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ORCIDInternational Journal of Bioinformatics Research and Applications, Volume 9
Volume 9, Number 1, 2013
- Sangeeta Saxena
, Rupesh K. Kesharwani, Vinayak Singh, Sarita Singh:
Designing of putative siRNA against geminiviral suppressors of RNAi to develop geminivirus-resistant papaya crop. 3-12 - Jingli Wu, Jianxin Wang, Jianer Chen:
A heuristic algorithm for haplotype reconstruction from aligned weighted SNP fragments. 13-24 - Minzhu Xie, Jing Wang:
Parameterised algorithms of the individual haplotyping problem with gaps. 25-40 - Guangya Zhang:
A simple statistical method for discrimination of thermophilic and mesophilic proteins based on amino acid composition. 41-52 - Vijayan Vinaya, Prachi Deshpande, Chetan J. Gadgil, Mugdha Gadgil:
Comparison of methods for identifying periodically varying genes. 53-70 - Pushpike Jayantha Thilakarathne, Geert Verbeke, Kristof Engelen, Kathleen Marchal, Dan Lin:
Identifying differentially expressed genes in the absence of replication. 71-90 - Susanne Cappendijk, Geoffery L. Miller, Patrick L. Yount, Robert A. van Engelen:
Automatic data analysis of real-time song and locomotor activity in zebra finches. 91-108
Volume 9, Number 2, 2013
- Medhavi Mallick, Devang Odedra, Ambarish Sharan Vidyarthi, Shankaracharya:
Meropenem: a potent drug against superbug as unveiled through bioinformatics approaches. 109-120 - Anasua Sarkar, Macha Nikolski, Pascal Durrens:
The family based variability in protein family expansion. 121-133 - Dianwei Han, Guiliang Tang, Jun Zhang:
A parallel strategy for predicting the secondary structure of polycistronic microRNAs. 134-155 - Siuly, Yan Li, Peng Wen:
Identification of motor imagery tasks through CC-LR algorithm in brain computer interface. 156-172 - Gang Chen, Jianhuang Li, Jianxin Wang:
Evaluation of gene ontology semantic similarities on protein interaction datasets. 173-183 - R. Seenivasagam, K. Hemavathi, G. Sivakumar, Vidya Niranjan:
Discovering novel carriers for oral insulin tablets: a pharmacoinformatics approach. 184-206 - Wei Yang, Kuanquan Wang, Wangmeng Zuo:
Prediction of protein secondary structure using large margin nearest neighbour classification. 207-219
Volume 9, Number 3, 2013
- Xiang Jia Min:
ASFinder: a tool for genome-wide identification of alternatively splicing transcripts from EST-derived sequences. 221-226 - Arpita Kundu, Parvathy Ramakrishnan, Ambika Rajendran, Nivedita V. Dharwar, Anand Anbarasu:
Analysis of non-synonymous single-nucleotide polymorphisms and population variability of PLD2 gene associated with hypertension. 227-241 - Wei Hu:
Predicting Pathologic Complete Response to neoadjuvant chemotherapy in breast cancer using Sparse Logistic Regression. 242-260 - Silas Sallaume, Simone de Lima Martins, Luiz Satoru Ochi, Warley Gramacho Da Silva, Carlile Lavor, Leo Liberti:
A discrete search algorithm for finding the structure of protein backbones and side chains. 261-270 - Jinyan Huang:
An ensemble learning approach for prediction of phosphorylation sites. 271-284 - Liliana López Kleine, Nicolás Molano, Luis Ospina:
Using multivariate methods to infer knowledge from genomic data. 285-300 - Swaraj Priyaranjan Kunal, Girish Kumar:
Cytochrome Oxidase I (COI) sequence conservation and variation patterns in the yellowfin and longtail tunas. 301-309
Volume 9, Number 4, 2013
- Nirmal K. Prasad, Vaibhav Vindal:
In silico analysis of mt 16S rRNA sequences of ocypodid crabs. 311-322 - Abdesslem Layeb, Marwa Selmane, Maroua Bencheikh Elhoucine:
A new greedy randomised adaptive search procedure for multiple sequence alignment. 323-335 - Jamal M. Arif, Mohd. Haris Siddiqui, Salman Akhtar, Othman A. Al-Sagair:
Exploitation of in silico potential in prediction, validation and elucidation of mechanism of anti-angiogenesis by novel compounds: comparative correlation between wet lab and in silico data. 336-348 - Gobind Ram, Arun Dev Sharma:
In silico analysis of putative miRNAs and their target genes in sorghum (Sorghum bicolor). 349-364 - Daniel R. Hyduke, Evagelia C. Laiakis, Heng-Hong Li, Albert J. Fornace Jr.:
Identifying radiation exposure biomarkers from mouse blood transcriptome. 365-385 - Bailing Zhang, Tuan D. Pham:
Serial fusion of random subspace ensemble for subcellular phenotype images classification. 386-406 - Rogier J. P. van Berlo, Wynand Winterbach, Marco J. L. de Groot, Andreas Bender, Peter J. T. Verheijen, Marcel J. T. Reinders, Dick de Ridder:
Efficient calculation of compound similarity based on maximum common subgraphs and its application to prediction of gene transcript levels. 407-432
Volume 9, Number 5, 2013
- Huixiao Hong, Qilong Hong, Jie Liu, Weida Tong, Leming Shi:
Estimating relative noise to signal in DNA microarray data. 433-448 - Roshan Ali, Ghosia Lutfullah, Abid Ali Khan, Muhammad Ibrahim Rashid:
Analysis of oxygen affinity in aquatic amphibian; homology modelling of the major Haemoglobin component HbA1 from the African clawed frog (Xenopus laevis, Anura). 449-461 - Márcio Dorn, Osmar Norberto de Souza:
An interval-based algorithm to represent conformational states of experimentally determined polypeptide templates and fast prediction of approximated 3D protein structures. 462-486 - M. Udayakumar, Pupala Suresh Kumar, K. Hemavathi, P. Shanmugapriya, R. Seenivasagam:
Receptor-based pharmacophore tool for design and development of next-generation drugs. 487-516 - Xinye Cai, Sanjoy Das, Stephen M. Welch:
A novel strategy for plant breeding based on simulations of gene network models. 517-533 - Muhammed Al-Mulhem, Raed Al-Shaikh:
Performance modelling of parallel BLAST using Intel and PGI compilers on an infiniband-based HPC cluster. 534-546 - Girish Kumar, Swaraj Priyaranjan Kunal:
Historic demography and phylogenetic relationship of Euthynnus species based on COI sequence analyses. 547-555
Volume 9, Number 6, 2013
- S. Seema, R. Seenivasagam, K. Hemavathi:
In-silico analysis for RNA-interference mechanism of α-synuclein to treat Parkinson's disease. 557-575 - Tiratha Raj Singh, Arun Gupta, Prashanth Suravajhala:
Challenges in the miRNA research. 576-583 - Hayedeh Ahrabian, Mohammad Ganjtabesh, Abbas Nowzari-Dalini, Zahra Razaghi Moghadam Kashani:
Genetic algorithm solution for partial digest problem. 584-594 - Chakresh Kumar Jain, Ankita Dasgupta, Naina Taneja, Sonal Chaubey, Reema Gabrani, Sanjeev Kumar Sharma, Sanjay Gupta:
Putative drug targets in Rhizopus oryzae: in-silico insight. 595-603 - Girish Kumar, Swaraj Priyaranjan Kunal, S. K. Shyama:
Evolutionary history and phylogenetic relationship between Auxis thazard and Auxis rochei inferred from COI sequences of mtDNA. 604-613 - Muhammad Ishaq Afridi:
Novel hybrid genetic algorithm for progressive multiple sequence alignment. 614-624
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