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BibTeX records: Pratul K. Agarwal
@article{DBLP:journals/concurrency/AgarwalNPBHG20, author = {Pratul K. Agarwal and Thomas J. Naughton and Byung H. Park and David E. Bernholdt and Joshua Hursey and Al Geist}, title = {Application health monitoring for extreme-scale resiliency using cooperative fault management}, journal = {Concurr. Comput. Pract. Exp.}, volume = {32}, number = {2}, year = {2020}, url = {https://doi.org/10.1002/cpe.5449}, doi = {10.1002/CPE.5449}, timestamp = {Mon, 02 Mar 2020 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/concurrency/AgarwalNPBHG20.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/concurrency/AgarwalHPRAC13, author = {Pratul K. Agarwal and Scott S. Hampton and Jeffrey D. Poznanovic and Arvind Ramanathan and Sadaf R. Alam and Paul S. Crozier}, title = {Performance modeling of microsecond scale biological molecular dynamics simulations on heterogeneous architectures}, journal = {Concurr. Comput. Pract. Exp.}, volume = {25}, number = {10}, pages = {1356--1375}, year = {2013}, url = {https://doi.org/10.1002/cpe.2943}, doi = {10.1002/CPE.2943}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/concurrency/AgarwalHPRAC13.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/psb/BurgerRSSAC12, author = {Virginia M. Burger and Arvind Ramanathan and Andrej J. Savol and Christopher B. Stanley and Pratul K. Agarwal and Chakra S. Chennubhotla}, editor = {Russ B. Altman and A. Keith Dunker and Lawrence Hunter and Tiffany Murray and Teri E. Klein}, title = {Quasi-Anharmonic Analysis Reveals Intermediate States in the Nuclear Co-Activator Receptor Binding Domain Ensemble}, booktitle = {Biocomputing 2012: Proceedings of the Pacific Symposium, Kohala Coast, Hawaii, USA, January 3-7, 2012}, pages = {70--81}, publisher = {World Scientific Publishing}, year = {2012}, url = {http://psb.stanford.edu/psb-online/proceedings/psb12/burger.pdf}, timestamp = {Fri, 20 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/psb/BurgerRSSAC12.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/bioinformatics/SavolBARC11, author = {Andrej J. Savol and Virginia M. Burger and Pratul K. Agarwal and Arvind Ramanathan and Chakra S. Chennubhotla}, title = {{QAARM:} quasi-anharmonic autoregressive model reveals molecular recognition pathways in ubiquitin}, journal = {Bioinform.}, volume = {27}, number = {13}, pages = {52--60}, year = {2011}, url = {https://doi.org/10.1093/bioinformatics/btr248}, doi = {10.1093/BIOINFORMATICS/BTR248}, timestamp = {Fri, 20 Jan 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/bioinformatics/SavolBARC11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/policy/ParkNABGT11, author = {Byung H. Park and Thomas J. Naughton and Pratul K. Agarwal and David E. Bernholdt and Al Geist and Jennifer L. Tippens}, title = {Realization of User Level Fault Tolerant Policy Management through a Holistic Approach for Fault Correlation}, booktitle = {{POLICY} 2011, {IEEE} International Symposium on Policies for Distributed Systems and Networks, Pisa, Italy, 6-8 June 2011}, pages = {17--24}, publisher = {{IEEE} Computer Society}, year = {2011}, url = {https://doi.org/10.1109/POLICY.2011.34}, doi = {10.1109/POLICY.2011.34}, timestamp = {Thu, 23 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/policy/ParkNABGT11.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/jcb/RamanathanAKL10, author = {Arvind Ramanathan and Pratul K. Agarwal and Maria G. Kurnikova and Christopher James Langmead}, title = {An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations}, journal = {J. Comput. Biol.