Volume 7, Number 1-2, February/April 2000

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  Gesine Reinert, Sophie Schbath, Michael S. Waterman: Probabilistic and Statistical Properties of Words: An Overview. 1-46
• 
  Sophie Schbath, Nathalie Bossard, Simon Tavaré: The Effect of Nonhomogeneous Clone Length Distribution on the Progress of an STS Mapping Project. 47-57
• 
  Vineet Bafna, Sridhar Hannenhalli, Ken Rice, Lisa Vawter: Ligand-Receptor Pairing Via Tree Comparison. 59-70
• 
  Alberto Apostolico, Mary Ellen Bock, Stefano Lonardi, Xuyan Xu: Efficient Detection of Unusual Words. 71-94
• 
  Tommi Jaakkola, Mark Diekhans, David Haussler: A Discriminative Framework for Detecting Remote Protein Homologies. 95-114
• 
  Dirk Drasdo, Terence Hwa, Michael Lässig: Scaling Laws and Similarity Detection in Sequence Alignment with Gaps. 115-141
• 
  Dai Wang, Cheng Zhao, Rong Cheng, Fengzhu Sun: Estimation of the Mutation Rate During Error-prone Polymerase Chain Reaction. 143-158
• 
  Gráinne McGuire, Frank Wright, Michael J. Prentice: A Bayesian Model for Detecting Past Recombination Events in DNA Multiple Alignments. 159-170
• 
  Martin Fekete, Ivo L. Hofacker, Peter F. Stadler: Prediction of RNA Base Pairing Probabilities on Massively Parallel Computers. 171-182
• 
  Igor N. Berezovsky, Natalia G. Esipova, Vladimir G. Tumanyan: Hierarchy of Regions of Amino Acid Sequence with Respect to Their Role in the Protein Spatial Structure. 183-192
• 
  Sophie Schbath: An Overview on the Distribution of Word Counts in Markov Chains. 193-201
• 
  Zheng Zhang, Scott Schwartz, Lukas Wagner, Webb Miller: A Greedy Algorithm for Aligning DNA Sequences. 203-214
• 
  Vasily Ramensky, Vsevolod Makeev, Mikhail A. Roytberg, Vladimir G. Tumanyan: DNA Segmentation Through the Bayesian Approach. 215-231
• 
  Scott C. Schmidler, Jun S. Liu, Douglas L. Brutlag: Bayesian Segmentation of Protein Secondary Structure. 233-248
• 
  François Rodolphe, Catherine Mathé: Translation Conditional Models for Protein Coding Sequences. 249-260
• 
  Gaston H. Gonnet, Chantal Korostensky, Steven A. Benner: Evaluation Measures of Multiple Sequence Alignments. 261-276
• 
  Vincent Moulton, Michael Zuker, Mike A. Steel, Robin Pointon, David Penny: Metrics on RNA Secondary Structures. 277-292
• 
  Piotr Berman, Zheng Zhang, Yuri I. Wolf, Eugene V. Koonin, Webb Miller: Winnowing Sequences from a Database Search. 293-302
• 
  Richard M. Karp, Ron Shamir: Algorithms for Optical Mapping. 303-316
• 
  Edward C. Thayer, Chris Bystroff, David Baker: Detection of Protein Coding Sequences Using a Mixture Model for Local Protein Amino Acid Sequence. 317-327

