Volume 1, Number 1, 2005

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  Wojciech Szpankowski, Wenhui Ren, Lukasz Szpankowski: An optimal DNA segmentation based on the MDL principle. 3-17
• 
  Tianhua Niu, Zhenjun Hu: Dynamic visual data mining: biological sequence analysis and annotation using SeqVISTA. 18-30
• 
  Suman Sundaresh, She-pin Hung, G. Wesley Hatfield, Pierre Baldi: How noisy and replicable are DNA microarray data? 31-50
• 
  Hyunsoo Kim, Jeff X. Zhou, Herbert C. Morse III, Haesun Park: A three-stage framework for gene expression data analysis by L1-norm support vector regression. 51-62
• 
  Liangjiang Wang, Aidong Zhang, Murali Ramanathan: BioStar models of clinical and genomic data for biomedical data warehouse design. 63-80
• 
  Xiaohua Hu: Mining and analysing scale-free proteinprotein interaction network. 81-101
• 
  Kayvan Najarian, Krishna Gopalakrishnan, R. H. Zadeh: Signal processing for functional analysis of protein mutants. 102-120
• 
  Abdur Rahman, Albert Y. Zomaya: An overview of protein-folding techniques: issues and perspectives. 121-143

Volume 1, Number 2, 2005

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  Bhaskar DasGupta, Kishori M. Konwar, Ion I. Mandoiu, Alexander A. Shvartsman: Highly scalable algorithms for robust string barcoding. 145-161
• 
  Ding-Zhu Du, Frank K. Hwang: Identifying d positive clones in the presence of inhibitors. 162-168
• 
  ZhenQiu Liu, Dechang Chen, Ying Xu, Jian Liu: Logistic support vector machines and their application to gene expression data. 169-182
• 
  Alan Wee-Chung Liew, Yonghui Wu, Hong Yan, Mengsu Yang: Effective statistical features for coding and non-coding DNA sequence classification for yeast, C. elegans and human. 181-201
• 
  Derek A. Ruths, Luay Nakhleh: Recombination and phylogeny: effects and detection. 202-212
• 
  Liang Chen, Sharmin Nilufar: A districted neural network for start codon prediction. 213-220
• 
  Dumitru Brinza, Jingwu He, Weidong Mao, Alexander Zelikovsky: Family trio phasing and missing data recovery. 221-229
• 
  Beeta Masoumi, Marcel Turcotte: Simultaneous alignment and structure prediction of three RNA sequences. 230-245

Volume 1, Number 3, 2005

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  Jingwu He, Kelly Westbrooks, Alexander Zelikovsky: Linear reduction method for predictive and informative tag SNP selection. 249-260
• 
  Bin Zhang, Steve Horvath: Ridge regression based hybrid genetic algorithms for multi-locus quantitative trait mapping. 261-272
• 
  Zheng Liu, James Borneman, Tao Jiang: A software system for gene sequence database construction based on fast approximate string matching. 273-291
• 
  Yair Horesh, Ron Unger: A bottom-up clustering algorithm to detect ncRNA molecules with a common secondary structure. 292-304
• 
  Juan Miguel García-Gómez, José-Miguel Benedí, Javier Vicente, Montserrat Robles: Corpus based learning of stochastic, context-free grammars combined with Hidden Markov Models for tRNA modelling. 305-318
• 
  Robert E. Langlois, Alice Diec, Ognjen Perisic, Yang Dai, Hui Lu: Improved protein fold assignment using support vector machines. 319-334
• 
  Trupti Joshi, Yu Chen, Nickolai Alexandrov, Dong Xu: Cellular function prediction and biological pathway discovery in Arabidopsis thaliana using microarray data. 335-350
• 
  Xiaolin Wu, Sorina Dumitrescu, Pravesh Biyani, Qiang Wu: Fast chromosome karyotyping by auction algorithm. 351-362

Volume 1, Number 4, 2005

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  Ferdinando Cicalese, Peter Damaschke, Ugo Vaccaro: Optimal group testing algorithms with interval queries and their application to splice site detection. 363-388
• 
  Israel Mark Martínez-Pérez, Gong Zhang, Zoya Ignatova, Karl-Heinz Zimmermann: Biomolecular autonomous solution of the Hamiltonian path problem via hairpin formation. 389-398
• 
  Yulan Liang, Arpad Kelemen: Temporal gene expression classification with regularised neural network. 399-413
• 
  Yingshu Li, My T. Thai, Zhen Liu, Weili Wu: Protein-protein interaction and group testing in bipartite graphs. 414-419
• 
  Wei-Mou Zheng: Protein secondary structure prediction by combining hidden Markov models and sliding window scores. 420-428
• 
  Osamu Maruyama, Akiko Matsuda, Satoru Kuhara: Reconstructing phylogenetic trees of prokaryote genomes by randomly sampling oligopeptides. 429-446
• 
  Xiaohua Hu, Illhoi Yoo, Xiaodan Zhang, Payal Nanavati, Debjit Das: Wavelet transformation and cluster ensemble for gene expression analysis. 447-460
• 
  Paola Bonizzoni, Gianluca Della Vedova, Riccardo Dondi, Lorenzo Mariani: Experimental analysis of a new algorithm for partial haplotype completion. 461-473

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