}, volume = {17}, number = {3}, pages = {309--324}, year = {2010}, url = {https://doi.org/10.1089/cmb.2009.0167}, doi = {10.1089/CMB.2009.0167}, timestamp = {Thu, 05 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/jcb/RamanathanAKL10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/cf/NallamuthuSHAA10, author = {Ananth Nallamuthu and Melissa C. Smith and Scott S. Hampton and Pratul K. Agarwal and Sadaf R. Alam}, editor = {Nancy M. Amato and Hubertus Franke and Paul H. J. Kelly}, title = {Energy efficient biomolecular simulations with FPGA-based reconfigurable computing}, booktitle = {Proceedings of the 7th Conference on Computing Frontiers, 2010, Bertinoro, Italy, May 17-19, 2010}, pages = {83--84}, publisher = {{ACM}}, year = {2010}, url = {https://doi.org/10.1145/1787275.1787294}, doi = {10.1145/1787275.1787294}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/cf/NallamuthuSHAA10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ieeehpcs/HamptonAAC10, author = {Scott S. Hampton and Pratul K. Agarwal and Sadaf R. Alam and Paul S. Crozier}, editor = {Waleed W. Smari and John P. McIntire}, title = {Towards microsecond biological molecular dynamics simulations on hybrid processors}, booktitle = {Proceedings of the 2010 International Conference on High Performance Computing {\&} Simulation, {HPCS} 2010, June 28 - July 2, 2010, Caen, France}, pages = {98--107}, publisher = {{IEEE}}, year = {2010}, url = {https://doi.org/10.1109/HPCS.2010.5547149}, doi = {10.1109/HPCS.2010.5547149}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/ieeehpcs/HamptonAAC10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/sc/HamptonACA10, author = {Scott S. Hampton and Sadaf R. Alam and Paul S. Crozier and Pratul K. Agarwal}, title = {Optimal Utilization of Heterogeneous Resources for Biomolecular Simulations}, booktitle = {Conference on High Performance Computing Networking, Storage and Analysis, {SC} 2010, New Orleans, LA, USA, November 13-19, 2010}, pages = {1--11}, publisher = {{IEEE}}, year = {2010}, url = {https://doi.org/10.1109/SC.2010.37}, doi = {10.1109/SC.2010.37}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/sc/HamptonACA10.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/recomb/RamanathanAKL09, author = {Arvind Ramanathan and Pratul K. Agarwal and Maria G. Kurnikova and Christopher James Langmead}, editor = {Serafim Batzoglou}, title = {An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations}, booktitle = {Research in Computational Molecular Biology, 13th Annual International Conference, {RECOMB} 2009, Tucson, AZ, USA, May 18-21, 2009. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5541}, pages = {138--154}, publisher = {Springer}, year = {2009}, url = {https://doi.org/10.1007/978-3-642-02008-7\_10}, doi = {10.1007/978-3-642-02008-7\_10}, timestamp = {Thu, 05 Oct 2023 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/recomb/RamanathanAKL09.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/pc/AlamAV08, author = {Sadaf R. Alam and Pratul K. Agarwal and Jeffrey S. Vetter}, title = {Performance characteristics of biomolecular simulations on high-end systems with multi-core processors}, journal = {Parallel Comput.}, volume = {34}, number = {11}, pages = {640--651}, year = {2008}, url = {https://doi.org/10.1016/j.parco.2008.05.003}, doi = {10.1016/J.PARCO.2008.05.003}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/pc/AlamAV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/hipc/AlamAHO08, author = {Sadaf R. Alam and Pratul K. Agarwal and Scott S. Hampton and Hong Ong}, editor = {P. Sadayappan and Manish Parashar and Ramamurthy Badrinath and Viktor K. Prasanna}, title = {Experimental Evaluation of Molecular Dynamics Simulations on Multi-core Systems}, booktitle = {High Performance Computing - HiPC 2008, 15th International Conference, Bangalore, India, December 17-20, 2008. Proceedings}, series = {Lecture Notes in Computer Science}, volume = {5374}, pages = {131--141}, publisher = {Springer}, year = {2008}, url = {https://doi.org/10.1007/978-3-540-89894-8\_15}, doi = {10.1007/978-3-540-89894-8\_15}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/conf/hipc/AlamAHO08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ipps/AlamAHOV08, author = {Sadaf R. Alam and Pratul K. Agarwal and Scott S. Hampton and Hong Ong and Jeffrey S. Vetter}, title = {Impact of multicores on large-scale molecular dynamics simulations}, booktitle = {22nd {IEEE} International Symposium on Parallel and Distributed Processing, {IPDPS} 2008, Miami, Florida USA, April 14-18, 2008}, pages = {1--7}, publisher = {{IEEE}}, year = {2008}, url = {https://doi.org/10.1109/IPDPS.2008.4536181}, doi = {10.1109/IPDPS.2008.4536181}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/ipps/AlamAHOV08.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/computer/AlamASVC07, author = {Sadaf R. Alam and Pratul K. Agarwal and Melissa C. Smith and Jeffrey S. Vetter and David Caliga}, title = {Using {FPGA} Devices to Accelerate Biomolecular Simulations}, journal = {Computer}, volume = {40}, number = {3}, pages = {66--73}, year = {2007}, url = {https://doi.org/10.1109/MC.2007.108}, doi = {10.1109/MC.2007.108}, timestamp = {Sat, 09 Apr 2022 01:00:00 +0200}, biburl = {https://dblp.org/rec/journals/computer/AlamASVC07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@article{DBLP:journals/scpe/AlamAVS07, author = {Sadaf R. Alam and Pratul K. Agarwal and Jeffrey S. Vetter and Melissa C. Smith}, title = {Throughput Improvement of Molecular Dynamics Simulations Using Reconfigurable Computing}, journal = {Scalable Comput. Pract. Exp.}, volume = {8}, number = {4}, year = {2007}, url = {http://www.scpe.org/index.php/scpe/article/view/434}, timestamp = {Wed, 17 Feb 2021 00:00:00 +0100}, biburl = {https://dblp.org/rec/journals/scpe/AlamAVS07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/bibe/AlamAK07, author = {Sadaf R. Alam and Pratul K. Agarwal and Jeffery A. Kuehn}, title = {Performance Evaluation of a Scalable Molecular Dynamics Simulation Framework on a Massively-Parallel System}, booktitle = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical School, Boston, MA, {USA}}, pages = {1459--1466}, publisher = {{IEEE} Computer Society}, year = {2007}, url = {https://doi.org/10.1109/BIBE.2007.4375777}, doi = {10.1109/BIBE.2007.4375777}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/bibe/AlamAK07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ipps/AlamA07, author = {Sadaf R. Alam and Pratul K. Agarwal}, title = {On the Path to Enable Multi-scale Biomolecular Simulations on PetaFLOPS Supercomputer with Multi-core Processors}, booktitle = {21th International Parallel and Distributed Processing Symposium {(IPDPS} 2007), Proceedings, 26-30 March 2007, Long Beach, California, {USA}}, pages = {1--8}, publisher = {{IEEE}}, year = {2007}, url = {https://doi.org/10.1109/IPDPS.2007.370443}, doi = {10.1109/IPDPS.2007.370443}, timestamp = {Fri, 24 Mar 2023 00:00:00 +0100}, biburl = {https://dblp.org/rec/conf/ipps/AlamA07.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
@inproceedings{DBLP:conf/ppopp/AlamVAG06, author = {Sadaf R. Alam and Jeffrey S. Vetter and Pratul K. Agarwal and Al Geist}, editor = {Josep Torrellas and Siddhartha Chatterjee}, title = {Performance characterization of molecular dynamics techniques for biomolecular simulations}, booktitle = {Proceedings of the {ACM} {SIGPLAN} Symposium on Principles and Practice of Parallel Programming, {PPOPP} 2006, New York, New York, USA, March 29-31, 2006}, pages = {59--68}, publisher = {{ACM}}, year = {2006}, url = {https://doi.org/10.1145/1122971.1122983}, doi = {10.1145/1122971.1122983}, timestamp = {Sun, 12 Jun 2022 19:46:08 +0200}, biburl = {https://dblp.org/rec/conf/ppopp/AlamVAG06.bib}, bibsource = {dblp computer science bibliography, https://dblp.org} }
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