Volume 9, Number 1, March 2011

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  John L. Baker, Giorgio A. Ascoli: Tracking the Source of Quantitative Knowledge in Neuroscience: A Neuroinformatics Role for Computational Models. 1-2
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  Roberto Santana, Concha Bielza, Pedro Larrañaga: Optimizing Brain Networks Topologies Using Multi-objective Evolutionary Computation. 3-19
• 
  Mei-Yu Hsiao, Chien-Chung Chen, Jyh-Horng Chen: BrainKnowledge: A Human Brain Function Mapping Knowledge-Base System. 21-38
• 
  Bitao Shi, Jennifer Bourne, Kristen M. Harris: SynapticDB, Effective Web-based Management and Sharing of Data from Serial Section Electron Microscopy. 39-57
• 
  Min Wang, Hehuang Xie, Wendy Stellpflug, Veena Rajaram, Maria F. Bonaldo, Stewart Goldman, Tadanori Tomita, Marcelo Bento Soares: BTECH: A Platform to Integrate Genomic, Transcriptomic and Epigenomic Alterations in Brain Tumors. 59-67
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  Alark Joshi, Dustin Scheinost, Hirohito Okuda, Dominique Belhachemi, Isabella Murphy, Lawrence H. Staib, Xenophon Papademetris: Unified Framework for Development, Deployment and Robust Testing of Neuroimaging Algorithms. 69-84
• 
  Isabella Castiglioni, Barbara Canesi, Andrea Schenone, Marco Fato, Daniela Perani, Maria Carla Gilardi: Grid-distributed Statistical Parametric Mapping of SPECT and PET Neuroimages. 85-90
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  Hermann Cuntz, Friedrich Forstner, Alexander Borst, Michael Häusser: The TREES Toolbox - Probing the Basis of Axonal and Dendritic Branching. 91-96

Volume 9, Numbers 2-3, September 2011

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  Karel Svoboda: The Past, Present, and Future of Single Neuron Reconstruction. 97-98
• 
  Yuan Liu: The DIADEM and Beyond. 99-102
• 
  Hanchuan Peng, Fuhui Long, Ting Zhao, Eugene W. Myers: Proof-editing is the Bottleneck Of 3D Neuron Reconstruction: The Problem and Solutions. 103-105
• 
  Hai Yan He, Hollis T. Cline: Diadem X: Automated 4 Dimensional Analysis of Morphological Data. 107-112
• 
  Izumi Sugihara: Bright Field Neuronal Preparation Optimized for Automatic Computerized Reconstruction, a Case with Cerebellar Climbing Fibers. 113-118
• 
  Stephen L. Senft: A Brief History of Neuronal Reconstruction. 119-128
• 
  Alison J. Canty, Vincenzo De Paola: Axonal Reconstructions Going Live. 129-131
• 
  James Kozloski: Automated Reconstruction of Neural Tissue and the Role of Large-Scale Simulation. 133-142
• 
  Kerry M. Brown, Germán Barrionuevo, Alison J. Canty, Vincenzo De Paola, Judith A. Hirsch, Gregory S. X. E. Jefferis, Ju Lu, Marjolein Snippe, Izumi Sugihara, Giorgio A. Ascoli: The DIADEM Data Sets: Representative Light Microscopy Images of Neuronal Morphology to Advance Automation of Digital Reconstructions. 143-157
• 
  Ju Lu: Neuronal Tracing for Connectomic Studies. 159-166
• 
  Rodney J. Douglas, Kevan A. C. Martin: What's Black and White About the Grey Matter? 167-179
• 
  Erhan Bas, Deniz Erdogmus: Principal Curves as Skeletons of Tubular Objects - Locally Characterizing the Structures of Axons. 181-191
• 
  Yu Wang, Arunachalam Narayanaswamy, Chia-Ling Tsai, Badrinath Roysam: A Broadly Applicable 3-D Neuron Tracing Method Based on Open-Curve Snake. 193-217
• 
  Arunachalam Narayanaswamy, Yu Wang, Badrinath Roysam: 3-D Image Pre-processing Algorithms for Improved Automated Tracing of Neuronal Arbors. 219-231
• 
  Todd A. Gillette, Kerry M. Brown, Giorgio A. Ascoli: The DIADEM Metric: Comparing Multiple Reconstructions of the Same Neuron. 233-245
• 
  Ting Zhao, Jun Xie, Fernando Amat, Nathan G. Clack, Parvez Ahammad, Hanchuan Peng, Fuhui Long, Eugene W. Myers: Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models. 247-261
• 
  Paarth Chothani, Vivek Mehta, Armen Stepanyants: Automated Tracing of Neurites from Light Microscopy Stacks of Images. 263-278
• 
  Engin Türetken, Germán González, Christian Blum, Pascal Fua: Automated Reconstruction of Dendritic and Axonal Trees by Global Optimization with Geometric Priors. 279-302
• 
  Todd A. Gillette, Kerry M. Brown, Karel Svoboda, Yuan Liu, Giorgio A. Ascoli: DIADEMchallenge.Org: A Compendium of Resources Fostering the Continuous Development of Automated Neuronal Reconstruction. 303-304
• 
  Jonathan Luisi, Arunachalam Narayanaswamy, Zachary Galbreath, Badrinath Roysam: The FARSIGHT Trace Editor: An Open Source Tool for 3-D Inspection and Efficient Pattern Analysis Aided Editing of Automated Neuronal Reconstructions. 305-315

Volume 9, Number 4, December 2011

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  David N. Kennedy, Giorgio A. Ascoli, Erik De Schutter: Next Steps in Data Publishing. 317-320
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  Elissaios Karageorgiou, S. Charles Schulz, Randy L. Gollub, Nancy Andreasen, Beng-Choon Ho, John Lauriello, Vince D. Calhoun, H. Jeremy Bockholt, Scott R. Sponheim, Apostolos P. Georgopoulos: Neuropsychological Testing and Structural Magnetic Resonance Imaging as Diagnostic Biomarkers Early in the Course of Schizophrenia and Related Psychoses. 321-333
• 
  Kourosh Jafari-Khouzani, Kost V. Elisevich, Suresh Patel, Hamid Soltanian-Zadeh: Dataset of Magnetic Resonance Images of Nonepileptic Subjects and Temporal Lobe Epilepsy Patients for Validation of Hippocampal Segmentation Techniques. 335-346
• 
  Pedro L. López-Cruz, Concha Bielza, Pedro Larrañaga, Ruth Benavides-Piccione, Javier DeFelipe: Models and Simulation of 3D Neuronal Dendritic Trees Using Bayesian Networks. 347-369
• 
  Jack L. Lancaster, David Reese McKay, Matthew D. Cykowski, Michael J. Martinez, Xi Tan, Sunil Valaparla, Yi Zhang, Peter T. Fox: Automated Analysis of Fundamental Features of Brain Structures. 371-380
• 
  Brian B. Avants, Nicholas J. Tustison, Jue Wu, Philip A. Cook, James C. Gee: An Open Source Multivariate Framework for n-Tissue Segmentation with Evaluation on Public Data. 381-400
• 
  Szymon Leski, Klas H. Pettersen, Beth Tunstall, Gaute T. Einevoll, John Gigg, Daniel K. Wójcik: Inverse Current Source Density Method in Two Dimensions: Inferring Neural Activation from Multielectrode Recordings. 401-425
• 
  Maurizio Bergamino, Laura Saitta, Lucio Castellan, Gianluigi Zona, Bruno Bartolini, Renato Spaziante, Luca Roccatagliata: Cerebral Aneurysms Database, a New Free Database for Intracranial Aneurysms. 427-430

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