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BibTeX records: Nima Aghaeepour
@article{DBLP:journals/npjdm/ZahedaniMVAHARTWHS24, author = {Ashkan Dehghani Zahedani and Tracey McLaughlin and Arvind Veluvali and Nima Aghaeepour and Amir Hosseinian and Saransh Agarwal and Jingyi Ruan and Shital Tripathi and Mark Woodward and Noosheen Hashemi and Michael Snyder}, title = {Correction: Digital health application integrating wearable data and behavioral patterns improves metabolic health}, journal = {npj Digit. Medicine}, volume = {7}, number = {1}, year = {2024}, url = {https://doi.org/10.1038/s41746-024-00996-y}, doi = {10.1038/S41746-024-00996-Y}, timestamp = {Fri, 08 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/npjdm/ZahedaniMVAHARTWHS24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/aaai/FlemingLHJRTBGS24, author = {Scott L. Fleming and Alejandro Lozano and William J. Haberkorn and Jenelle A. Jindal and Eduardo Pontes Reis and Rahul Thapa and Louis Blankemeier and Julian Z. Genkins and Ethan Steinberg and Ashwin Nayak and Birju S. Patel and Chia{-}Chun Chiang and Alison Callahan and Zepeng Huo and Sergios Gatidis and Scott J. Adams and Oluseyi Fayanju and Shreya J. Shah and Thomas Savage and Ethan Goh and Akshay S. Chaudhari and Nima Aghaeepour and Christopher D. Sharp and Michael A. Pfeffer and Percy Liang and Jonathan H. Chen and Keith E. Morse and Emma P. Brunskill and Jason A. Fries and Nigam H. Shah}, editor = {Michael J. Wooldridge and Jennifer G. Dy and Sriraam Natarajan}, title = {MedAlign: {A} Clinician-Generated Dataset for Instruction Following with Electronic Medical Records}, booktitle = {Thirty-Eighth {AAAI} Conference on Artificial Intelligence, {AAAI} 2024, Thirty-Sixth Conference on Innovative Applications of Artificial Intelligence, {IAAI} 2024, Fourteenth Symposium on Educational Advances in Artificial Intelligence, {EAAI} 2014, February 20-27, 2024, Vancouver, Canada}, pages = {22021--22030}, publisher = {{AAAI} Press}, year = {2024}, url = {https://doi.org/10.1609/aaai.v38i20.30205}, doi = {10.1609/AAAI.V38I20.30205}, timestamp = {Tue, 02 Apr 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/aaai/FlemingLHJRTBGS24.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2401-01620, author = {Philip Chung and Christine T. Fong and Andrew M. Walters and Nima Aghaeepour and Meliha Yetisgen and Vikas N. O'Reilly{-}Shah}, title = {Large Language Model Capabilities in Perioperative Risk Prediction and Prognostication}, journal = {CoRR}, volume = {abs/2401.01620}, year = {2024}, url = {https://doi.org/10.48550/arXiv.2401.01620}, doi = {10.48550/ARXIV.2401.01620}, eprinttype = {arXiv}, eprint = {2401.01620}, timestamp = {Tue, 23 Jan 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/corr/abs-2401-01620.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ncs/0003NESFBBCSCFF23, author = {Martin Becker and Huda Nassar and Camilo Espinosa and Ina A. Stelzer and Dorien Feyaerts and Elo{\"{\i}}se Berson and Neda Hajiakhoond Bidoki and Alan L. Chang and Geetha Saarunya and Anthony Culos and Davide De Francesco and Ramin Fallahzadeh and Qun Liu and Yeasul Kim and Ivana Maric and Samson Mataraso and Seyedeh Neelufar Payrovnaziri and Thanaphong Phongpreecha and Neal G. Ravindra and Natalie Stanley and Sayane Shome and Yuqi Tan and Melan Thuraiappah and Maria Xenochristou and Lei Xue and Gary M. Shaw and David K. Stevenson and Martin S. Angst and Brice Gaudilliere and Nima Aghaeepour}, title = {Large-scale correlation network construction for unraveling the coordination of complex biological systems}, journal = {Nat. Comput. Sci.