Volume 178, Number 1, January 2008

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  Shin-ichi Satake, Takafumi Anraku, Hiroyuki Kanamori, Tomoaki Kunugi, Kazuho Sato, Tomoyoshi Ito: Study on high speed parallel algorithm using PC grid environment for visualization measurements by Digital Holographic Particle Tracking Velocimetry. 1-7
• 
  B. Eliasson: A nonuniform nested grid method for simulations of RF induced ionospheric turbulence. 8-14
• 
  Jesús Vigo-Aguiar, J. Martín-Vaquero, Higinio Ramos: Exponential fitting BDF-Runge-Kutta algorithms. 15-34
• 
  A. Schiavi: A transmission matrix model for ion beam energy deposition in stack detectors. 35-39
• 
  M. E. Monville, J. D. Lamb, J. C. G. Pereira, J. A. Truter: Simulation of laser-induced nanopattern formation. 40-47

• 
  G. E. Ballentine, G. F. Bertsch, N. Onishi, Kazuhiro Yabana: Moment distributions of clusters and molecules in the adiabatic rotor model. 48-51
• 
  Korneel van den Broek: Vscape V1.1.0. An interactive tool for metastable vacua. 52-72

Volume 178, Number 2, January 2008

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  Ken-ichi Nomura, Rajiv K. Kalia, Aiichiro Nakano, Priya Vashishta: A scalable parallel algorithm for large-scale reactive force-field molecular dynamics simulations. 73-87
• 
  Frederic Wrobel: Detailed history of recoiling ions induced by nucleons. 88-104
• 
  Patrick H. Brown, Peter Schuck: A new adaptive grid-size algorithm for the simulation of sedimentation velocity profiles in analytical ultracentrifugation. 105-120
• 
  Cheol-O Ahn, Sang Hwan Lee: A new treecode for long-range force calculation. 121-127
• 
  Mark J. Rayson, Patrick R. Briddon: Rapid iterative method for electronic-structure eigenproblems using localised basis functions. 128-134

• 
  Sylvain Collange, Marc Daumas, David Defour: Line-by-line spectroscopic simulations on graphics processing units. 135-143
• 
  O. Bezshyyko, A. Dolinskii, K. Bezshyyko, I. Kadenko, R. Yermolenko, V. Ziemann: PETAG01: A program for the direct simulation of a pellet target. 144-155
• 
  Martin Andersson, Per Jönsson: HFSZEEMAN - A program for computing weak and intermediate field fine and hyperfine structure Zeeman splittings from MCDHF wave functions. 156-170

Volume 178, Number 3, February 2008

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  Changfeng Xue, Shaozhong Deng: New versions of image approximations to the ionic solvent induced reaction field. 171-185
• 
  Pedro R. C. da Silveira, Cesar R. S. da Silva, Renata M. Wentzcovitch: Metadata management for distributed first principles calculations in VLab - A collaborative cyberinfrastructure for materials computation. 186-198
• 
  T. E. Simos: High-order closed Newton-Cotes trigonometrically-fitted formulae for long-time integration of orbital problems. 199-207
• 
  Francesco Belletti, Maria Cotallo, Andres Cruz Flor, Luis Antonio Fernandez, Antonio Gordillo, Andrea Maiorano, Filippo Mantovani, Enzo Marinari, Victor Martin-Mayor, Antonio Munoz Sudupe, Denis Navarro, Sergio Perez Gaviro, Juan Jesus Ruiz-Lorenzo, Sebastiano Fabio Schifano, Daniele Sciretti, Alfonso Tarancón, Raffaele Tripiccione, Jose Luis Velasco: Simulating spin systems on IANUS, an FPGA-based computer. 208-216
• 
  Thomas Hahn: A Mathematica interface for FormCalc-generated code. 217-221

