Volume 7, Numbers 1-2, June 2009

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  Wanling Yang, Dingge Ying, Yu-Lung Lau: In-depth cDNA Library Sequencing Provides Quantitative Gene Expression Profiling in Cancer Biomarker Discovery. 1-12
• 
  Jian Li, Kai Wang, Shengting Li, Vera Timmermans-Wielenga, Fritz Rank, Carsten Wiuf, Xiuqing Zhang, Huanming Yang, Lars Bolund: DNA Copy Number Aberrations in Breast Cancer by Array Comparative Genomic Hybridization. 13-24
• 
  Purnima Guda, Sridar V. Chittur, Chittibabu Guda: Comparative Analysis of Protein-Protein Interactions in Cancer-Associated Genes. 25-36
• 
  Catharine Song, Aseem Kumar, Mazen Saleh: Bioinformatic Comparison of Bacterial Secretomes. 37-46
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  Venkata R. S. K. Duvvuri, Bhargavi Duvvuri, Wilfred R. Cuff, Gillian E. Wu, Jianhong Wu: Role of Positive Selection Pressure on the Evolution of H5N1 Hemagglutinin. 47-56
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  Mohd Danishuddin, Asad U. Khan: Phylogenetic Analysis of the Neuraminidase Gene Reveals that the H5N1 Strains Prevalent in Chickens During 2006 Bird Flu Outbreaks in Two Regions of Maharashtra, India Are Genetically Different. 57-61
• 
  Mingfeng Li, Yanzhao Huang, Yi Xiao: A Method for Identification of Selenoprotein Genes in Archaeal Genomes. 62-70
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  Antonio d'Acierno, Angelo M. Facchiano, Anna Marabotti: GALT Protein Database, a Bioinformatics Resource for the Management and Analysis of Structural Features of a Galactosemia-related Protein and Its Mutants. 71-76

Volume 7, Number 3, September 2009

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  Chunyang Li, Ying Wang, Hao Peng, Hejiao Bian, Mingwei Min, Longfei Chen, Qian Liu, Jinku Bao: In silico Analysis of the Potential Infection Mechanisms of Magnaporthe grisea from Horizontal Gene Transfer Hypothesis. 77-86
• 
  Babak Saffari, Hassan Mohabatkar: Computational Analysis of Cysteine Proteases (Clan CA, Family Cl) of Leishmania major to Find Potential Epitopic Regions. 87-95
• 
  K. Vedhagiri, K. Natarajaseenivasan, P. Chellapandi, S. G. Prabhakaran, Joseph Selvin, S. Sharma, P. Vijayachari: Evolutionary Implication of Outer Membrane Lipoprotein-Encoding Genes ompL1, lipL32 and lipL41 of Pathogenic Leptospira Species. 96-106
• 
  Guoqiang Zhang, Lingxia Zhang, Mingcheng Zhang, Linlin Pan, Fengyu Wang, Jun Huang, Guoli Li, Jun Yu, Songnian Hu: Screening and Assessing 11 Mycobacterium tuberculosis Proteins as Potential Serodiagnostical Markers for Discriminating TB Patients from BCG Vaccinees. 107-115
• 
  Dapeng Wang, Song Zhang, Fuhong He, Jiang Zhu, Songnian Hu, Jun Yu: How Do Variable Substitution Rates Influence Ka and Ks Calculations? 116-127
• 
  Pantelis G. Bagos, Georgios N. Tsaousis, Stavros J. Hamodrakas: How Many 3D Structures Do We Need to Train a Predictor? 128-137
• 
  Costas P. Exarchos, Themis P. Exarchos, Costas Papaloukas, Anastassios N. Troganis, Dimitrios I. Fotiadis: PBOND: Web Server for the Prediction of Proline and Non-Proline cis I trans Isomerization. 138-142
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  Qi Wang, Qun Liang, Xiuqing Zhang: 3D Genome Tuner: Compare Multiple Circular Genomes in a 3D Context. 143-146

Volume 7, Number 4, December 2009

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  Yimei Cai, Xiaomin Yu, Songnian Hu, Jun Yu: A Brief Review on the Mechanisms of miRNA Regulation. 147-154
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  Zhiming Dai, Xianhua Dai, Qian Xiang, Jihua Feng: Nucleosomal Context of Binding Sites Influences Transcription Factor Binding Affinity and Gene Regulation. 155-162
• 
  Shintaro Hirayama, Satoshi Mizuta: Significant Deviations in the Configurations of Homologous Tandem Repeats in Prokaryotic Genomes. 163-174
• 
  Jia Jia, Qingzhong Xue: Codon Usage Biases of Transposable Elements and Host Nuclear Genes in Arabidopsis thaliana and Oryza sativa. 175-184
• 
  A. Katiyar, S. K. Lenka, K. Lakshmi, V. Chinnusamy, K. C. Bansal: In Silico Characterization and Homology Modeling of Thylakoid-bound Ascorbate Peroxidase from a Drought Tolerant Wheat Cultivar. 185-193
• 
  Fengfeng Zhou, Victor Olman, Ying Xu: Large-Scale Analyses of Glycosylation in Cellulases. 194-199
• 
  Hualong Yu, Guochang Gu, Haibo Liu, Jing Shen, Jing Zhao: A Modified Ant Colony Optimization Algorithm for Tumor Marker Gene Selection. 200-208

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