}, volume = {3}, number = {4}, pages = {346--359}, year = {2023}, url = {https://doi.org/10.1038/s43588-023-00429-y}, doi = {10.1038/S43588-023-00429-Y}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ncs/0003NESFBBCSCFF23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/npjdm/RavindraEBPZBCSMFMSTXGASHSEA23, author = {Neal G. Ravindra and Camilo Espinosa and Elo{\"{\i}}se Berson and Thanaphong Phongpreecha and Peinan Zhao and Martin Becker and Alan L. Chang and Sayane Shome and Ivana Maric and Davide De Francesco and Samson Mataraso and Geetha Saarunya and Melan Thuraiappah and Lei Xue and Brice Gaudilliere and Martin S. Angst and Gary M. Shaw and Erik D. Herzog and David K. Stevenson and Sarah K. England and Nima Aghaeepour}, title = {Deep representation learning identifies associations between physical activity and sleep patterns during pregnancy and prematurity}, journal = {npj Digit. Medicine}, volume = {6}, year = {2023}, url = {https://doi.org/10.1038/s41746-023-00911-x}, doi = {10.1038/S41746-023-00911-X}, timestamp = {Sat, 08 Jun 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/npjdm/RavindraEBPZBCSMFMSTXGASHSEA23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/npjdm/ZahedaniVMAHARTWHS23, author = {Ashkan Dehghani Zahedani and Arvind Veluvali and Tracey McLaughlin and Nima Aghaeepour and Amir Hosseinian and Saransh Agarwal and Jingyi Ruan and Shital Tripathi and Mark Woodward and Noosheen Hashemi and Michael Snyder}, title = {Digital health application integrating wearable data and behavioral patterns improves metabolic health}, journal = {npj Digit. Medicine}, volume = {6}, year = {2023}, url = {https://doi.org/10.1038/s41746-023-00956-y}, doi = {10.1038/S41746-023-00956-Y}, timestamp = {Fri, 08 Mar 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/npjdm/ZahedaniVMAHARTWHS23.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2308-14089, author = {Scott L. Fleming and Alejandro Lozano and William J. Haberkorn and Jenelle A. Jindal and Eduardo Pontes Reis and Rahul Thapa and Louis Blankemeier and Julian Z. Genkins and Ethan Steinberg and Ashwin Nayak and Birju S. Patel and Chia{-}Chun Chiang and Alison Callahan and Zepeng Huo and Sergios Gatidis and Scott J. Adams and Oluseyi Fayanju and Shreya J. Shah and Thomas Savage and Ethan Goh and Akshay S. Chaudhari and Nima Aghaeepour and Christopher D. Sharp and Michael A. Pfeffer and Percy Liang and Jonathan H. Chen and Keith E. Morse and Emma P. Brunskill and Jason A. Fries and Nigam H. Shah}, title = {MedAlign: {A} Clinician-Generated Dataset for Instruction Following with Electronic Medical Records}, journal = {CoRR}, volume = {abs/2308.14089}, year = {2023}, url = {https://doi.org/10.48550/arXiv.2308.14089}, doi = {10.48550/ARXIV.2308.14089}, eprinttype = {arXiv}, eprint = {2308.14089}, timestamp = {Tue, 07 May 2024 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2308-14089.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/patterns/MaricCMSFHTSWTE22, author = {Ivana Maric and K{\'{e}}vin Contrepois and Mira N. Moufarrej and Ina A. Stelzer and Dorien Feyaerts and Xiaoyuan Han and Andy Tang and Natalie Stanley and Ronald J. Wong and Gavin M. Traber and Mathew Ellenberger and Alan L. Chang and Ramin Fallahzadeh and Huda Nassar and Martin Becker and Maria Xenochristou and Camilo Espinosa and Davide De Francesco and Mohammad S. Ghaemi and Elizabeth K. Costello and Anthony Culos and Xuefeng Bruce Ling and Karl G. Sylvester and Gary L. Darmstadt and Virginia D. Winn and Gary M. Shaw and David A. Relman and Stephen R. Quake and Martin S. Angst and Michael P. Snyder and David K. Stevenson and Brice Gaudilliere and Nima Aghaeepour}, title = {Early prediction and longitudinal modeling of preeclampsia from multiomics}, journal = {Patterns}, volume = {3}, number = {12}, pages = {100655}, year = {2022}, url = {https://doi.org/10.1016/j.patter.2022.100655}, doi = {10.1016/J.PATTER.2022.100655}, timestamp = {Mon, 05 Feb 2024 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/patterns/MaricCMSFHTSWTE22.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/access/RashtianTRSA21, author = {Hootan Rashtian and Solmaz Shariat Torbaghan and Salar Rahili and Michael P. Snyder and Nima Aghaeepour}, title = {Heart Rate and {CGM} Feature Representation Diabetes Detection From Heart Rate: Learning Joint Features of Heart Rate and Continuous Glucose Monitors Yields Better Representations}, journal = {{IEEE} Access}, volume = {9}, pages = {83234--83240}, year = {2021}, url = {https://doi.org/10.1109/ACCESS.2021.3085544}, doi = {10.1109/ACCESS.2021.3085544}, timestamp = {Tue, 13 Jul 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/access/RashtianTRSA21.