• 
  S. Belov, L. Dudko, E. Galkin, A. Gusev, W. Pokorski, A. Sherstnev: LCG MCDB - a knowledgebase of Monte-Carlo simulated events. 222-229
• 
  Jan-Hendrik Jureit, Christoph A. Stephan: Finding the standard model of particle physics a combinatorial problem. 230-247

Volume 178, Number 4, February 2008

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  A. I. Mahdy: Interactions of two co-propagating laser beams in underdense plasmas using a generalized Peaceman-Rachford ADI form. 249-271
• 
  Byoungseon Jeon, Joel D. Kress, Lee A. Collins, Niels Grønbech-Jensen: Parallel TREE code for two-component ultracold plasma analysis. 272-279
• 
  Aiichiro Nakano: A space-time-ensemble parallel nudged elastic band algorithm for molecular kinetics simulation. 280-289
• 
  Jin Xu, Peter N. Ostroumov, Jerry Nolen: A parallel 3D Poisson solver for space charge simulation in cylindrical coordinates. 290-300

• 
  Ochbadrakh Chuluunbaatar, A. A. Gusev, Vladimir P. Gerdt, V. A. Rostovtsev, Sergey I. Vinitsky, A. G. Abrashkevich, Michail S. Kaschiev, V. V. Serov: POTHMF: A program for computing potential curves and matrix elements of the coupled adiabatic radial equations for a hydrogen-like atom in a homogeneous magnetic field. 301-330

Volume 178, Number 5, March 2008

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  John Allison, M. Asai, G. Barrand, Mark Dönszelmann, K. Minamimoto, Joseph Perl, S. Tanaka, E. Tcherniaev, J. Tinslay: The Geant4 Visualisation System. 331-365
• 
  Radovan Gospavic, Viktor Popov, Goran Todorovic: Boundary element - dual reciprocity formulation for bound electron states in semiconductor quantum wires. 366-373
• 
  S. Gorbunov, Udo Kebschull, I. Kisel, Volker Lindenstruth, W. F. J. Müller: Fast SIMDized Kalman filter based track fit. 374-383
• 
  Jianhui Li, Zhongwu Zhou, Richard J. Sadus: Parallel algorithms for molecular dynamics with induction forces. 384-392

• 
  P. Ditz, Alfio Borzì: A cascadic monotonic time-discretized algorithm for finite-level quantum control computation. 393-399

Volume 178, Number 6, March 2008

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  Lih-Yuan Deng, Rui Guo, Dennis K. J. Lin, Fengshan Bai: Improving Random Number Generators in the Monte Carlo simulations via twisting and combining. 401-408
• 
  Liliana Teodorescu, Daniel Sherwood: High Energy Physics event selection with Gene Expression Programming. 409-419
• 
  Bayram Deviren, Mustafa Keskin, Osman Canko: Dynamic phase transition and multicritical dynamic phase diagrams of the kinetic spin-3/2 Blume-Emery-Griffiths model with repulsive biquadratic coupling under a time-dependent oscillating external field. 420-437
• 
  André Barka, Clément Picard: Implementation of spectral basis functions in BEM/FEM/GSM Domain Decomposition Methods devoted to scattering and radiation applications. 438-448
• 
  YiMin Tian, MengZhao Qin, YongMing Zhang, Tao Ma: The multisymplectic numerical method for Gross-Pitaevskii equation. 449-458

• 
  Jan H. Meinke, Sandipan Mohanty, Frank Eisenmenger, Ulrich H. E. Hansmann: SMMP v. 3.0 - Simulating proteins and protein interactions in Python and Fortran. 459-470

Volume 178, Number 7, April 2008

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  Siham Tabik, Luis F. Romero, Ester M. Garzón, J. I. Ramos: On a model of three-dimensional bursting and its parallel implementation. 471-485
• 
  Yan Feng Li, Kui Fu Chen: Eliminating the picket fence effect of the fast Fourier transform. 486-491
• 
  R. G. M. van der Sman, S. van der Graaf: Emulsion droplet deformation and breakup with Lattice Boltzmann model. 492-504
• 
  Gui-qiong Xu: Searching for Painlevé integrable conditions of nonlinear PDEs with constant parameters using symbolic computation. 505-517

