiter and
Arwed Schiller and
Thomas C. Schulthess and
Val{\'{e}}ry Weber},
title = {Early experiences with scientific applications on the {IBM} Blue Gene/Q
supercomputer},
journal = {{IBM} J. Res. Dev.},
volume = {57},
number = {1/2},
pages = {14},
year = {2013},
url = {https://doi.org/10.1147/JRD.2012.2234331},
doi = {10.1147/JRD.2012.2234331},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ibmrd/AlamBBCFHKLMMPSSW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ccgrid/PenaA13,
author = {Antonio J. Pe{\~{n}}a and
Sadaf R. Alam},
title = {Evaluation of Inter- and Intra-node Data Transfer Efficiencies between
{GPU} Devices and their Impact on Scalable Applications},
booktitle = {13th {IEEE/ACM} International Symposium on Cluster, Cloud, and Grid
Computing, CCGrid 2013, Delft, Netherlands, May 13-16, 2013},
pages = {144--151},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/CCGrid.2013.15},
doi = {10.1109/CCGRID.2013.15},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ccgrid/PenaA13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigmetrics/TineoAS12,
author = {Adrian Tineo and
Sadaf R. Alam and
Thomas C. Schulthess},
title = {Towards autotuning by alternating communication methods},
journal = {{SIGMETRICS} Perform. Evaluation Rev.},
volume = {40},
number = {2},
pages = {80--85},
year = {2012},
url = {https://doi.org/10.1145/2381056.2381075},
doi = {10.1145/2381056.2381075},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sigmetrics/TineoAS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iwomp/AlamFVGGD12,
author = {Sadaf R. Alam and
Gilles Fourestey and
Brice Videau and
Luigi Genovese and
Stefan Goedecker and
Nazim Dugan},
editor = {Barbara M. Chapman and
Federico Massaioli and
Matthias S. M{\"{u}}ller and
Marco Rorro},
title = {Overlapping Computations with Communications and {I/O} Explicitly
Using OpenMP Based Heterogeneous Threading Models},
booktitle = {OpenMP in a Heterogeneous World - 8th International Workshop on OpenMP,
{IWOMP} 2012, Rome, Italy, June 11-13, 2012. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {7312},
pages = {267--270},
publisher = {Springer},
year = {2012},
url = {https://doi.org/10.1007/978-3-642-30961-8\_23},
doi = {10.1007/978-3-642-30961-8\_23},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/iwomp/AlamFVGGD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cf/NallamuthuSHAA10,
author = {Ananth Nallamuthu and
Melissa C. Smith and
Scott S. Hampton and
Pratul K. Agarwal and
Sadaf R. Alam},
editor = {Nancy M. Amato and
Hubertus Franke and
Paul H. J. Kelly},
title = {Energy efficient biomolecular simulations with FPGA-based reconfigurable
computing},
booktitle = {Proceedings of the 7th Conference on Computing Frontiers, 2010, Bertinoro,
Italy, May 17-19, 2010},
pages = {83--84},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1787275.1787294},
doi = {10.1145/1787275.1787294},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cf/NallamuthuSHAA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ieeehpcs/HamptonAAC10,
author = {Scott S. Hampton and
Pratul K. Agarwal and
Sadaf R. Alam and
Paul S. Crozier},
editor = {Waleed W. Smari and
John P. McIntire},
title = {Towards microsecond biological molecular dynamics simulations on hybrid
processors},
booktitle = {Proceedings of the 2010 International Conference on High Performance
Computing {\&} Simulation, {HPCS} 2010, June 28 - July 2, 2010,
Caen, France},
pages = {98--107},
publisher = {{IEEE}},
year = {2010},
url = {https://doi.org/10.1109/HPCS.2010.5547149},
doi = {10.1109/HPCS.2010.5547149},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ieeehpcs/HamptonAAC10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/HamptonACA10,
author = {Scott S. Hampton and
Sadaf R. Alam and
Paul S. Crozier and
Pratul K. Agarwal},
title = {Optimal Utilization of Heterogeneous Resources for Biomolecular Simulations},
booktitle = {Conference on High Performance Computing Networking, Storage and Analysis,
{SC} 2010, New Orleans, LA, USA, November 13-19, 2010},