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/natmi/CulosTSBGMFTNEX20, author = {Anthony Culos and Amy Tsai and Natalie Stanley and Martin Becker and Mohammad Sajjad Ghaemi and David Mcilwain and Ramin Fallahzadeh and Athena Tanada and Huda Nassar and Camilo Espinosa and Maria Xenochristou and Edward Ganio and Laura Peterson and Xiaoyuan Han and Ina A. Stelzer and Kazuo Ando and Dyani Gaudilliere and Thanaphong Phongpreecha and Ivana Maric and Alan L. Chang and Gary M. Shaw and David K. Stevenson and Sean Bendall and Kara L. Davis and Wendy J. Fantl and Garry P. Nolan and Trevor Hastie and Robert Tibshirani and Martin S. Angst and Brice Gaudilliere and Nima Aghaeepour}, title = {Integration of mechanistic immunological knowledge into a machine learning pipeline improves predictions}, journal = {Nat. Mach. Intell.}, volume = {2}, number = {10}, pages = {619--628}, year = {2020}, url = {https://doi.org/10.1038/s42256-020-00232-8}, doi = {10.1038/S42256-020-00232-8}, timestamp = {Sun, 02 Oct 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/natmi/CulosTSBGMFTNEX20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/corr/abs-2006-01395, author = {J. Kenneth Tay and Nima Aghaeepour and Trevor Hastie and Robert Tibshirani}, title = {Feature-weighted elastic net: using "features of features" for better prediction}, journal = {CoRR}, volume = {abs/2006.01395}, year = {2020}, url = {https://arxiv.org/abs/2006.01395}, eprinttype = {arXiv}, eprint = {2006.01395}, timestamp = {Tue, 09 Jun 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/corr/abs-2006-01395.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/GhaemiDCCNLLRMR19, author = {Mohammad Sajjad Ghaemi and Daniel B. DiGiulio and K{\'{e}}vin Contrepois and Benjamin J. Callahan and Thuy T. M. Ngo and Brittany Lee{-}McMullen and Benoit Lehallier and Anna Robaczewska and David Mcilwain and Yael Rosenberg{-}Hasson and Ronald J. Wong and Cecele Quaintance and Anthony Culos and Natalie Stanley and Athena Tanada and Amy Tsai and Dyani Gaudilliere and Edward Ganio and Xiaoyuan Han and Kazuo Ando and Leslie McNeil and Martha Tingle and Paul H. Wise and Ivana Maric and Marina Sirota and Tony Wyss{-}Coray and Virginia D. Winn and Maurice L. Druzin and Ronald Gibbs and Gary L. Darmstadt and David B. Lewis and Vahid Partovi Nia and Bruno Agard and Robert Tibshirani and Garry P. Nolan and Michael P. Snyder and David A. Relman and Stephen R. Quake and Gary M. Shaw and David K. Stevenson and Martin S. Angst and Brice Gaudilliere and Nima Aghaeepour}, title = {Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy}, journal = {Bioinform.}, volume = {35}, number = {1}, pages = {95--103}, year = {2019}, url = {https://doi.org/10.1093/bioinformatics/bty537}, doi = {10.1093/BIOINFORMATICS/BTY537}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/GhaemiDCCNLLRMR19.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AghaeepourSKBSC18, author = {Nima Aghaeepour and Erin F. Simonds and David J. H. F. Knapp and Robert V. Bruggner and Karen Sachs and Anthony Culos and Pier Federico Gherardini and Nikolay Samusik and Gabriela K. Fragiadakis and Sean Bendall and Brice Gaudilliere and Martin S. Angst and Connie J. Eaves and William A. Weiss and Wendy J. Fantl and Garry P. Nolan}, title = {GateFinder: projection-based gating strategy optimization for flow and mass cytometry}, journal = {Bioinform.}, volume = {34}, number = {23}, pages = {4131--4133}, year = {2018}, url = {https://doi.org/10.1093/bioinformatics/bty430}, doi = {10.1093/BIOINFORMATICS/BTY430}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/AghaeepourSKBSC18.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/SamusikAB17, author = {Nikolay Samusik and Nima Aghaeepour and Sean Bendall}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Marylyn D. Ritchie and Teri E. Klein}, title = {Session Introduction}, booktitle = {Biocomputing 2017: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2017}, pages = {557--563}, year = {2017}, url = {http://psb.stanford.edu/psb-online/proceedings/psb17/intro-single.pdf}, timestamp = {Thu, 12 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/SamusikAB17.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ONeillAPHKDB15, author = {Kieran O'Neill and Nima Aghaeepour and Jeremy Parker and Donna Hogge and Aly Karsan and Bakul Dalal and Ryan Remy Brinkman}, title = {Deep profiling of multitube flow cytometry data}, journal = {Bioinform.