Volume 2009, 2009

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  Sandra Andorf, Tanja Gärtner, Matthias Steinfath, Hanna Witucka-Wall, Thomas Altmann, Dirk Repsilber: Towards Systems Biology of Heterosis: A Hypothesis about Molecular Network Structure Applied for the Arabidopsis Metabolome.
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  Simon Rosenfeld: Origins of Stochasticity and Burstiness in High-Dimensional Biochemical Networks.
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  Nicole Radde: The Impact of Time Delays on the Robustness of Biological Oscillators and the Effect of Bifurcations on the Inverse Problem.
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  Cordula Zeller, Holger Fröhlich, Achim Tresch: A Bayesian Network View on Nested Effects Models.
• 
  Catharina Olsen, Patrick Emmanuel Meyer, Gianluca Bontempi: On the Impact of Entropy Estimation on Transcriptional Regulatory Network Inference Based on Mutual Information.
• 
  Wei Dai, Mona A. Sheikh, Olgica Milenkovic, Richard G. Baraniuk: Compressive Sensing DNA Microarrays.
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  Sophie Schbath, Vincent Lacroix, Marie-France Sagot: Assessing the Exceptionality of Coloured Motifs in Networks.
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  Peter van Nes, Domenico Bellomo, Marcel J. T. Reinders, Dick de Ridder: Stability from Structure: Metabolic Networks Are Unlike Other Biological Networks.
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  Xin Gao, Daniel Q. Pu, Peter X. K. Song: Transition Dependency: A Gene-Gene Interaction Measure for Times Series Microarray Data.
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  Muhammad Shoaib B. Sehgal, Iqbal Gondal, Laurence S. Dooley, Ross L. Coppel: How to Improve Postgenomic Knowledge Discovery Using Imputation.
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  Dirk Repsilber, Thomas Martinetz, Mats Björklund: Adaptive Dynamics of Regulatory Networks: Size Matters.
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  Oliver Ebenhöh, Thomas Handorf: Functional Classification of Genome-Scale Metabolic Networks.
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  Mingzhou (Joe) Song, Chris K. Lewis, Eric R. Lance, Elissa J. Chesler, Roumyana Kirova Yordanova, Michael A. Langston, Kerrie H. Lodowski, Susan E. Bergeson: Reconstructing Generalized Logical Networks of Transcriptional Regulation in Mouse Brain from Temporal Gene Expression Data.
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  Wentao Zhao, Erchin Serpedin, Edward R. Dougherty: Spectral Preprocessing for Clustering Time-Series Gene Expressions.
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  Julien Epps: A Hybrid Technique for the Periodicity Characterization of Genomic Sequence Data.
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  Byung-Jun Yoon: Efficient Alignment of RNAs with Pseudoknots Using Sequence Alignment Constraints.
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  Babak Faryabi, Golnaz Vahedi, Jean-François Chamberland, Aniruddha Datta, Edward R. Dougherty: Intervention in Context-Sensitive Probabilistic Boolean Networks Revisited.
• 
  Wentao Zhao, Erchin Serpedin, Edward R. Dougherty: Identifying Genes Involved in Cyclic Processes by Combining Gene Expression Analysis and Prior Knowledge.
• 
  Thang T. Vu, Ulisses Braga-Neto: Is Bagging Effective in the Classification of Small-Sample Genomic and Proteomic Data?
• 
  Travis J. Hestilow, Yufei Huang: Clustering of Gene Expression Data Based on Shape Similarity.
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  Erchin Serpedin, Javier Garcia-Frias, Yufei Huang, Ulisses Braga-Neto: Applications of Signal Processing Techniques to Bioinformatics, Genomics, and Proteomics.
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  Kuang Lin, Dirk Husmeier: Modelling Transcriptional Regulation with a Mixture of Factor Analyzers and Variational Bayesian Expectation Maximization.
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  Hendrik Hache, Hans Lehrach, Ralf Herwig: Reverse Engineering of Gene Regulatory Networks: A Comparative Study.
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  Joachim Selbig, Matthias Steinfath, Dirk Repsilber: Network Structure and Biological Function: Reconstruction, Modeling, and Statistical Approaches.
• 
  Zhouyi Xu, Xiaodong Cai: Stochastic Simulation of Delay-Induced Circadian Rhythms in Drosophila.
• 
  Chushin Koh, Fang-Xiang Wu, Gopalan Selvaraj, Anthony J. Kusalik: Using a State-Space Model and Location Analysis to Infer Time-Delayed Regulatory Networks.
• 
  Youting Sun, Ulisses Braga-Neto, Edward R. Dougherty: Impact of Missing Value Imputation on Classification for DNA Microarray Gene Expression Data - A Model-Based Study.
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  Anthony Almudevar: Selection of Statistical Thresholds in Graphical Models.

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