pages = {1--11},
publisher = {{IEEE}},
year = {2010},
url = {https://doi.org/10.1109/SC.2010.37},
doi = {10.1109/SC.2010.37},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/HamptonACA10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/europar/AlamBJKPS09,
author = {Sadaf R. Alam and
Richard F. Barrett and
Heike Jagode and
Jeffery A. Kuehn and
Stephen W. Poole and
Ramanan Sankaran},
editor = {Henk J. Sips and
Dick H. J. Epema and
Hai{-}Xiang Lin},
title = {Impact of Quad-Core Cray {XT4} System and Software Stack on Scientific
Computation},
booktitle = {Euro-Par 2009 Parallel Processing, 15th International Euro-Par Conference,
Delft, The Netherlands, August 25-28, 2009. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5704},
pages = {334--344},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-03869-3\_33},
doi = {10.1007/978-3-642-03869-3\_33},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/europar/AlamBJKPS09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/eurosys/TikotekarOAVNES09,
author = {Anand Tikotekar and
Hong Ong and
Sadaf R. Alam and
Geoffroy Vall{\'{e}}e and
Thomas J. Naughton and
Christian Engelmann and
Stephen L. Scott},
editor = {Stephen L. Scott and
Geoffroy Vall{\'{e}}e},
title = {Performance comparison of two virtual machine scenarios using an {HPC}
application: a case study using molecular dynamics simulations},
booktitle = {Proceedings of the 3rd {ACM} Workshop on System-level Virtualization
for High Performance Computing, HPCVirt '09, Nuremburg, Germany, March
31, 2009},
pages = {33--40},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1519138.1519143},
doi = {10.1145/1519138.1519143},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/eurosys/TikotekarOAVNES09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/JagodeDAVSM09,
author = {Heike Jagode and
Jack J. Dongarra and
Sadaf R. Alam and
Jeffrey S. Vetter and
Wyatt Spear and
Allen D. Malony},
editor = {Gabrielle Allen and
Jaroslaw Nabrzyski and
Edward Seidel and
G. Dick van Albada and
Jack J. Dongarra and
Peter M. A. Sloot},
title = {A Holistic Approach for Performance Measurement and Analysis for Petascale
Applications},
booktitle = {Computational Science - {ICCS} 2009, 9th International Conference,
Baton Rouge, LA, USA, May 25-27, 2009, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {5545},
pages = {686--695},
publisher = {Springer},
year = {2009},
url = {https://doi.org/10.1007/978-3-642-01973-9\_77},
doi = {10.1007/978-3-642-01973-9\_77},
timestamp = {Tue, 29 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iccS/JagodeDAVSM09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpp/AlamBKP09,
author = {Sadaf R. Alam and
Richard F. Barrett and
Jeffery A. Kuehn and
Steve Poole},
title = {Performance Characterization of a Hierarchical {MPI} Implementation
on Large-scale Distributed-memory Platforms},
booktitle = {{ICPP} 2009, International Conference on Parallel Processing, Vienna,
Austria, 22-25 September 2009},
pages = {132--139},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/ICPP.2009.51},
doi = {10.1109/ICPP.2009.51},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icpp/AlamBKP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/AlamBKP09,
author = {Sadaf R. Alam and
Richard F. Barrett and
Jeffery A. Kuehn and
Stephen W. Poole},
title = {Performance analysis and projections for Petascale applications on
Cray {XT} series systems},
booktitle = {23rd {IEEE} International Symposium on Parallel and Distributed Processing,
{IPDPS} 2009, Rome, Italy, May 23-29, 2009},
pages = {1--8},
publisher = {{IEEE}},
year = {2009},
url = {https://doi.org/10.1109/IPDPS.2009.5161097},
doi = {10.1109/IPDPS.2009.5161097},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/AlamBKP09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/tapia/DeFlumereA09,
author = {Ashley M. DeFlumere and
Sadaf R. Alam},
editor = {Nina M. Berry},
title = {Exploring multi-core limitations through comparison of contemporary
systems},
booktitle = {Proceedings of the Richard Tapia Celebration of Diversity in Computing