• 
  Ning Li, Hua-Xia Zhao, Sang-Hyun Cho, Jung-Gil Choi, Myoung-Hee Kim: A fast algorithm for voxel-based deterministic simulation of X-ray imaging. 518-523
• 
  Micael J. T. Oliveira, Fernando Nogueira: Generating relativistic pseudo-potentials with explicit incorporation of semi-core states using APE, the Atomic Pseudo-potentials Engine. 524-534
• 
  N. Michel, M. V. Stoitsov: Fast computation of the Gauss hypergeometric function with all its parameters complex with application to the Pöschl-Teller-Ginocchio potential wave functions. 535-551

Volume 178, Number 8, April 2008

• 
  Lukas Arnold, Jürgen Dreher, Rainer Grauer: A semi-implicit Hall-MHD solver using whistler wave preconditioning. 553-557
• 
  Yousef El-Kurdi, David Fernández, Evgueni Souleimanov, Dennis Giannacopoulos, Warren J. Gross: FPGA architecture and implementation of sparse matrix-vector multiplication for the finite element method. 558-570
• 
  T. F. Jiang: Calculation of atomic hydrogen and its photoelectron spectra in momentum space. 571-577

• 
  Joris Van Deun, Ronald Cools: Integrating products of Bessel functions with an additional exponential or rational factor. 578-590
• 
  D. Nikezic, K. N. Yu: Computer program TRACK_VISION for simulating optical appearance of etched tracks in CR-39 nuclear track detectors. 591-595
• 
  Christian Bogner, Stefan Weinzierl: Resolution of singularities for multi-loop integrals. 596-610
• 
  Viktor K. Decyk, Henry J. Gardner: Object-oriented design patterns in Fortran 90/95: mazev1, mazev2 and mazev3. 611-620
• 
  E. Francisco, A. Martín Pendás, M. A. Blanco: EDF: Computing electron number probability distribution functions in real space from molecular wave functions. 621-634

Volume 178, Number 9, May 2008

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  G. A. Esleta, C. Monterola: Structural reinforcement in a spring-block model of stress-induced fracture propagation. 635-646
• 
  R. De Bartolo, A. Greco, P. Veltri: A 3D kinetic-fluid numerical code for stationary equilibrium states in magnetized plasmas. 647-664
• 
  I. I. Shevchenko: Symbolic computation of the Birkhoff normal form in the problem of stability of the triangular libration points. 665-672
• 
  B. A. Mamedov: Accurate evaluation of integrals arising from the bulk electron densities in quantum wells of high electron mobility transistors. 673-675

• 
  Sheng-Gui He, Dennis J. Clouthier: RT3: A Windows program for the Renner-Teller analysis of 2Pi states of triatomic molecules. 676-684
• 
  Arash A. Mostofi, Jonathan R. Yates, Young-Su Lee, Ivo Souza, David Vanderbilt, Nicola Marzari: wannier90: A tool for obtaining maximally-localised Wannier functions. 685-699
• 
  Songxin Liang, David J. Jeffrey: Automatic computation of the travelling wave solutions to nonlinear PDEs. 700-712

Volume 178, Number 10, May 2008

• 
  Georg M. von Hippel, Randy Lewis, Robert G. Petry: Evolutionary fitting methods for the extraction of mass spectra in lattice field theory. 713-723
• 
  Zak E. Hughes, Lorna M. Stimson, Henk Slim, Juho S. Lintuvuori, Jaroslav M. Ilnytskyi, Mark R. Wilson: An investigation of soft-core potentials for the simulation of mesogenic molecules and molecules composed of rigid and flexible segments. 724-731
• 
  M. Calvo, J. M. Franco, J. I. Montijano, L. Rández: Sixth-order symmetric and symplectic exponentially fitted modified Runge-Kutta methods of Gauss type. 732-744