Volume 7, Number 3-4, August 2000

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  Ron Shamir: Preface: Special RECOMB 2000 Issue. 329-330
• 
  Tatsuya Akutsu, Satoru Miyano, Satoru Kuhara: Algorithms for Identifying Boolean Networks and Related Biological Networks Based on Matrix Multiplication and Fingerprint Function. 331-343
• 
  Laurent Marsan, Marie-France Sagot: Algorithms for Extracting Structured Motifs Using a Suffix Tree with an Application to Promoter and Regulatory Site Consensus Identification. 345-362
• 
  Y. Zenmei Ohkubo, Gordon M. Crippen: Potential Energy Function for Continuous State Models of Globular Proteins. 363-379
• 
  Alberto Apostolico, Gill Bejerano: Optimal Amnesic Probabilistic Automata or How to Learn and Classify Proteins in Linear Time and Space. 381-393
• 
  Steffen Heber, Jens Stoye, Marcus Frohme, Jörg D. Hoheisel, Martin Vingron: Contig Selection in Physical Mapping. 395-408
• 
  Rune B. Lyngsø, Christian N. S. Pedersen: RNA Pseudoknot Prediction in Energy-Based Models. 409-427
• 
  Kevin Chen, Dannie Durand, Martin Farach-Colton: NOTUNG: A Program for Dating Gene Duplications and Optimizing Gene Family Trees. 429-447
• 
  Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein: A Computational Method for NMR-Constrained Protein Threading. 449-467
• 
  Jon M. Sorenson, Teresa Head-Gordon: Matching Simulation and Experiment: A New Simplified Model for Simulating Protein Folding. 469-481
• 
  Alexander Zien, Ralf Zimmer, Thomas Lengauer: A Simple Iterative Approach to Parameter Optimization. 483-501
• 
  Amir Ben-Dor, Richard M. Karp, Benno Schwikowski, Zohar Yakhini: Universal DNA Tag Systems: A Combinatorial Design Scheme. 503-519
• 
  David Sankoff, David Bryant, Mélanie Deneault, B. Franz Lang, Gertraud Burger: Early Eukaryote Evolution Based on Mitochondrial Gene Order Breakpoints. 521-535
• 
  Christopher Bailey-Kellogg, Alik Widge, John J. Kelley, Marcelo J. Berardi, John H. Bushweller, Bruce Randall Donald: The NOESY Jigsaw: Automated Protein Secondary Structure and Main-Chain Assignment from Sparse, Unassigned NMR Data. 537-558
• 
  Amir Ben-Dor, Laurakay Bruhn, Nir Friedman, Iftach Nachman, Michèl Schummer, Zohar Yakhini: Tissue Classification with Gene Expression Profiles. 559-583
• 
  Reece Hart, Ajay K. Royyuru, Gustavo Stolovitzky, Andrea Califano: Systematic and Fully Automated Identification of Protein Sequence Patterns. 585-600
• 
  Nir Friedman, Michal Linial, Iftach Nachman, Dana Pe'er: Using Bayesian Networks to Analyze Expression Data. 601-620
• 
  Franco P. Preparata, Eli Upfal: Sequencing-by-Hybridization at the Information-Theory Bound: An Optimal Algorithm. 621-630
• 
  Abstracts from TIGR's Fourth Annual Conference on Computational Genomics November 16-19, 2000, Baltimore, MD. 631-651

Volume 7, Number 5, October 2000

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  Martin Lermen, Knut Reinert: The Practical Use of the A* Algorithm for Exact Multiple Sequence Alignment. 655-671
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  Ognyan Stoyanov, Alexander Kister, Israel Gelfand, Casimir A. Kulikowski, Cyrus Chothia: Geometric Invariant Core for the CL and CH1 Domains of Immunoglobulin Molecules. 673-684
• 
  Ingvar Eidhammer, Inge Jonassen, William R. Taylor: Structure Comparison and Structure Patterns. 685-716
• 
  Simon Cawley, Terence P. Speed: DNA Sequencing with Transposons. 717-729
• 
  Vladimir Makarenkov, Bruno Leclerc: Comparison of Additive Trees Using Circular Orders. 731-744
• 
  Richard M. Karp, Itsik Pe'er, Ron Shamir: An Algorithm Combining Discrete and Continuous Methods for Optical Mapping. 745-760

Volume 7, Number 6, December 2000

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  Tobias Müller, Martin Vingron: Modeling Amino Acid Replacement. 761-776
• 
  Pavel A. Pevzner, Vlado Dancík, Chris L. Tang: Mutation-Tolerant Protein Identification by Mass Spectrometry. 777-787
• 
  Richard Desper, Feng Jiang, Olli-P. Kallioniemi, Holger Moch, Christos H. Papadimitriou, Alejandro A. Schäffer: Distance-Based Reconstruction of Tree Models for Oncogenesis. 789-803
• 
  Trey Ideker, Vesteinn Thorsson, Andrew F. Siegel, Leroy E. Hood: Testing for Differentially-Expressed Genes by Maximum-Likelihood Analysis of Microarray Data. 805-817
• 
  M. Kathleen Kerr, Mitchell Martin, Gary A. Churchill: Analysis of Variance for Gene Expression Microarray Data. 819-837
• 
  Dirk Faulhammer, Richard J. Lipton, Laura F. Landweber: Fidelity of Enzymatic Ligation for DNA Computing. 839-848
• 
  I. Saira Mian, Inna Dubchak: Representing and Reasoning about Protein Families Using Generative and Discriminative Methods. 849-862

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