Conference 2009: Intellect, Initiatives, Insight, and Innovations,
Portland, Oregon, USA, April 1-4, 2009},
pages = {75--80},
publisher = {{ACM}},
year = {2009},
url = {https://doi.org/10.1145/1565799.1565817},
doi = {10.1145/1565799.1565817},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/tapia/DeFlumereA09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ac/DongarraGHLLLMSVYACCCKMT08,
author = {Jack J. Dongarra and
Robert B. Graybill and
William J. Harrod and
Robert F. Lucas and
Ewing L. Lusk and
Piotr Luszczek and
Janice McMahon and
Allan Snavely and
Jeffrey S. Vetter and
Katherine A. Yelick and
Sadaf R. Alam and
Roy L. Campbell and
Laura Carrington and
Tzu{-}Yi Chen and
Omid Khalili and
Jeremy S. Meredith and
Mustafa M. Tikir},
title = {DARPA's {HPCS} Program- History, Models, Tools, Languages},
journal = {Adv. Comput.},
volume = {72},
pages = {1--100},
year = {2008},
timestamp = {Thu, 02 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ac/DongarraGHLLLMSVYACCCKMT08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijhpca/AlamBFKMMRVW08,
author = {Sadaf R. Alam and
Richard F. Barrett and
Mark R. Fahey and
Jeffery A. Kuehn and
O. E. Bronson Messer and
Richard Tran Mills and
Philip C. Roth and
Jeffrey S. Vetter and
Patrick H. Worley},
title = {An Evaluation of the Oak Ridge National Laboratory Cray {XT3}},
journal = {Int. J. High Perform. Comput. Appl.},
volume = {22},
number = {1},
pages = {52--80},
year = {2008},
url = {https://doi.org/10.1177/1094342007085019},
doi = {10.1177/1094342007085019},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijhpca/AlamBFKMMRVW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pc/AlamAV08,
author = {Sadaf R. Alam and
Pratul K. Agarwal and
Jeffrey S. Vetter},
title = {Performance characteristics of biomolecular simulations on high-end
systems with multi-core processors},
journal = {Parallel Comput.},
volume = {34},
number = {11},
pages = {640--651},
year = {2008},
url = {https://doi.org/10.1016/j.parco.2008.05.003},
doi = {10.1016/J.PARCO.2008.05.003},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/pc/AlamAV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hipc/AlamAHO08,
author = {Sadaf R. Alam and
Pratul K. Agarwal and
Scott S. Hampton and
Hong Ong},
editor = {P. Sadayappan and
Manish Parashar and
Ramamurthy Badrinath and
Viktor K. Prasanna},
title = {Experimental Evaluation of Molecular Dynamics Simulations on Multi-core
Systems},
booktitle = {High Performance Computing - HiPC 2008, 15th International Conference,
Bangalore, India, December 17-20, 2008. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {5374},
pages = {131--141},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-540-89894-8\_15},
doi = {10.1007/978-3-540-89894-8\_15},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/hipc/AlamAHO08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/AlamAHOV08,
author = {Sadaf R. Alam and
Pratul K. Agarwal and
Scott S. Hampton and
Hong Ong and
Jeffrey S. Vetter},
title = {Impact of multicores on large-scale molecular dynamics simulations},
booktitle = {22nd {IEEE} International Symposium on Parallel and Distributed Processing,
{IPDPS} 2008, Miami, Florida USA, April 14-18, 2008},
pages = {1--7},
publisher = {{IEEE}},
year = {2008},
url = {https://doi.org/10.1109/IPDPS.2008.4536181},
doi = {10.1109/IPDPS.2008.4536181},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/AlamAHOV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sbac-pad/LivelyTAV08,
author = {Charles W. Lively and
Valerie E. Taylor and
Sadaf R. Alam and
Jeffrey S. Vetter},
editor = {Edson Norberto C{\'{a}}cares and
Walfredo Cirne and
Viktor K. Prasanna},
title = {A Methodology for Developing High Fidelity Communication Models for
Large-Scale Applications Targeted on Multicore Systems},
booktitle = {20th International Symposium on Computer Architecture and High Performance
Computing, {SBAC-PAD} 2008, October 29 - November 1, 2008, Campo Grande,
MS, Brazil},
