Volume 2012, 2012

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  Chetan Kumar, Alok Choudhary: A top-down approach to classify enzyme functional classes and sub-classes using random forest. 1
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  Florian Nigsch, Janna Hutz, Ben Cornett, Douglas W. Selinger, Gregory McAllister, Somnath Bandyopadhyay, Joseph Loureiro, Jeremy L. Jenkins: Determination of minimal transcriptional signatures of compounds for target prediction. 2
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  Seyedbehzad Nabavi, Cranos M. Williams: A novel cost function to estimate parameters of oscillatory biochemical systems. 3
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  Jan Hasenauer, Julian Heinrich, Malgorzata Doszczak, Peter Scheurich, Daniel Weiskopf, Frank Allgöwer: A visual analytics approach for models of heterogeneous cell populations. 4
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  David Murrugarra, Alan Veliz-Cuba, Boris Aguilar, Seda Arat, Reinhard C. Laubenbacher: Modeling stochasticity and variability in gene regulatory networks. 5
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  Onder Suvak, Alper Demir: Phase computations and phase models for discrete molecular oscillators. 6
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  Noriko Hiroi, Michael Klann, Keisuke Iba, Pablo de Heras Ciechomski, Shuji Yamashita, Akito Tabira, Takahiro Okuhara, Takeshi Kubojima, Yasunori Okada, Kotaro Oka, Robin Mange, Michael Unger, Akira Funahashi, Heinz Koeppl: From Microscopy Data to in silico Environments for in vivo Oriented Simulations. 7
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  Kirk K. Durston, David D. K. Chiu, Andrew K. C. Wong, Gary C. L. Li: Statistical discovery of site inter-dependencies in sub-molecular hierarchical protein structuring. 8
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  Aleksander Andreychenko, Linar Mikeev, David Spieler, Verena Wolf: Approximate maximum likelihood estimation for stochastic chemical kinetics. 9
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  Daniela Besozzi, Paolo Cazzaniga, Dario Pescini, Giancarlo Mauri, Sonia Colombo, Enzo Martegani: The role of feedback control mechanisms on the establishment of oscillatory regimes in the Ras/cAMP/PKA pathway in S. cerevisiae. 10
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  Peteris Zikmanis, Inara Kampenusa: Relationships between kinetic constants and the amino acid composition of enzymes from the yeast Saccharomyces cerevisiae glycolysis pathway. 11
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  Rajasekhar Kakumani, M. Omair Ahmad, Vijay Kumar Devabhaktuni: Identification of CpG Islands in DNA Sequences using Statistically Optimal Null Filters. 12
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  Tomasz M. Ignac, Nikita A. Sakhanenko, David J. Galas: Relations between the set-complexity and the structure of graphs and their sub-graphs. 13
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  Ronny Feuer, Katrin Gottlieb, Gero Viertel, Johannes Georg Klotz, Steffen Schober, Martin Bossert, Oliver Sawodny, Georg A. Sprenger, Michael Ederer: Model-based analysis of an adaptive evolution experiment with Escherichia coli in a pyruvate limited continuous culture with glycerol. 14
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  Ryan Bressler, Jake Lin, Andrea Eakin, Thomas Robinson, Richard Kreisberg, Hector Rovira, Theo A. Knijnenburg, John Boyle, Ilya Shmulevich: Fastbreak: a tool for analysis and visualization of structural variations in genomic data. 15
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  Ahmad Rushdi, Jamal Tuqan, Thomas Strohmer: Map-invariant spectral analysis for the identification of DNA periodicities. 16
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  Martin Puchinger, Clemens Zarzer, Philipp Kügler, Erwin Gaubitzer, Gottfried Köhler: In vitro detection of adrenocorticotropic hormone levels by fluorescence correlation spectroscopy immunoassay for mathematical modeling of glucocorticoid-mediated feedback mechanisms. 17
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  Bilal Wajid, Erchin Serpedin, Mohamed N. Nounou, Hazem N. Nounou: Optimal reference sequence selection for genome assembly using minimum description length principle. 18
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  Xiangfang Li, Lijun Qian, Edward R. Dougherty: Dynamical modeling of drug effect using hybrid systems. 19

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