Computer Applications in the Biosciences, Volume 5
Volume 5, Number 1, February 1989
T. Charles Hodgman: The elucidation of protein function by sequence motif analysis. 1-13- G. H. Dibdin: A simple add-on algorithm to extend one-dimensional finite difference diffusion calculations to include charge coupling. 19-26
- Stefano Volinia, Roberto Gambari, F. Bernardi, Italo Barrai: The frequency of oligonucleotides in mammalian genic regions. 33-40
- S. Sjoberg, P. Carlsson, S. Enerback, G. Bjursell: A compact, flexible and cheap system for acquiring sequence data from autoradiograms with a digitizer and transferring it to an arbitrary host computer. 41-46
- José L. Oliver, A. Marin, J. R. Medina: SDSE: a software package to simulate the evolution of a pair of DNA sequences. 47-50
- W. Bains: MULTAN (2), a multiple string alignment program for nucleic acids and proteins. 51-52
- Stefano Pascarella, Francesco Bossa: CLEAVAGE: a microcomputer program for predicting signal sequence cleavage sites. 53-54
- J. L. Micol: A computer program for the generation of problems in genetics for teaching purposes. 55
- R. Gasperini: Using Lotus 1-2-3 to determine correlation of linearly related method comparison data. 56-57
Volume 5, Number 2, April 1989
- Rodger Staden: Methods for calculating the probabilities of finding patterns in sequences. 89-96
- G. Mengeritsky, Temple F. Smith: New analytical tool for analysis of splice site sequence determinants. 97-100
- J. Sulston, F. Mallett, R. Durbin, Terry Horsnell: Image analysis of restriction enzyme fingerprint autoradiograms. 101-106
- R. Rechid, Martin Vingron, P. Argos: A new interactive protein sequence alignment program and comparison of its results with widely used algorithms. 107-113
- R. F. Mott, T. B. Kirkwood, R. N. Curnow: A test for the statistical significance of DNA sequence similarities for application in databank searches. 123-131
- P. M. Reid, A. E. Wilkinson, K. C. Leung, M. N. Jones: SED88: a Pascal program for the analysis of sedimentation equilibrium data. 133-135
- T. Brittain: A BASIC program for the removal of noise from reaction traces using Fourier filtering. 137-140
- C. M. Henneke: A multiple sequence alignment algorithm for homologous proteins using secondary structure information and optionally keying alignments to functionally important sites. 141-150
- Desmond G. Higgins, P. M. Sharp: Fast and sensitive multiple sequence alignments on a microcomputer. 151-153
- Judith E. Broom, Peter A. Stockwell, Diana F. Hill: GELENT: a sequence gel entry program for keyboard and sonic digitizer input. 155-157
- A. Sette, L. Adorini, C. Mancini, G. Doria: A BASIC microcomputer program for data analysis of limiting dilution assays. 161
Volume 5, Number 3, July 1989
- E. B. Moser: Exploring contingency tables with correspondence analysis. 183-189
- M. P. Weiner, Harold A. Scheraga: A set of Macintosh computer programs for the design and analysis of synthetic genes. 191-198
- J. Vu Tien Khang: A FORTRAN subroutine to compute inbreeding and kinship coefficients according to the number of ancestral generations. 199-204
- Shu-Yun Le, J. Owens, Ruth Nussinov, Jih-H. Chen, Bruce A. Shapiro, Jacob V. Maizel: RNA secondary structures: comparison and determination of frequently recurring substructures by consensus. 205-210
- T. A. Thanaraj, Ashok S. Kolaskar, Madhusudhan W. Pandit: An extension of the graph theoretical approach to predict the secondary structure of large RNAs: the complex of 16S and 23S rRNAs from E. coli as a case study. 211-218
- Modesto Orozco, R. Franco: TEFOOL/2: a program for theoretical drug design on microcomputers. 219-226
- K. Y. Cockwell, I. G. Giles: Software tools for motif and pattern scanning: program descriptions including a universal sequence reading algorithm. 227-232
- E. L. Cabot, A. T. Beckenbach: Simultaneous editing of multiple nucleic acid and protein sequences with ESEE. 233-234
- J. Marszalek, J. Kostrowicki, J. Spychala: LEHM: a convenient non-linear regression microcomputer program for fitting Michaelis-Menten and Hill models to enzyme kinetic data. 239-240
- Modesto Orozco, F. Javier Luque: POEAMS: program for outliers elimination in 'anomalous' multidimensional space. 241-242
Volume 5, Number 4, October 1989
- E. Hamori, G. Varga, J. J. LaGuardia: HYLAS: program for generating H curves (abstract three-dimensional representations of long DNA sequences). 263-269
- A. Galat: Analysis of dynamics trajectories of DNA and DNA-drug complexes. 271-278
- A. Galat: CORGEN: a FORTRAN-77 generator of standard and non-standard DNA helices from the sequence. 279-286
- Jean Thioulouse: Statistical analysis and graphical display of multivariate data on the Macintosh. 287-292
- Rodger Staden: Methods for discovering novel motifs in nucleic acid sequences. 293-298
- Antonio Facchiano, Francesco Facchiano, R. Ragone, Giovanni Colonna: FAST (Flexible Analysis by Software Tool) and CHAMP (CHemico-physical AMinoacidic Parameter data bank): a new tool to investigate protein structure. 299-303
- J. Bermudez, D. Lopez, J. Valls, J. Wagensberg: On the analysis of microbiological processes by Monte Carlo simulation techniques. 305-312
- G. J. King: ELBAMAP: software for management of electrophoresis banding patterns. 313-317
- Stefano Pascarella, Francesco Bossa: PRONET: a microcomputer program for predicting the secondary structure of proteins with a neural network. 319-320
- Kenneth Andrew Sikaris, E. Minasian, Simon Joshua Leach, R. Flegg: Computer program designed to predict and plot the secondary structure of proteins. 323
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