Volume 5,
Number 1,
2009
- Jamal Alhiyafi, Cavitha Sabesan, Shiyong Lu, Jeffrey L. Ram:
RECOMBFLOW: a scientific workflow environment for Intragenomic Gene Conversion analysis in bacterial genomes, including the pathogen Streptococcus pyogenes.
1-19
- Abdur R. Sikder, Albert Y. Zomaya:
Analysis of protein phosphorylation site predictors with an independent dataset.
20-37
- Jingli Wu, Jianxin Wang, Jianer Chen:
A practical algorithm for multiplex PCR primer set selection.
38-49
- Fang-Xiang Wu, Zhonghang Xia, Lei Mu:
Finding Significantly Expressed genes from time-course expression profiles.
50-63
- Ovidiu Daescu, Jun Luo:
Stabbing balls and simplifying proteins.
64-80
- Israel Mark Martínez-Pérez, Karl-Heinz Zimmermann, Zoya Ignatova:
An autonomous DNA model for finite state automata.
81-96
- Joong Chae Na, Kangho Roh, Alberto Apostolico, Kunsoo Park:
Alignment of biological sequences with quality scores.
97-113
Volume 5,
Number 2,
2009
- Alain Goriely, Sebastien Neukirch, Andrew Hausrath:
Polyhelices through n points.
118-132
- Manoelito C. Dos Santos Jr., Alex G. Taranto, Sandra A. De Assis, Aristoteles Goes-Neto:
Homology modelling of pyrophosphosrylase, enzyme involved in chitin pathway of Moniliophthora perniciosa.
133-153
- Ana Luiza Vivan, Rafael A. Caceres, Luiz Augusto Basso, Diógenes Santiago Santos, Walter F. de Azevedo Jr.:
Structural studies of PNP from Toxoplasma gondii.
154-162
- Gerardo Valdisio R. Viana, Fernando A. C. Gomes, C. E. Ferreira, Cláudio Nogueira de Meneses:
Parallelisation of a multi-neighbourhood local search heuristic for a phylogeny problem.
163-177
- Renata C. Ferreira, Francisco Bosco, Marcelo R. S. Briones:
Scaling properties of transcription profiles in gene networks.
178-186
- Ya-Ju Fan, Wanpracha Art Chaovalitwongse, Chang-Chia Liu, Rajesh C. Sachdeo, Leonidas D. Iasemidis, Panos M. Pardalos:
Optimisation and data mining techniques for the screening of epileptic patients.
187-196
- Rubem P. Mondaini:
Modelling biomolecular structure with geodesic curves through ordered sets of atom sites.
197-206
- Selma T. Milagre, Carlos Dias Maciel, Jose Carlos Pereira, Adriano A. Pereira:
Fuzzy cluster stability analysis with missing values using resampling.
207-223
- Thomas K. F. Wong, Tak Wah Lam, P. Y. Chan, Siu-Ming Yiu:
Correcting short reads with high error rates for improved sequencing result.
224-237
Volume 5,
Number 3,
2009
- Mitchell Koch, Bradley M. Broom, Devika Subramanian:
Learning robust cell signalling models from high throughput proteomic data.
241-253
- Xinye Cai, Praveen Koduru, Sanjoy Das, Stephen Welch:
Simultaneous structure discovery and parameter estimation in gene networks using a multi-objective GP-PSO hybrid approach.
254-268
- Shuxing Zhang, Lei Du-Cuny:
Development and evaluation of a new statistical model for structure-based high-throughput virtual screening.
269-279
- William L. Duax, Robert Huether, Vladimir Pletnev, Timothy C. Umland, Charles M. Weeks:
Divergent evolution of a Rossmann fold and identification of its oldest surviving ancestor.
280-294
- S. O. Opiyo, E. N. Moriyama:
Mining the Arabidopsis and rice genomes for cyclophilin protein families.
295-309
- Rosy Das, Jugal Kalita, Dhruba Kumar Bhattacharyya:
A new approach for clustering gene expression time series data.
310-328
- Raja Loganantharaj:
Beyond clustering of array expressions.
