BibTeX records: Pratul K. Agarwal

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@article{DBLP:journals/concurrency/AgarwalNPBHG20,
  author       = {Pratul K. Agarwal and
                  Thomas J. Naughton and
                  Byung H. Park and
                  David E. Bernholdt and
                  Joshua Hursey and
                  Al Geist},
  title        = {Application health monitoring for extreme-scale resiliency using cooperative
                  fault management},
  journal      = {Concurr. Comput. Pract. Exp.},
  volume       = {32},
  number       = {2},
  year         = {2020},
  url          = {https://doi.org/10.1002/cpe.5449},
  doi          = {10.1002/CPE.5449},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/concurrency/AgarwalNPBHG20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/concurrency/AgarwalHPRAC13,
  author       = {Pratul K. Agarwal and
                  Scott S. Hampton and
                  Jeffrey D. Poznanovic and
                  Arvind Ramanathan and
                  Sadaf R. Alam and
                  Paul S. Crozier},
  title        = {Performance modeling of microsecond scale biological molecular dynamics
                  simulations on heterogeneous architectures},
  journal      = {Concurr. Comput. Pract. Exp.},
  volume       = {25},
  number       = {10},
  pages        = {1356--1375},
  year         = {2013},
  url          = {https://doi.org/10.1002/cpe.2943},
  doi          = {10.1002/CPE.2943},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/concurrency/AgarwalHPRAC13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/BurgerRSSAC12,
  author       = {Virginia M. Burger and
                  Arvind Ramanathan and
                  Andrej J. Savol and
                  Christopher B. Stanley and
                  Pratul K. Agarwal and
                  Chakra S. Chennubhotla},
  editor       = {Russ B. Altman and
                  A. Keith Dunker and
                  Lawrence Hunter and
                  Tiffany Murray and
                  Teri E. Klein},
  title        = {Quasi-Anharmonic Analysis Reveals Intermediate States in the Nuclear
                  Co-Activator Receptor Binding Domain Ensemble},
  booktitle    = {Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast,
                  Hawaii, USA, January 3-7, 2012},
  pages        = {70--81},
  publisher    = {World Scientific Publishing},
  year         = {2012},
  url          = {http://psb.stanford.edu/psb-online/proceedings/psb12/burger.pdf},
  timestamp    = {Fri, 20 Jan 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/psb/BurgerRSSAC12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SavolBARC11,
  author       = {Andrej J. Savol and
                  Virginia M. Burger and
                  Pratul K. Agarwal and
                  Arvind Ramanathan and
                  Chakra S. Chennubhotla},
  title        = {{QAARM:} quasi-anharmonic autoregressive model reveals molecular recognition
                  pathways in ubiquitin},
  journal      = {Bioinform.},
  volume       = {27},
  number       = {13},
  pages        = {52--60},
  year         = {2011},
  url          = {https://doi.org/10.1093/bioinformatics/btr248},
  doi          = {10.1093/BIOINFORMATICS/BTR248},
  timestamp    = {Fri, 20 Jan 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SavolBARC11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/policy/ParkNABGT11,
  author       = {Byung H. Park and
                  Thomas J. Naughton and
                  Pratul K. Agarwal and
                  David E. Bernholdt and
                  Al Geist and
                  Jennifer L. Tippens},
  title        = {Realization of User Level Fault Tolerant Policy Management through
                  a Holistic Approach for Fault Correlation},
  booktitle    = {{POLICY} 2011, {IEEE} International Symposium on Policies for Distributed
                  Systems and Networks, Pisa, Italy, 6-8 June 2011},
  pages        = {17--24},
  publisher    = {{IEEE} Computer Society},
  year         = {2011},
  url          = {https://doi.org/10.1109/POLICY.2011.34},
  doi          = {10.1109/POLICY.2011.34},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/policy/ParkNABGT11.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/RamanathanAKL10,
  author       = {Arvind Ramanathan and
                  Pratul K. Agarwal and
                  Maria G. Kurnikova and
                  Christopher James Langmead},
  title        = {An Online Approach for Mining Collective Behaviors from Molecular
                  Dynamics Simulations},
  journal      = {J. Comput. Biol.},
  volume       = {17},
  number       = {3},
  pages        = {309--324},
  year         = {2010},
  url          = {https://doi.org/10.1089/cmb.2009.0167},
  doi          = {10.1089/CMB.2009.0167},