pages = {55--62},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/SBAC-PAD.2008.27},
doi = {10.1109/SBAC-PAD.2008.27},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sbac-pad/LivelyTAV08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/AlamBBFKMRRSVWY08,
author = {Sadaf R. Alam and
Richard F. Barrett and
M. Bast and
Mark R. Fahey and
Jeffery A. Kuehn and
Collin McCurdy and
James H. Rogers and
Philip C. Roth and
Ramanan Sankaran and
Jeffrey S. Vetter and
Patrick H. Worley and
Weikuan Yu},
title = {Early evaluation of {IBM} BlueGene/P},
booktitle = {Proceedings of the {ACM/IEEE} Conference on High Performance Computing,
{SC} 2008, November 15-21, 2008, Austin, Texas, {USA}},
pages = {23},
publisher = {{IEEE/ACM}},
year = {2008},
url = {https://doi.org/10.1109/SC.2008.5214725},
doi = {10.1109/SC.2008.5214725},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/sc/AlamBBFKMRRSVWY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/computer/AlamASVC07,
author = {Sadaf R. Alam and
Pratul K. Agarwal and
Melissa C. Smith and
Jeffrey S. Vetter and
David Caliga},
title = {Using {FPGA} Devices to Accelerate Biomolecular Simulations},
journal = {Computer},
volume = {40},
number = {3},
pages = {66--73},
year = {2007},
url = {https://doi.org/10.1109/MC.2007.108},
doi = {10.1109/MC.2007.108},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/computer/AlamASVC07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/scpe/AlamAVS07,
author = {Sadaf R. Alam and
Pratul K. Agarwal and
Jeffrey S. Vetter and
Melissa C. Smith},
title = {Throughput Improvement of Molecular Dynamics Simulations Using Reconfigurable
Computing},
journal = {Scalable Comput. Pract. Exp.},
volume = {8},
number = {4},
year = {2007},
url = {http://www.scpe.org/index.php/scpe/article/view/434},
timestamp = {Wed, 17 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/scpe/AlamAVS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/asap/AlamVS07,
author = {Sadaf R. Alam and
Jeffrey S. Vetter and
Melissa C. Smith},
title = {An Application Specific Memory Characterization Technique for Co-processor
Accelerators},
booktitle = {{IEEE} International Conference on Application-Specific Systems, Architectures
and Processors, {ASAP} 2007, Montr{\'{e}}al, Qu{\'{e}}bec,
Canada, July 8-11, 2007},
pages = {353--358},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/ASAP.2007.4459289},
doi = {10.1109/ASAP.2007.4459289},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/asap/AlamVS07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/AlamBV07,
author = {Sadaf R. Alam and
Nikhil Bhatia and
Jeffrey S. Vetter},
title = {Sensitivity Analysis of Biomolecular Simulations using Symbolic Models},
booktitle = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics
and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical
School, Boston, MA, {USA}},
pages = {294--300},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/BIBE.2007.4375579},
doi = {10.1109/BIBE.2007.4375579},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/AlamBV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/AlamAK07,
author = {Sadaf R. Alam and
Pratul K. Agarwal and
Jeffery A. Kuehn},
title = {Performance Evaluation of a Scalable Molecular Dynamics Simulation
Framework on a Massively-Parallel System},
booktitle = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics
and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical
School, Boston, MA, {USA}},
pages = {1459--1466},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/BIBE.2007.4375777},
doi = {10.1109/BIBE.2007.4375777},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/AlamAK07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cluster/AlamMV07,
author = {Sadaf R. Alam and
Jeremy S. Meredith and
Jeffrey S. Vetter},
title = {Balancing productivity and performance on the cell broadband engine},
booktitle = {Proceedings of the 2007 {IEEE} International Conference on Cluster
Computing, 17-20 September 2007, Austin, Texas, {USA}},
pages = {149--158},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/CLUSTR.2007.4629227},
