Volume 28,
Number 1,
February 2004
- Andrzej K. Konopka:
All we need is truth.
1-2
- Anne-Sophie Carpentier, Alessandra Riva, Pierre Tisseur, Gilles Didier, Alain Hénaut:
The operons, a criterion to compare the reliability of transcriptome analysis tools: ICA is more reliable than ANOVA, PLS and PCA.
3-10
- Jacek Blazewicz, Piotr Formanowicz, Marta Kasprzak, Wojciech T. Markiewicz, Aleksandra Swiercz:
Tabu search algorithm for DNA sequencing by hybridization with isothermic libraries.
11-19
- Mercè Llabrés, Francesc Rosselló:
A new family of metrics for biopolymer contact structures.
21-37
- Yasuhito Inoue, Masami Ikeda, Toshio Shimizu:
Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern.
39-49
- Jun-Xiong Xia, Masami Ikeda, Toshio Shimizu:
ConPred_elite: a highly reliable approach to transmembrane topology prediction.
51-60
- Hideaki Nakamura:
Prediction of peptide conformation using a scale-transformed entropy sampling algorithm.
61-66
- Werner Baumgartner:
Electrodiffusion near an ion channel and the effect of mobile buffer.
67-73
- Emily A. Berry, Andrew R. Dalby, Zheng Rong Yang:
Reduced bio basis function neural network for identification of protein phosphorylation sites: comparison with pattern recognition algorithms.
75-85
- Cathy H. Wu, Hongzhan Huang, Anastasia N. Nikolskaya, Zhang-Zhi Hu, Winona C. Barker:
The iProClass integrated database for protein functional analysis.
87-96
Volume 28,
Number 2,
April 2004
- Lana Yeganova, Lawrence H. Smith, W. John Wilbur:
Identification of related gene/protein names based on an HMM of name variations.
97-107
- Alessandra Riva, Marie-Odile Delorme, Tony Chevalier, Nicolas Guilhot, Corinne Hénaut, Alain Hénaut:
The difficult interpretation of transcriptome data: the case of the GATC regulatory network.
109-118
- David Hernández, Robin Gras, Ron D. Appel:
MoDEL: an efficient strategy for ungapped local multiple alignment.
119-128
- Andrzej Galat:
A note on clustering the functionally-related paralogues and orthologues of proteins: a case of the FK506-binding proteins (FKBPs).
129-140
- Yi Wang, Kuo-Bin Li:
An adaptive and iterative algorithm for refining multiple sequence alignment.
141-148
- Chun-Ting Zhang, Ren Zhang:
A nucleotide composition constraint of genome sequences.
149-153
Volume 28,
Number 3,
July 2004
- Andrzej K. Konopka:
Measuring quality of research: what do they mean and why they mean so?.
163
- Thomas E. Turner, Santiago Schnell, Kevin Burrage:
Stochastic approaches for modelling in vivo reactions.
165-178
- Jing-Fa Xiao, Ze-Sheng Li, Miao Sun, Yuan Zhang, Chia-Chung Sun:
Homology modeling and molecular dynamics study of GSK3/SHAGGY-like kinase.
179-188
- Yong Deng, Qi Liu, Yi-Xue Li:
Scoring hidden Markov models to discriminate -barrel membrane proteins.
189-194
- Scott E. Whitney, Alugupally Sudhir, R. Michael Nelson, Hendrik J. Viljoen:
Principles of rapid polymerase chain reactions: mathematical modeling and experimental verification.
195-209
- S. Mohseni-Zadeh, Pierre Brézellec, Jean-Loup Risler:
Cluster-C, an algorithm for the large-scale clustering of protein sequences based on the extraction of maximal cliques.
211-218
- Bjarne Knudsen, Ebbe Sloth Andersen, Christian K. Damgaard, Jorgen Kjems, Jan Gorodkin:
Evolutionary rate variation and RNA secondary structure prediction.
219-226
- Stefano Allesina, Robert E. Ulanowicz:
Cycling in ecological networks: Finn's index revisited .
227-233
- Yongxi Tan, Leming M. Shi, Weida Tong, G. T. Gene Hwang, Charles Wang:
Multi-class tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification models.
235-243
Volume 28,
Number 4,
October 2004
- Pei-lin Mao, Tie-Fei Liu, Kelly Kueh, Ping Wu:
Predicting the efficiency of UAG translational stop signal through studies of physicochemical properties of its composite mono- and dinucleotides.
245-256
- Teresa M. Przytycka, Yi-Kuo Yu:
Scale-free networks versus evolutionary drift.
257-264
- W. Jim Zheng, Velin Z. Spassov, Lisa Yan, Paul K. Flook, Sándor Szalma:
A hidden Markov model with molecular mechanics energy-scoring function for transmembrane helix prediction.
265-274
- Ying Huang, Jun Cai, Liang Ji, Yanda Li:
Classifying G-protein coupled receptors with bagging classification tree.
275-280
- David I. Mester, Yefim I. Ronin, Eviatar Nevo, Abraham B. Korol:
Fast and high precision algorithms for optimization in large-scale genomic problems.
281-290
Volume 28,
Number 5-6,
December 2004
Article
Short communication
- Lawrence H. Smith, W. John Wilbur:
Retrieving definitional content for ontology development.
387-391
- Wentian Li, Dirk Holste:
An unusual 500, 000 bases long oscillation of guanine and cytosine content in human chromosome 21.
393-399
- Junwei Zhang, Masahiro Aizawa, Shinji Amari, Yoshio Iwasawa, Tatsuya Nakano, Kotoko Nakata:
Development of KiBank, a database supporting structure-based drug design.
401-407
- Zhang-Zhi Hu, Inderjeet Mani, Vincent Hermoso, Hongfang Liu, Cathy H. Wu:
iProLINK: an integrated protein resource for literature mining.
409-416
- Zhihua Du, Feng Lin:
A hierarchical clustering algorithm for MIMD architecture.
417-419
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