• 
  F. Mahmoudi: SuperIso: A program for calculating the isospin asymmetry of B -> K^*gamma in the MSSM. 745-754
• 
  Tobias Huber, Daniel Maître: HypExp 2, Expanding hypergeometric functions about half-integer parameters. 755-776
• 
  G. Opletal, T. C. Petersen, B. O'Malley, I. K. Snook, D. G. McCulloch, I. Yarovsky: HRMC: Hybrid Reverse Monte Carlo method with silicon and carbon potentials. 777-787
• 
  C. C. Bordeianu, C. Besliu, Al. Jipa, D. Felea, I. V. Grossu: Scilab software package for the study of dynamical systems. 788-793

• 
  P.-Y. Chen, Y.-L. Shao, K.-W. Cheng, K.-H. Hsu, Jong-Shinn Wu, J.-P. Yu: Erratum to "Three-dimensional simulation studies on electrostatic predictions for carbon nanotube field effect transistors" [Computer Physics Communications 177 (2007) 683-688]. 794

Volume 178, Number 11, June 2008

• 
  Tongsong Jiang, Li Chen: An algebraic method for Schrödinger equations in quaternionic quantum mechanics. 795-799
• 
  Luis F. Romero, Siham Tabik, Jesús M. Vías, Emilio L. Zapata: Fast clear-sky solar irradiation computation for very large digital elevation models. 800-808
• 
  Gianpiero Colonna, Annarita Laricchiuta: General numerical algorithm for classical collision integral calculation. 809-816
• 
  Tirath Ramdas, Gregory K. Egan, David Abramson, Kim Baldridge: On ERI sorting for SIMD execution of large-scale Hartree-Fock SCF. 817-834

• 
  S. Janecek, E. Krotscheck: A fast and simple program for solving local Schrödinger equations in two and three dimensions. 835-842
• 
  Ioannis G. Tsoulos, Isaac E. Lagaris: GenMin: An enhanced genetic algorithm for global optimization. 843-851
• 
  Torbjörn Sjöstrand, Stephen Mrenna, Peter Skands: A brief introduction to PYTHIA 8.1. 852-867
• 
  Guido R. Mocken, Christoph H. Keitel: FFT-split-operator code for solving the Dirac equation in 2+1 dimensions. 868-882

• 
  Daniela Tordella, Michele Iovieno, Silvano Massaglia: Erratum to: Small scale localization in turbulent flows. A priori tests applied to a possible Large Eddy Simulation of compressible turbulent flows [Computer Physics Communications 176 (2007) 539-549]. 883-884

Volume 178, Number 12, June 2008

• 
  Bülent Karasözen, Andrew D. Nemtsev, V. G. Tsybulin: Staggered grids discretization in three-dimensional Darcy convection. 885-893
• 
  Marco D. Mazzeo, Peter V. Coveney: HemeLB: A high performance parallel lattice-Boltzmann code for large scale fluid flow in complex geometries. 894-914
• 
  Keizo Fujimoto, Richard D. Sydora: Electromagnetic particle-in-cell simulations on magnetic reconnection with adaptive mesh refinement. 915-923
• 
  Kui Fu Chen, Yan Feng Li: Combining the Hanning windowed interpolated FFT in both directions. 924-928

• 
  Gary N. Felder, Igor Tkachev: LATTICEEASY: A program for lattice simulations of scalar fields in an expanding universe. 929-932
• 
  Fabienne Jézéquel, Jean Marie Chesneaux: CADNA: a library for estimating round-off error propagation. 933-955
• 
  O. Pisanti, A. Cirillo, S. Esposito, F. Iocco, Giuseppe Mangano, Gennaro Miele, P. D. Serpico: PArthENoPE: Public algorithm evaluating the nucleosynthesis of primordial elements. 956-971

• 
  K. S. Kölbig, B. Schorr: Erratum to: "A program package for the Landau distribution" [Computer Physics Communications 31 (1984) 97-111]. 972

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