doi = {10.1109/CLUSTR.2007.4629227},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cluster/AlamMV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hpcc/AlamBV07,
author = {Sadaf R. Alam and
Nikhil Bhatia and
Jeffrey S. Vetter},
editor = {Ronald H. Perrott and
Barbara M. Chapman and
Jaspal Subhlok and
Rodrigo Fernandes de Mello and
Laurence Tianruo Yang},
title = {An Exploration of Performance Attributes for Symbolic Modeling of
Emerging Processing Devices},
booktitle = {High Performance Computing and Communications, Third International
Conference, {HPCC} 2007, Houston, USA, September 26-28, 2007, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4782},
pages = {683--694},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-3-540-75444-2\_64},
doi = {10.1007/978-3-540-75444-2\_64},
timestamp = {Tue, 14 May 2019 10:00:45 +0200},
biburl = {https://dblp.org/rec/conf/hpcc/AlamBV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/AlamA07,
author = {Sadaf R. Alam and
Pratul K. Agarwal},
title = {On the Path to Enable Multi-scale Biomolecular Simulations on PetaFLOPS
Supercomputer with Multi-core Processors},
booktitle = {21th International Parallel and Distributed Processing Symposium {(IPDPS}
2007), Proceedings, 26-30 March 2007, Long Beach, California, {USA}},
pages = {1--8},
publisher = {{IEEE}},
year = {2007},
url = {https://doi.org/10.1109/IPDPS.2007.370443},
doi = {10.1109/IPDPS.2007.370443},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/AlamA07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/MeredithAV07,
author = {Jeremy S. Meredith and
Sadaf R. Alam and
Jeffrey S. Vetter},
title = {Analysis of a Computational Biology Simulation Technique on Emerging
Processing Architectures},
booktitle = {21th International Parallel and Distributed Processing Symposium {(IPDPS}
2007), Proceedings, 26-30 March 2007, Long Beach, California, {USA}},
pages = {1--8},
publisher = {{IEEE}},
year = {2007},
url = {https://doi.org/10.1109/IPDPS.2007.370444},
doi = {10.1109/IPDPS.2007.370444},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/MeredithAV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppopp/BarrettAV07,
author = {Richard F. Barrett and
Sadaf R. Alam and
Jeffrey S. Vetter},
editor = {Katherine A. Yelick and
John M. Mellor{-}Crummey},
title = {Performance evaluation of the cray {XT3} configured with dual core
opteron processors},
booktitle = {Proceedings of the 12th {ACM} {SIGPLAN} Symposium on Principles and
Practice of Parallel Programming, {PPOPP} 2007, San Jose, California,
USA, March 14-17, 2007},
pages = {148--149},
publisher = {{ACM}},
year = {2007},
url = {https://doi.org/10.1145/1229428.1229460},
doi = {10.1145/1229428.1229460},
timestamp = {Sun, 12 Jun 2022 19:46:08 +0200},
biburl = {https://dblp.org/rec/conf/ppopp/BarrettAV07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/AlamKBLFSW07,
author = {Sadaf R. Alam and
Jeffery A. Kuehn and
Richard F. Barrett and
Jeffrey M. Larkin and
Mark R. Fahey and
Ramanan Sankaran and
Patrick H. Worley},
editor = {Becky Verastegui},
title = {Cray {XT4:} an early evaluation for petascale scientific simulation},
booktitle = {Proceedings of the {ACM/IEEE} Conference on High Performance Networking
and Computing, {SC} 2007, November 10-16, 2007, Reno, Nevada, {USA}},
pages = {39},
publisher = {{ACM} Press},
year = {2007},
url = {https://doi.org/10.1145/1362622.1362675},
doi = {10.1145/1362622.1362675},
timestamp = {Wed, 16 Oct 2019 14:14:57 +0200},
biburl = {https://dblp.org/rec/conf/sc/AlamKBLFSW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/europar/AlamV06,
author = {Sadaf R. Alam and
Jeffrey S. Vetter},
editor = {Wolfgang E. Nagel and
Wolfgang V. Walter and
Wolfgang Lehner},
title = {Hierarchical Model Validation of Symbolic Performance Models of Scientific
Kernels},
booktitle = {Euro-Par 2006, Parallel Processing, 12th International Euro-Par Conference,
Dresden, Germany, August 28 - September 1, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {4128},
