Daniel Barker, Andrew Meade, Mark Pagel: Constrained models of evolution lead to improved prediction of functional linkage from correlated gain and loss of genes.
14-20
Gabriela G. Loots, Ivan Ovcharenko: ECRbase: database of evolutionary conserved regions, promoters, and transcription factor binding sites in vertebrate genomes.
122-124
Matan Ninio, Eyal Privman, Tal Pupko, Nir Friedman: Phylogeny reconstruction: increasing the accuracy of pairwise distance estimation using Bayesian inference of evolutionary rates.
136-141
Saharon Rosset: Efficient inference on known phylogenetic trees using Poisson regression.
142-147
Richard J. Dixon, Ian C. Eperon, Nilesh J. Samani: Complementary intron sequence motifs associated with human exon repetition: a role for intragenic, inter-transcript interactions in gene expression.
150-155
Michael Farrar: Striped Smith-Waterman speeds database searches six times over other SIMD implementations.
156-161
Xu Zhang, Tamer Kahveci: QOMA: quasi-optimal multiple alignment of protein sequences.
162-168
Xiaotu Ma, Hyunju Lee, Li Wang, Fengzhu Sun: CGI: a new approach for prioritizing genes by combining gene expression and protein-protein interaction data.
215-221
Ai Li, Steve Horvath: Network neighborhood analysis with the multi-node topological overlap measure.
222-231
Yvan Saeys, Pierre Rouzé, Yves Van de Peer: In search of the small ones: improved prediction of short exons in vertebrates, plants, fungi and protists.
414-420
Hisanori Kiryu, Taishin Kin, Kiyoshi Asai: Robust prediction of consensus secondary structures using averaged base pairing probability matrices.
434-441
Kai Ye, Walter A. Kosters, Adriaan P. IJzerman: An efficient, versatile and scalable pattern growth approach to mine frequent patterns in unaligned protein sequences.
687-693
Andrzej K. Brodzik: Quaternionic periodicity transform: an algebraic solution to the tandem repeat detection problem.
694-700
Structural Bioinformatics
Yungki Park, Volkhard Helms: On the derivation of propensity scales for predicting exposed transmembrane residues of helical membrane proteins.
701-708
Juris Viksna, David Gilbert: Assessment of the probabilities for evolutionary structural changes in protein folds.
832-841
Gene Expression
Takashi Yoneya, Hiroshi Mamitsuka: A hidden Markov model-based approach for identifying timing differences in gene expression under different experimental factors.
842-849
Chun-Wei Tung, Shinn-Ying Ho: POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties.
942-949
Edmund S. Jackson, William J. Fitzgerald: A sequential Monte Carlo EM approach to the transcription factor binding site identification problem.
1313-1320
Structural Bioinformatics
Stanley Ng Kwang Loong, Santosh K. Mishra: De novo SVM classification of precursor microRNAs from genomic pseudo hairpins using global and intrinsic folding measures.
1321-1330
Daniel M. Kemp, N. R. Nirmala, Joseph D. Szustakowski: Extending the pathway analysis framework with a test for transcriptional variance implicates novel pathway modulation during myogenic differentiation.
1356-1362
Alexander V. Alekseyenko, Christopher J. Lee: Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases.
1386-1393
Joachim L. Schultze, Daniela Eggle: IlluminaGUI: Graphical User Interface for analyzing gene expression data generated on the Illumina platform.
1431-1433
Jan Freudenberg, Ying-Hui Fu, Louis J. Ptácek: Human recombination rates are increased around accelerated conserved regions - evidence for continued selection?
1441-1443
Avril Coghlan, Richard Durbin: Genomix: a method for combining gene-finders' predictions, which uses evolutionary conservation of sequence and intron-exon structure.
1468-1475
Lifeng Wang, Guang Chen, Hongzhe Li: Group SCAD regression analysis for microarray time course gene expression data.
1486-1494
Hyunsoo Kim, Haesun Park: Sparse non-negative matrix factorizations via alternating non-negativity-constrained least squares for microarray data analysis.
1495-1502
D. Huang, Tommy W. S. Chow: Identifying the biologically relevant gene categories based on gene expression and biological data: an example on prostate cancer.
1503-1510
Jie Zhou, Hanchuan Peng: Automatic recognition and annotation of gene expression patterns of fly embryos.
1571-1572
Volume 23, Number 13, July 2007
Proceedings 15th International Conference on Intelligent Systems for Molecular Biology (ISMB) & 6th European Conference on Computational Biology (ECCB), Vienna, Austria, July 21-25, 2007.
2007 Contents
Nicola Soranzo, Ginestra Bianconi, Claudio Altafini: Comparing association network algorithms for reverse engineering of large-scale gene regulatory networks: synthetic versus real data.
1640-1647