  timestamp    = {Thu, 05 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/jcb/RamanathanAKL10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cf/NallamuthuSHAA10,
  author       = {Ananth Nallamuthu and
                  Melissa C. Smith and
                  Scott S. Hampton and
                  Pratul K. Agarwal and
                  Sadaf R. Alam},
  editor       = {Nancy M. Amato and
                  Hubertus Franke and
                  Paul H. J. Kelly},
  title        = {Energy efficient biomolecular simulations with FPGA-based reconfigurable
                  computing},
  booktitle    = {Proceedings of the 7th Conference on Computing Frontiers, 2010, Bertinoro,
                  Italy, May 17-19, 2010},
  pages        = {83--84},
  publisher    = {{ACM}},
  year         = {2010},
  url          = {https://doi.org/10.1145/1787275.1787294},
  doi          = {10.1145/1787275.1787294},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/cf/NallamuthuSHAA10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ieeehpcs/HamptonAAC10,
  author       = {Scott S. Hampton and
                  Pratul K. Agarwal and
                  Sadaf R. Alam and
                  Paul S. Crozier},
  editor       = {Waleed W. Smari and
                  John P. McIntire},
  title        = {Towards microsecond biological molecular dynamics simulations on hybrid
                  processors},
  booktitle    = {Proceedings of the 2010 International Conference on High Performance
                  Computing {\&} Simulation, {HPCS} 2010, June 28 - July 2, 2010,
                  Caen, France},
  pages        = {98--107},
  publisher    = {{IEEE}},
  year         = {2010},
  url          = {https://doi.org/10.1109/HPCS.2010.5547149},
  doi          = {10.1109/HPCS.2010.5547149},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/ieeehpcs/HamptonAAC10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/sc/HamptonACA10,
  author       = {Scott S. Hampton and
                  Sadaf R. Alam and
                  Paul S. Crozier and
                  Pratul K. Agarwal},
  title        = {Optimal Utilization of Heterogeneous Resources for Biomolecular Simulations},
  booktitle    = {Conference on High Performance Computing Networking, Storage and Analysis,
                  {SC} 2010, New Orleans, LA, USA, November 13-19, 2010},
  pages        = {1--11},
  publisher    = {{IEEE}},
  year         = {2010},
  url          = {https://doi.org/10.1109/SC.2010.37},
  doi          = {10.1109/SC.2010.37},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/sc/HamptonACA10.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/recomb/RamanathanAKL09,
  author       = {Arvind Ramanathan and
                  Pratul K. Agarwal and
                  Maria G. Kurnikova and
                  Christopher James Langmead},
  editor       = {Serafim Batzoglou},
  title        = {An Online Approach for Mining Collective Behaviors from Molecular
                  Dynamics Simulations},
  booktitle    = {Research in Computational Molecular Biology, 13th Annual International
                  Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5541},
  pages        = {138--154},
  publisher    = {Springer},
  year         = {2009},
  url          = {https://doi.org/10.1007/978-3-642-02008-7\_10},
  doi          = {10.1007/978-3-642-02008-7\_10},
  timestamp    = {Thu, 05 Oct 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/recomb/RamanathanAKL09.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/pc/AlamAV08,
  author       = {Sadaf R. Alam and
                  Pratul K. Agarwal and
                  Jeffrey S. Vetter},
  title        = {Performance characteristics of biomolecular simulations on high-end
                  systems with multi-core processors},
  journal      = {Parallel Comput.},
  volume       = {34},
  number       = {11},
  pages        = {640--651},
  year         = {2008},
  url          = {https://doi.org/10.1016/j.parco.2008.05.003},
  doi          = {10.1016/J.PARCO.2008.05.003},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/pc/AlamAV08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hipc/AlamAHO08,
  author       = {Sadaf R. Alam and
                  Pratul K. Agarwal and
                  Scott S. Hampton and
                  Hong Ong},
  editor       = {P. Sadayappan and
                  Manish Parashar and
                  Ramamurthy Badrinath and
                  Viktor K. Prasanna},
  title        = {Experimental Evaluation of Molecular Dynamics Simulations on Multi-core
                  Systems},
  booktitle    = {High Performance Computing - HiPC 2008, 15th International Conference,
                  Bangalore, India, December 17-20, 2008. Proceedings},
  series       = {Lecture Notes in Computer Science},
  volume       = {5374},
  pages        = {131--141},