pages = {65--77},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11823285\_8},
doi = {10.1007/11823285\_8},
timestamp = {Tue, 14 May 2019 10:00:46 +0200},
biburl = {https://dblp.org/rec/conf/europar/AlamV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icpp/AlamV06,
author = {Sadaf R. Alam and
Jeffrey S. Vetter},
title = {An Analysis of System Balance Requirements for Scientific Applications},
booktitle = {2006 International Conference on Parallel Processing {(ICPP} 2006),
14-18 August 2006, Columbus, Ohio, {USA}},
pages = {229--236},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/ICPP.2006.21},
doi = {10.1109/ICPP.2006.21},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icpp/AlamV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iiswc/AlamBKRV06,
author = {Sadaf R. Alam and
Richard F. Barrett and
Jeffery A. Kuehn and
Philip C. Roth and
Jeffrey S. Vetter},
title = {Characterization of Scientific Workloads on Systems with Multi-Core
Processors},
booktitle = {Proceedings of the 2006 {IEEE} International Symposium on Workload
Characterization, {IISWC} 2006, October 25-27, 2006, San Jose, California,
{USA}},
pages = {225--236},
publisher = {{IEEE} Computer Society},
year = {2006},
url = {https://doi.org/10.1109/IISWC.2006.302747},
doi = {10.1109/IISWC.2006.302747},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/iiswc/AlamBKRV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/AlamV06,
author = {Sadaf R. Alam and
Jeffrey S. Vetter},
title = {A framework to develop symbolic performance models of parallel applications},
booktitle = {20th International Parallel and Distributed Processing Symposium {(IPDPS}
2006), Proceedings, 25-29 April 2006, Rhodes Island, Greece},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/IPDPS.2006.1639625},
doi = {10.1109/IPDPS.2006.1639625},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/AlamV06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/VetterADFRW06,
author = {Jeffrey S. Vetter and
Sadaf R. Alam and
Thomas H. Dunigan Jr. and
Mark R. Fahey and
Philip C. Roth and
Patrick H. Worley},
title = {Early evaluation of the Cray {XT3}},
booktitle = {20th International Parallel and Distributed Processing Symposium {(IPDPS}
2006), Proceedings, 25-29 April 2006, Rhodes Island, Greece},
publisher = {{IEEE}},
year = {2006},
url = {https://doi.org/10.1109/IPDPS.2006.1639300},
doi = {10.1109/IPDPS.2006.1639300},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ipps/VetterADFRW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppopp/AlamVAG06,
author = {Sadaf R. Alam and
Jeffrey S. Vetter and
Pratul K. Agarwal and
Al Geist},
editor = {Josep Torrellas and
Siddhartha Chatterjee},
title = {Performance characterization of molecular dynamics techniques for
biomolecular simulations},
booktitle = {Proceedings of the {ACM} {SIGPLAN} Symposium on Principles and Practice
of Parallel Programming, {PPOPP} 2006, New York, New York, USA, March
29-31, 2006},
pages = {59--68},
publisher = {{ACM}},
year = {2006},
url = {https://doi.org/10.1145/1122971.1122983},
doi = {10.1145/1122971.1122983},
timestamp = {Sun, 12 Jun 2022 19:46:08 +0200},
biburl = {https://dblp.org/rec/conf/ppopp/AlamVAG06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iccS/AlamV05,
author = {Sadaf R. Alam and
Jeffrey S. Vetter},
editor = {Vaidy S. Sunderam and
G. Dick van Albada and
Peter M. A. Sloot and
Jack J. Dongarra},
title = {Performance and Scalability Analysis of Cray {X1} Vectorization and
Multistreaming Optimization},
booktitle = {Computational Science - {ICCS} 2005, 5th International Conference,
Atlanta, GA, USA, May 22-25, 2005, Proceedings, Part {I}},
series = {Lecture Notes in Computer Science},
volume = {3514},
pages = {304--312},
publisher = {Springer},
year = {2005},
url = {https://doi.org/10.1007/11428831\_38},
doi = {10.1007/11428831\_38},
timestamp = {Tue, 14 May 2019 10:00:48 +0200},
biburl = {https://dblp.org/rec/conf/iccS/AlamV05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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