Volume 35, Number 1, February 2011

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  Kaveh Kavousi, Behzad Moshiri, Mehdi Sadeghi, Babak Nadjar Araabi, Ali Akbar Moosavi-Movahedi: A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM. 1-9
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  Yazhou Chen, Xiufeng Yan, Sixue Chen: Bioinformatic analysis of molecular network of glucosinolate biosynthesis. 10-18
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  Kien Ming Ng, Muthu Solayappan, Kim-Leng Poh: Global energy minimization of alanine dipeptide via barrier function methods. 19-23
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  Matthew D. Shortridge, Thomas Triplet, Peter Z. Revesz, Mark A. Griep, Robert Powers: Bacterial protein structures reveal phylum dependent divergence. 24-33
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  Olga V. Levtsova, Mikhail Yu. Antonov, Tatsina V. Naumenkova, Olga S. Sokolova: Interaction of zervamicin IIB with lipid bilayers. Molecular dynamics study. 34-39
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  Yaning Yang, Elaine F. Remmers, Chukwuma B. Ogunwole, Daniel L. Kastner, Peter K. Gregersen, Wentian Li: Effective sample size: Quick estimation of the effect of related samples in genetic case-control association analyses. 40-49
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  Ji-Long Zhang, Qing-Chuan Zheng, Hong-Xing Zhang: Theoretical improvement of the specific inhibitor of human carbonic anhydrase VII. 50-56

Volume 35, Number 2, April 2011

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  R. Shyama Prasad Rao, Ole Thomsen Buus, Bernd Wollenweber: Distribution of N-glycosylation sequons in proteins: How apart are they? 57-61
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  Qing-Ju Jiao, Yan Huang, Hong-Bin Shen: Large-scale mining co-expressed genes in Arabidopsis anther: From pair to group. 62-68
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  S. Khatibisepehr, B. Huang, F. Ibrahim, J. Z. Xing, W. Roa: Data-based modeling and prediction of cytotoxicity induced by contaminants in water resources. 69-80
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  Hervé Seligmann: Error compensation of tRNA misacylation by codon-anticodon mismatch prevents translational amino acid misinsertion. 81-95
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  Sikander Hayat, Yungki Park, Volkhard Helms: Statistical analysis and exposure status classification of transmembrane beta barrel residues. 96-107
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  Debra J. Knisley, Jeff Knisley: Predicting protein-protein interactions using graph invariants and a neural network. 108-113

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  B. P. Niranjan Reddy, G. B. K. S. Prasad, K. Raghavendra: In silico analysis of glutathione S-transferase supergene family revealed hitherto unreported insect specific δ- and ɛ-GSTs and mammalian specific μ-GSTs in Ixodes scapularis (Acari: Ixodidae). 114-120

Volume 35, Number 3, June 2011

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  Junfeng Xia, Jingchun Sun, Peilin Jia, Zhongming Zhao: Do cancer proteins really interact strongly in the human protein-protein interaction network? 121-125
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  Dong Wang, Lixin Cheng, Mingyue Wang, Ruihong Wu, Pengfei Li, Bin Li, Yuannv Zhang, Yunyan Gu, Wenyuan Zhao, Chenguang Wang, Zheng Guo: Extensive increase of microarray signals in cancers calls for novel normalization assumptions. 126-130
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  Daichuan Ma, Jiamin Xiao, Yizhou Li, Yuanbo Diao, Yanzhi Guo, Menglong Li: Feature importance analysis in guide strand identification of microRNAs. 131-136
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  Gang Hu, Shiyi Shen, Kui Wang: On the evolution rate in mammalian mitochondrial genomes. 137-142
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  Min Li, Jianxin Wang, Xiang Chen, Huan Wang, Yi Pan: A local average connectivity-based method for identifying essential proteins from the network level. 143-150
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  Ying Wang, Jiajia Chen, Qinghui Li, Haiyun Wang, Ganqiang Liu, Qing Jing, Bairong Shen: Identifying novel prostate cancer associated pathways based on integrative microarray data analysis. 151-158
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  Cecilia Anselmi, Anna Buonocore, Marisanna Centini, Roberto Maffei Facino, Hanns Hatt: The human olfactory receptor 17-40: Requisites for fitting into the binding pocket. 159-168
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  Rui Zhou, Yi He, Yi Xiao: Multi-nucleation and vectorial folding pathways of large helix protein. 169-173
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  Siv Midtun Hollup, Michael I. Sadowski, Inge Jonassen, William R. Taylor: Exploring the limits of fold discrimination by structural alignment: A large scale benchmark using decoys of known fold. 174-188
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  Yang Yang, Zuofeng Li, Peng Nan, Xiaoyan Zhang: Drug-induced glucose-6-phosphate dehydrogenase deficiency-related hemolysis risk assessment. 189-192
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  Bing Wang, Bonan Hou, Fei Xing, Yiping Yao: Abstract Next Subvolume Method: A logical process-based approach for spatial stochastic simulation of chemical reactions. 193-198
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  Elaine Garbarine, Joseph DePasquale, Vinay Gadia, Robi Polikar, Gail L. Rosen: Information-theoretic approaches to SVM feature selection for metagenome read classification. 199-209