329-348
- Hyrum Carroll, Adam R. Teichert, Jonathan Krein, Kenneth Sundberg, Quinn Snell, Mark J. Clement:
An open source phylogenetic search and alignment package.
349-364
Volume 5,
Number 4,
2009
- Hao Wang, Zhao Xu:
Identification of LTR retrotransposons in eukaryotic genomes: supports from structure and evolution.
365-377
- Wei Chen, Liaofu Luo, Lirong Zhang, Hao Lin:
Recognition of DNase I hypersensitive sites in multiple cell lines.
378-384
- Sérgio A. D. Deusdado, Paulo Carvalho:
GRASPm: an efficient algorithm for exact pattern-matching in genomic sequences.
385-401
- Cristian R. Munteanu, Alexandre L. Magalhaes:
Prot-2S: a new python web tool for protein secondary structure studies.
402-416
- Vijayan Vinaya, Nadeem Bulsara, Chetan J. Gadgil, Mugdha Gadgil:
Comparison of feature selection and classification combinations for cancer classification using microarray data.
417-431
- Rafal Pokrzywa:
Application of the Burrows-Wheeler Transform for searching for tandem repeats in DNA sequences.
432-446
- Julio Vera, Taesoo Kwon, Ulf Schmitz, Walter Kolch, Olaf Wolkenhauer:
Exploration of homodimer receptor: homodimer protein interactions.
447-457
- Andrey Kislyuk, Alexandre Lomsadze, Alla L. Lapidus, Mark Borodovsky:
Frameshift detection in prokaryotic genomic sequences.
458-477
Volume 5,
Number 5,
2009
- Virendra S. Gomase, Akshay N. Parundekar:
microRNA: human disease and development.
479-500
- Nashat Mansour, Christine Kehyayan, Hassan Khachfe:
Scatter Search algorithm for Protein Structure Prediction.
501-515
- Krishnankutty C. Sivakumar, Biju Thomas, Devarajan Karunagaran:
Three dimensional structure of the closed conformation (active) of human merlin reveals masking of actin binding site in the FERM domain.
516-524
- Ashutosh Kumar, Shuchi Smita, Neeti Sahu, Vivekanand Sharma, Shankaracharya, Ambarish S. Vidyarthi, Dev Mani Pandey:
In silico analysis of motifs in promoters of Differentially Expressed Genes in rice (Oryza sativa L.) under anoxia.
525-547
- Virendra S. Gomase, Somnath Tagore:
Phylogenomics: evolution and genomics intersection.
548-563
- Peyman Najmabadi, Hans He Lee, Tony Aung, Aung Thuya, Julio Ng, James J. La Clair, Michael D. Burkart:
Grafta: A 3D environment for biomolecular networks.
564-569
- Susmita Sur-Kolay, Satyajit Banerjee, S. Mukhopadhyaya, C. A. Murthy:
The Double Digest Problem: finding all solutions.
570-592
Volume 5,
Number 6,
2009
- Taysir H. A. Soliman, Tarek F. Gharib, Alshaimaa Abo-Alian, M. A. El Sharkawy:
A Lossless Compression Algorithm for DNA sequences.
593-602
- Viral Vadwai, Shine Devaraj:
Insilico analysis of homocamptothecin (hCPT) analogues for anti-tumour activity.
603-615
- Raju Poddar, Aprajita Mathur, Omkar Uday Kawalekar, Amit Rai, Amogh Bhatnagar:
Modifications of ampicillin structure and its implication: an in-silico approach.
616-624
- Ting Chen, Feng Li:
Identifying cell cycle regulators and combinatorial interactions among transcription factors with microarray data and ChIP-chip data.
625-646
- P. Kiran Sree, I. Ramesh Babu, N. S. S. S. N. Usha Devi:
Investigating an Artificial Immune System to strengthen protein structure prediction and protein coding region identification using the Cellular Automata classifier.
647-662
- Ganiraju Manyam, Ancha V. Baranova, Mikhail Skoblov, Rakesh K. Mishra:
SnS-Align: a graphic tool for alignment of distantly related proteins.
663-673
- Virendra S. Gomase, Aravind K. Tripathi, Somnath Tagore:
Cellunomics: the interaction analysis of cells.
674-690
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