}, volume = {31}, number = {10}, pages = {1623--1631}, year = {2015}, url = {https://doi.org/10.1093/bioinformatics/btv008}, doi = {10.1093/BIOINFORMATICS/BTV008}, timestamp = {Thu, 14 Oct 2021 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/bioinformatics/ONeillAPHKDB15.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/ONeillJAHB14, author = {Kieran O'Neill and Adrin Jalali and Nima Aghaeepour and Holger H. Hoos and Ryan Remy Brinkman}, title = {Enhanced flowType/RchyOptimyx: a Bioconductor pipeline for discovery in high-dimensional cytometry data}, journal = {Bioinform.}, volume = {30}, number = {9}, pages = {1329--1330}, year = {2014}, url = {https://doi.org/10.1093/bioinformatics/btt770}, doi = {10.1093/BIOINFORMATICS/BTT770}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/ONeillJAHB14.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bmcbi/AghaeepourH13, author = {Nima Aghaeepour and Holger H. Hoos}, title = {Ensemble-based prediction of {RNA} secondary structures}, journal = {{BMC} Bioinform.}, volume = {14}, pages = {139}, year = {2013}, url = {https://doi.org/10.1186/1471-2105-14-139}, doi = {10.1186/1471-2105-14-139}, timestamp = {Sun, 15 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bmcbi/AghaeepourH13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/ploscb/ONeillASB13, author = {Kieran O'Neill and Nima Aghaeepour and Josef Spidlen and Ryan Remy Brinkman}, title = {Flow Cytometry Bioinformatics}, journal = {PLoS Comput. Biol.}, volume = {9}, number = {12}, year = {2013}, url = {https://doi.org/10.1371/journal.pcbi.1003365}, doi = {10.1371/JOURNAL.PCBI.1003365}, timestamp = {Thu, 10 Sep 2020 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/ploscb/ONeillASB13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/AghaeepourCGOZJHRB12, author = {Nima Aghaeepour and Pratip K. Chattopadhyay and Anuradha Ganesan and Kieran O'Neill and Habil Zare and Adrin Jalali and Holger H. Hoos and Mario Roederer and Ryan Remy Brinkman}, title = {Early immunologic correlates of {HIV} protection can be identified from computational analysis of complex multivariate T-cell flow cytometry assays}, journal = {Bioinform.}, volume = {28}, number = {7}, pages = {1009--1016}, year = {2012}, url = {https://doi.org/10.1093/bioinformatics/bts082}, doi = {10.1093/BIOINFORMATICS/BTS082}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/AghaeepourCGOZJHRB12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@incollection{DBLP:series/sci/KhanlooDAM09, author = {Bahman Yari Saeed Khanloo and Daryanaz Dargahi and Nima Aghaeepour and Ali Masoudi{-}Nejad}, editor = {Ajith Abraham and Aboul Ella Hassanien and Andr{\'{e}} Carlos Ponce de Leon Ferreira de Carvalho and V{\'{a}}clav Sn{\'{a}}sel}, title = {Support Vector Clustering: From Local Constraint to Global Stability}, booktitle = {Foundations of Computational Intelligence - Volume 6: Data Mining}, series = {Studies in Computational Intelligence}, volume = {206}, pages = {209--227}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-01091-0\_10}, doi = {10.1007/978-3-642-01091-0\_10}, timestamp = {Sat, 30 Sep 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/series/sci/KhanlooDAM09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/robocup/DashtiAABDDGKPS05, author = {HesamAddin Dashti and Nima Aghaeepour and Sahar Asadi and Meysam Bastani and Zahra Delafkar and Fatemeh Miri Disfani and Serveh Ghaderi and Shahin Kamali and Sepideh Pashami and Alireza Siahpirani}, editor = {Ansgar Bredenfeld and Adam Jacoff and Itsuki Noda and Yasutake Takahashi}, title = {Dynamic Positioning Based on Voronoi Cells {(DPVC)}}, booktitle = {RoboCup 2005: Robot Soccer World Cup {IX}}, series = {Lecture Notes in Computer Science}, volume = {4020}, pages = {219--229}, publisher = {Springer}, year = {2005}, url = {https://doi.org/10.1007/11780519\_20}, doi = {10.1007/11780519\_20}, timestamp = {Thu, 23 Jun 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/robocup/DashtiAABDDGKPS05.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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