Volume 35, Number 4, August 2011

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  Leping Zhang, Yufang Zheng, Dongfang Li, Yang Zhong: Self-organizing map of gene regulatory networks for cell phenotypes during reprogramming. 211-217
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  Asifullah Khan, Abdul Majid, Maqsood Hayat: CE-PLoc: An ensemble classifier for predicting protein subcellular locations by fusing different modes of pseudo amino acid composition. 218-229
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  Ivan Kondov, Abhinav Verma, Wolfgang Wenzel: Performance assessment of different constraining potentials in computational structure prediction for disulfide-bridged proteins. 230-239
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  Gábor Janzsó, Ferenc Bogár, Liza Hudoba, Botond Penke, Gábor Rákhely, Balázs Leitgeb: Exploring and characterizing the folding processes of Lys- and Arg-containing Ala-based peptides: A molecular dynamics study. 240-250
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  YoungJung Chang, Nikolaos V. Sahinidis: An integer programming approach to DNA sequence assembly. 251-258

Volume 35, Number 5, October 2011

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  Yeonhwa Jo, Tae Kyung Hyun: Genome-wide identification of antioxidant component biosynthetic enzymes: Comprehensive analysis of ascorbic acid and tocochromanols biosynthetic genes in rice. 261-268
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  Márcio A. Mourão, Santiago Schnell, Sidney L. Shaw: Macroscopic simulations of microtubule dynamics predict two steady-state processes governing array morphology. 269-281
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  Aysun Eren Toku, Saliha Durmus Tekir, Fatma Betül Kavun Özbayraktar, Kutlu Ö. Ülgen: Reconstruction and crosstalk of protein-protein interaction networks of Wnt and Hedgehog signaling in Drosophila melanogaster. 282-292
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  Jiangyong Gu, Hu Zhang, Lirong Chen, Shun Xu, Gu Yuan, Xiaojie Xu: Drug-target network and polypharmacology studies of a Traditional Chinese Medicine for type II diabetes mellitus. 293-297
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  Liang Yu, Lin Gao, Kui Li, Yi Zhao, David K. Y. Chiu: A degree-distribution based hierarchical agglomerative clustering algorithm for protein complexes identification. 298-307
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  Chuan Wang, Ren-Xiang Yan, Xiao-Feng Wang, Jing-Na Si, Ziding Zhang: Comparison of linear gap penalties and profile-based variable gap penalties in profile-profile alignments. 308-318
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  Yuan Zhang, Hong Zhang, Tianyin Zhou, Yang Zhong, Qi Jin: Genes under positive selection in Mycobacterium tuberculosis. 319-322
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  Michael I. Sadowski, Katarzyna Maksimiak, William R. Taylor: Direct correlation analysis improves fold recognition. 323-332

Volume 35, Number 6, December 2011

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  Consuelo Calle, Patricio Aller, Moisés García-Arencibia: Identification of virtual signal transducers and activators of transcription response elements in the human insulin receptor gene promoter. 333-335
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  Zhen Liu, Xiao Li, Peihu Zhao, Junhong Gui, Wen Zheng, Yizheng Zhang: Tracing the evolution of the mitochondrial protein import machinery. 336-340
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  Silvia Tenorio-Salgado, Alejandro Huerta-Saquero, Ernesto Pérez-Rueda: New insights on gene regulation in archaea. 341-346
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  Anna Mozrzymas: A generalized graph-theoretical matrix of heterosystems and its application to the VMV procedure. 347-352
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  Yong-Cui Wang, Chun-Hua Zhang, Nai-Yang Deng, Yong Wang: Kernel-based data fusion improves the drug-protein interaction prediction. 353-362
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  E. S. Omelina, E. M. Baricheva, Dmitry Yu. Oshchepkov, Tatyana I. Merkulova: Analysis and recognition of the GAGA transcription factor binding sites in Drosophila genes. 363-370
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  Somnath Tagore, Rajat K. De: Detecting breakdown points in metabolic networks. 371-380

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