  publisher    = {Springer},
  year         = {2008},
  url          = {https://doi.org/10.1007/978-3-540-89894-8\_15},
  doi          = {10.1007/978-3-540-89894-8\_15},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/conf/hipc/AlamAHO08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/AlamAHOV08,
  author       = {Sadaf R. Alam and
                  Pratul K. Agarwal and
                  Scott S. Hampton and
                  Hong Ong and
                  Jeffrey S. Vetter},
  title        = {Impact of multicores on large-scale molecular dynamics simulations},
  booktitle    = {22nd {IEEE} International Symposium on Parallel and Distributed Processing,
                  {IPDPS} 2008, Miami, Florida USA, April 14-18, 2008},
  pages        = {1--7},
  publisher    = {{IEEE}},
  year         = {2008},
  url          = {https://doi.org/10.1109/IPDPS.2008.4536181},
  doi          = {10.1109/IPDPS.2008.4536181},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ipps/AlamAHOV08.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/computer/AlamASVC07,
  author       = {Sadaf R. Alam and
                  Pratul K. Agarwal and
                  Melissa C. Smith and
                  Jeffrey S. Vetter and
                  David Caliga},
  title        = {Using {FPGA} Devices to Accelerate Biomolecular Simulations},
  journal      = {Computer},
  volume       = {40},
  number       = {3},
  pages        = {66--73},
  year         = {2007},
  url          = {https://doi.org/10.1109/MC.2007.108},
  doi          = {10.1109/MC.2007.108},
  timestamp    = {Sat, 09 Apr 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/computer/AlamASVC07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/scpe/AlamAVS07,
  author       = {Sadaf R. Alam and
                  Pratul K. Agarwal and
                  Jeffrey S. Vetter and
                  Melissa C. Smith},
  title        = {Throughput Improvement of Molecular Dynamics Simulations Using Reconfigurable
                  Computing},
  journal      = {Scalable Comput. Pract. Exp.},
  volume       = {8},
  number       = {4},
  year         = {2007},
  url          = {http://www.scpe.org/index.php/scpe/article/view/434},
  timestamp    = {Wed, 17 Feb 2021 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/scpe/AlamAVS07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/AlamAK07,
  author       = {Sadaf R. Alam and
                  Pratul K. Agarwal and
                  Jeffery A. Kuehn},
  title        = {Performance Evaluation of a Scalable Molecular Dynamics Simulation
                  Framework on a Massively-Parallel System},
  booktitle    = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics
                  and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical
                  School, Boston, MA, {USA}},
  pages        = {1459--1466},
  publisher    = {{IEEE} Computer Society},
  year         = {2007},
  url          = {https://doi.org/10.1109/BIBE.2007.4375777},
  doi          = {10.1109/BIBE.2007.4375777},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/bibe/AlamAK07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ipps/AlamA07,
  author       = {Sadaf R. Alam and
                  Pratul K. Agarwal},
  title        = {On the Path to Enable Multi-scale Biomolecular Simulations on PetaFLOPS
                  Supercomputer with Multi-core Processors},
  booktitle    = {21th International Parallel and Distributed Processing Symposium {(IPDPS}
                  2007), Proceedings, 26-30 March 2007, Long Beach, California, {USA}},
  pages        = {1--8},
  publisher    = {{IEEE}},
  year         = {2007},
  url          = {https://doi.org/10.1109/IPDPS.2007.370443},
  doi          = {10.1109/IPDPS.2007.370443},
  timestamp    = {Fri, 24 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/ipps/AlamA07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ppopp/AlamVAG06,
  author       = {Sadaf R. Alam and
                  Jeffrey S. Vetter and
                  Pratul K. Agarwal and
                  Al Geist},
  editor       = {Josep Torrellas and
                  Siddhartha Chatterjee},
  title        = {Performance characterization of molecular dynamics techniques for
                  biomolecular simulations},
  booktitle    = {Proceedings of the {ACM} {SIGPLAN} Symposium on Principles and Practice
                  of Parallel Programming, {PPOPP} 2006, New York, New York, USA, March
                  29-31, 2006},
  pages        = {59--68},
  publisher    = {{ACM}},
  year         = {2006},
  url          = {https://doi.org/10.1145/1122971.1122983},
  doi          = {10.1145/1122971.1122983},
  timestamp    = {Sun, 12 Jun 2022 19:46:08 +0200},
  biburl       = {https://dblp.org/rec/conf/ppopp/AlamVAG06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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